Wall clock time and date at job start Mon Mar 30 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 119.91678 * 2 1 4 4 C 1.38381 * 120.34900 * 179.97438 * 3 2 1 5 5 C 1.37905 * 120.17330 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.08833 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47330 * 183.20897 * 6 5 4 8 8 C 1.50703 * 109.46975 * 303.20811 * 6 5 4 9 9 H 1.08001 * 120.00113 * 0.02562 * 8 6 5 10 10 C 1.37878 * 120.00278 * 180.02562 * 8 6 5 11 11 N 1.31517 * 119.99359 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 120.00296 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47074 * 59.99874 * 12 10 8 14 14 H 1.48501 * 109.47491 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47094 * 300.00238 * 12 10 8 16 16 C 1.52997 * 109.47408 * 63.20647 * 6 5 4 17 17 C 1.53000 * 117.50059 * 128.62315 * 16 6 5 18 18 C 1.53001 * 60.00078 * 252.51185 * 17 16 6 19 19 C 1.39827 * 119.82328 * 359.97438 * 5 4 3 20 20 C 1.47175 * 120.17127 * 179.97438 * 19 5 4 21 21 O 1.21255 * 119.99712 * 175.76875 * 20 19 5 22 22 C 1.37867 * 119.90949 * 180.25116 * 2 1 3 23 23 H 1.08997 * 109.46960 * 90.00304 * 1 2 3 24 24 H 1.08999 * 109.47472 * 210.00267 * 1 2 3 25 25 H 1.08998 * 109.46946 * 330.00086 * 1 2 3 26 26 H 1.07999 * 119.82233 * 359.95013 * 3 2 1 27 27 H 1.08004 * 119.91187 * 179.97438 * 4 3 2 28 28 H 0.97005 * 119.99269 * 180.02562 * 11 10 8 29 29 H 1.08999 * 115.55399 * 274.33273 * 16 6 5 30 30 H 1.09007 * 117.49679 * 0.02562 * 17 16 6 31 31 H 1.08998 * 117.50026 * 145.02412 * 17 16 6 32 32 H 1.09002 * 117.49716 * 252.50928 * 18 17 16 33 33 H 1.09000 * 117.51732 * 107.47870 * 18 17 16 34 34 H 1.07996 * 119.99616 * 355.50495 * 20 19 5 35 35 H 1.08001 * 120.09447 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5812 1.2102 0.0005 5 6 4.2833 0.0233 0.0016 6 6 5.7902 0.0369 0.0016 7 1 6.1629 -0.9859 -0.0550 8 6 6.2855 0.8185 -1.1879 9 1 5.5797 1.2615 -1.8749 10 6 7.6398 0.9681 -1.3992 11 7 8.4993 0.4283 -0.5629 12 14 8.2537 1.9363 -2.8740 13 1 7.7464 3.3299 -2.7972 14 1 9.7386 1.9499 -2.8740 15 1 7.7639 1.2995 -4.1229 16 6 6.2944 0.6928 1.2886 17 6 7.3355 -0.0706 2.1097 18 6 5.8960 0.0434 2.6154 19 6 3.5933 -1.1929 0.0027 20 6 4.3349 -2.4641 0.0033 21 8 3.7357 -3.5154 0.0817 22 6 2.1945 -1.1950 -0.0052 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6532 2.1326 -0.0008 27 1 4.1127 2.1504 0.0001 28 1 9.4521 0.5339 -0.7113 29 1 6.3713 1.7798 1.2634 30 1 7.6616 -1.0400 1.7327 31 1 8.0977 0.5141 2.6248 32 1 5.7112 0.7032 3.4632 33 1 5.2745 -0.8509 2.5714 34 1 5.4123 -2.4607 -0.0704 35 1 1.6546 -2.1304 -0.0098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260353230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:30 Heat of formation + Delta-G solvation = -9.576470 kcal Electronic energy + Delta-G solvation = -17406.661878 eV Core-core repulsion = 14755.585470 eV Total energy + Delta-G solvation = -2651.076408 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02438 -39.26354 -38.11974 -34.82814 -33.90201 -32.02727 -30.32415 -27.27207 -25.80726 -24.78179 -22.90357 -22.63817 -21.48410 -20.46841 -18.51699 -17.55623 -16.96522 -16.56934 -16.26637 -15.62048 -15.41378 -15.34064 -14.72499 -14.62821 -14.34956 -14.22571 -13.70317 -12.98367 -12.94764 -12.82085 -12.62428 -12.46917 -12.16689 -12.13608 -11.97878 -11.66879 -11.49421 -10.80788 -10.61349 -10.44617 -10.13133 -9.79184 -9.23071 -8.02641 -6.14950 -0.20920 0.61304 1.45642 1.47846 1.53085 1.53396 2.47282 2.98775 3.24276 3.37273 3.41023 4.00959 4.05679 4.21777 4.26323 4.32024 4.47871 4.51551 4.54861 4.70169 4.90551 4.91043 4.92509 5.02903 5.11670 5.17431 5.31258 5.37978 5.43991 5.50578 5.59934 5.68428 5.70903 5.81828 6.02588 6.15304 6.34390 6.44906 6.90969 7.51301 9.00993 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.008139 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.290139 B = 3439.399121 C = 3805.620719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.133 4.133 5 C 0.006 3.994 6 C 0.097 3.903 7 H 0.023 0.977 8 C -0.529 4.529 9 H 0.052 0.948 10 C 0.029 3.971 11 N -0.892 5.892 12 Si 0.942 3.058 13 H -0.273 1.273 14 H -0.288 1.288 15 H -0.279 1.279 16 C -0.095 4.095 17 C -0.141 4.141 18 C -0.196 4.196 19 C -0.220 4.220 20 C 0.390 3.610 21 O -0.502 6.502 22 C -0.070 4.070 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.151 0.849 27 H 0.123 0.877 28 H 0.259 0.741 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 2.013 2.897 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.125 4.125 3 C -0.098 4.098 4 C -0.151 4.151 5 C 0.006 3.994 6 C 0.079 3.921 7 H 0.041 0.959 8 C -0.567 4.567 9 H 0.070 0.930 10 C -0.172 4.172 11 N -0.529 5.529 12 Si 0.769 3.231 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.204 1.204 16 C -0.114 4.114 17 C -0.178 4.178 18 C -0.233 4.233 19 C -0.221 4.221 20 C 0.253 3.747 21 O -0.380 6.380 22 C -0.089 4.089 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.169 0.831 27 H 0.141 0.859 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.673 1.433 2.976 11.173 hybrid contribution 1.136 0.528 -0.878 1.530 sum -9.537 1.962 2.099 9.961 Atomic orbital electron populations 1.20763 0.88521 1.03696 1.03040 1.20114 0.97834 0.92156 1.02347 1.21576 0.93529 0.98660 0.96057 1.21112 0.94369 0.98022 1.01571 1.20608 0.96951 0.92027 0.89860 1.17534 0.85918 0.96116 0.92564 0.95869 1.21188 0.91643 1.34481 1.09403 0.92986 1.25527 0.97210 0.96369 0.98135 1.70104 1.01833 1.44201 1.36748 0.85874 0.76943 0.79607 0.80716 1.19864 1.21330 1.20420 1.21976 1.02091 0.96854 0.90434 1.22386 0.90942 1.01381 1.03108 1.23050 0.98543 1.02994 0.98760 1.20702 0.95208 0.95161 1.11008 1.24400 0.95628 0.86606 0.68027 1.90398 1.74386 1.35223 1.37960 1.21315 0.92425 0.98748 0.96380 0.90504 0.91148 0.89902 0.83150 0.85896 0.93171 0.91104 0.91054 0.90590 0.88660 0.90451 0.87463 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 10.01 71.24 0.71 -1.26 16 2 C -0.12 -3.45 5.87 -19.91 -0.12 -3.56 16 3 C -0.08 -2.29 9.69 22.35 0.22 -2.07 16 4 C -0.13 -4.71 8.77 22.22 0.20 -4.52 16 5 C 0.01 0.24 4.43 -19.56 -0.09 0.15 16 6 C 0.10 4.41 1.97 -12.29 -0.02 4.38 16 7 H 0.02 1.14 5.21 -2.39 -0.01 1.13 16 8 C -0.53 -26.77 8.14 25.60 0.21 -26.56 16 9 H 0.05 2.64 7.51 -2.91 -0.02 2.62 16 10 C 0.03 1.50 5.30 84.65 0.45 1.95 16 11 N -0.89 -47.12 11.44 21.45 0.25 -46.88 16 12 Si 0.94 41.46 29.54 68.60 2.03 43.49 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 16 C -0.09 -4.10 3.94 -10.79 -0.04 -4.14 16 17 C -0.14 -5.84 9.05 30.59 0.28 -5.57 16 18 C -0.20 -7.24 9.87 30.60 0.30 -6.93 16 19 C -0.22 -8.32 5.87 -20.15 -0.12 -8.44 16 20 C 0.39 15.15 10.97 70.17 0.77 15.92 16 21 O -0.50 -20.67 17.18 -2.95 -0.05 -20.73 16 22 C -0.07 -2.31 9.25 22.58 0.21 -2.10 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 25 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 26 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 27 H 0.12 4.43 7.98 -2.91 -0.02 4.41 16 28 H 0.26 13.32 8.31 -92.70 -0.77 12.55 16 29 H 0.07 3.24 8.11 -2.39 -0.02 3.22 16 30 H 0.07 3.15 8.05 -2.38 -0.02 3.13 16 31 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.11 4.19 5.93 -2.91 -0.02 4.17 16 35 H 0.13 3.96 7.66 -2.91 -0.02 3.94 16 Total: -1.00 -56.56 298.16 6.25 -50.31 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.07 Total: 16.56 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 2.95 Total: -42.75 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.25 Total: -46.88 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -56.56 6.25 -50.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.733 kcal (2) G-P(sol) polarization free energy of solvation -56.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds