Wall clock time and date at job start Mon Mar 30 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 119.91678 * 2 1 4 4 C 1.38381 * 120.34900 * 179.97438 * 3 2 1 5 5 C 1.37905 * 120.17330 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.08833 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47330 * 183.20897 * 6 5 4 8 8 C 1.50703 * 109.46975 * 303.20811 * 6 5 4 9 9 H 1.08001 * 120.00113 * 0.02562 * 8 6 5 10 10 C 1.37878 * 120.00278 * 180.02562 * 8 6 5 11 11 N 1.31517 * 119.99359 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 120.00296 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47074 * 59.99874 * 12 10 8 14 14 H 1.48501 * 109.47491 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47094 * 300.00238 * 12 10 8 16 16 C 1.52997 * 109.47408 * 63.20647 * 6 5 4 17 17 C 1.53000 * 117.50059 * 128.62315 * 16 6 5 18 18 C 1.53001 * 60.00078 * 252.51185 * 17 16 6 19 19 C 1.39827 * 119.82328 * 359.97438 * 5 4 3 20 20 C 1.47175 * 120.17127 * 179.97438 * 19 5 4 21 21 O 1.21255 * 119.99712 * 175.76875 * 20 19 5 22 22 C 1.37867 * 119.90949 * 180.25116 * 2 1 3 23 23 H 1.08997 * 109.46960 * 90.00304 * 1 2 3 24 24 H 1.08999 * 109.47472 * 210.00267 * 1 2 3 25 25 H 1.08998 * 109.46946 * 330.00086 * 1 2 3 26 26 H 1.07999 * 119.82233 * 359.95013 * 3 2 1 27 27 H 1.08004 * 119.91187 * 179.97438 * 4 3 2 28 28 H 0.97005 * 119.99269 * 180.02562 * 11 10 8 29 29 H 1.08999 * 115.55399 * 274.33273 * 16 6 5 30 30 H 1.09007 * 117.49679 * 0.02562 * 17 16 6 31 31 H 1.08998 * 117.50026 * 145.02412 * 17 16 6 32 32 H 1.09002 * 117.49716 * 252.50928 * 18 17 16 33 33 H 1.09000 * 117.51732 * 107.47870 * 18 17 16 34 34 H 1.07996 * 119.99616 * 355.50495 * 20 19 5 35 35 H 1.08001 * 120.09447 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5812 1.2102 0.0005 5 6 4.2833 0.0233 0.0016 6 6 5.7902 0.0369 0.0016 7 1 6.1629 -0.9859 -0.0550 8 6 6.2855 0.8185 -1.1879 9 1 5.5797 1.2615 -1.8749 10 6 7.6398 0.9681 -1.3992 11 7 8.4993 0.4283 -0.5629 12 14 8.2537 1.9363 -2.8740 13 1 7.7464 3.3299 -2.7972 14 1 9.7386 1.9499 -2.8740 15 1 7.7639 1.2995 -4.1229 16 6 6.2944 0.6928 1.2886 17 6 7.3355 -0.0706 2.1097 18 6 5.8960 0.0434 2.6154 19 6 3.5933 -1.1929 0.0027 20 6 4.3349 -2.4641 0.0033 21 8 3.7357 -3.5154 0.0817 22 6 2.1945 -1.1950 -0.0052 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6532 2.1326 -0.0008 27 1 4.1127 2.1504 0.0001 28 1 9.4521 0.5339 -0.7113 29 1 6.3713 1.7798 1.2634 30 1 7.6616 -1.0400 1.7327 31 1 8.0977 0.5141 2.6248 32 1 5.7112 0.7032 3.4632 33 1 5.2745 -0.8509 2.5714 34 1 5.4123 -2.4607 -0.0704 35 1 1.6546 -2.1304 -0.0098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260353230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:30 Heat of formation + Delta-G solvation = 1.716565 kcal Electronic energy + Delta-G solvation = -17406.172176 eV Core-core repulsion = 14755.585470 eV Total energy + Delta-G solvation = -2650.586705 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.56843 -37.73744 -36.55580 -33.19867 -32.28158 -30.63806 -28.82848 -25.82524 -24.31530 -23.14043 -21.34475 -21.13662 -19.99914 -18.88449 -16.73230 -16.03976 -15.44001 -15.02087 -14.55932 -14.06091 -13.99728 -13.83956 -13.33743 -13.25800 -13.02409 -12.59987 -12.17190 -11.89029 -11.48461 -11.20036 -11.00682 -10.93206 -10.64767 -10.54654 -10.28384 -9.92833 -9.79190 -9.22502 -8.84605 -8.75899 -8.41254 -8.36684 -7.83256 -6.09825 -4.17860 1.22467 1.97564 2.98782 3.26321 3.31777 3.34646 4.30349 4.42971 4.83841 4.99143 5.19250 5.20529 5.34869 5.51939 5.61393 5.74848 5.77645 5.86487 5.93466 6.02366 6.12829 6.20903 6.32150 6.44205 6.46225 6.64691 6.82035 6.90223 6.96408 6.99253 7.11816 7.16298 7.37458 7.51906 7.64913 7.84289 7.93852 8.20990 8.83721 9.47161 10.95750 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.008139 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.290139 B = 3439.399121 C = 3805.620719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.134 4.134 3 C -0.090 4.090 4 C -0.120 4.120 5 C 0.025 3.975 6 C 0.094 3.906 7 H 0.043 0.957 8 C -0.520 4.520 9 H 0.059 0.941 10 C 0.071 3.929 11 N -0.872 5.872 12 Si 0.890 3.110 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.082 4.082 17 C -0.135 4.135 18 C -0.227 4.227 19 C -0.205 4.205 20 C 0.386 3.614 21 O -0.485 6.485 22 C -0.063 4.063 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.262 0.738 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.435 1.069 2.681 8.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C -0.108 4.108 4 C -0.138 4.138 5 C 0.025 3.975 6 C 0.076 3.924 7 H 0.061 0.939 8 C -0.558 4.558 9 H 0.078 0.922 10 C -0.133 4.133 11 N -0.508 5.508 12 Si 0.718 3.282 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.101 4.101 17 C -0.172 4.172 18 C -0.264 4.264 19 C -0.206 4.206 20 C 0.247 3.753 21 O -0.361 6.361 22 C -0.081 4.081 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.147 0.853 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.540 0.482 2.761 8.989 hybrid contribution 0.555 0.808 -0.805 1.268 sum -7.986 1.290 1.956 8.322 Atomic orbital electron populations 1.20677 0.91713 1.02088 1.01695 1.19656 0.95606 0.93182 1.04922 1.21227 0.94610 0.96921 0.98081 1.21060 0.92975 0.98956 1.00851 1.20816 0.98256 0.90891 0.87530 1.17720 0.83987 0.97747 0.92976 0.93919 1.20917 0.91613 1.34605 1.08652 0.92233 1.24938 0.96870 0.95417 0.96123 1.70004 1.01973 1.43207 1.35618 0.86684 0.77611 0.80613 0.83271 1.20276 1.21301 1.20263 1.22166 1.00700 0.97744 0.89449 1.22453 0.89921 1.02182 1.02689 1.23081 1.00299 1.03309 0.99757 1.20708 0.94208 0.95899 1.09814 1.24385 0.95615 0.86506 0.68749 1.90416 1.74167 1.34728 1.36800 1.21105 0.93197 0.97421 0.96419 0.91870 0.92090 0.92044 0.86660 0.85311 0.92863 0.89639 0.89528 0.90968 0.90885 0.90630 0.87229 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.01 36.01 0.36 -0.87 16 2 C -0.13 -2.07 5.87 -104.69 -0.61 -2.68 16 3 C -0.09 -1.42 9.69 -39.46 -0.38 -1.81 16 4 C -0.12 -2.21 8.77 -39.65 -0.35 -2.56 16 5 C 0.03 0.51 4.43 -104.15 -0.46 0.05 16 6 C 0.09 2.09 1.97 -92.92 -0.18 1.91 16 7 H 0.04 1.00 5.21 -51.93 -0.27 0.73 16 8 C -0.52 -12.91 8.14 -34.44 -0.28 -13.20 16 9 H 0.06 1.49 7.51 -52.49 -0.39 1.09 16 10 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 11 N -0.87 -22.57 11.44 55.43 0.63 -21.94 16 12 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 C -0.08 -1.75 3.94 -90.62 -0.36 -2.11 16 17 C -0.14 -2.77 9.05 -26.73 -0.24 -3.02 16 18 C -0.23 -4.28 9.87 -26.73 -0.26 -4.55 16 19 C -0.21 -3.92 5.87 -105.06 -0.62 -4.54 16 20 C 0.39 7.37 10.97 34.36 0.38 7.75 16 21 O -0.49 -9.95 17.18 5.58 0.10 -9.85 16 22 C -0.06 -1.09 9.25 -39.10 -0.36 -1.45 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.13 2.35 7.98 -52.48 -0.42 1.93 16 28 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.09 1.92 8.11 -51.93 -0.42 1.50 16 30 H 0.09 1.86 8.05 -51.92 -0.42 1.44 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.11 2.04 5.93 -52.49 -0.31 1.73 16 35 H 0.12 1.98 7.66 -52.49 -0.40 1.58 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -26.53 298.16 -7.99 -34.52 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.72 Total: 3.14 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -3.47 Total: -25.38 kcal Atomic # 7 Polarization: -22.57 SS G_CDS: 0.63 Total: -21.94 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.10 Total: -9.85 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.53 -7.99 -34.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.235 kcal (2) G-P(sol) polarization free energy of solvation -26.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds