Wall clock time and date at job start Mon Mar 30 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99704 * 2 1 4 4 H 1.48504 * 109.47335 * 240.00303 * 3 2 1 5 5 H 1.48506 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47063 * 120.00257 * 3 2 1 7 7 C 1.37876 * 120.00579 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99620 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47135 * 180.02562 * 10 9 7 12 12 C 1.38290 * 119.92686 * 270.29649 * 11 10 9 13 13 C 1.38103 * 120.07421 * 180.25792 * 12 11 10 14 14 C 1.38891 * 119.92518 * 359.46614 * 13 12 11 15 15 N 1.39851 * 120.07647 * 180.27808 * 14 13 12 16 16 C 1.36450 * 125.83790 * 359.69676 * 15 14 13 17 17 N 1.28259 * 114.55039 * 179.77337 * 16 15 14 18 18 C 1.46972 * 110.19959 * 0.49227 * 17 16 15 19 19 C 1.47282 * 125.84646 * 180.02562 * 15 14 13 20 20 C 1.38891 * 119.85597 * 0.25772 * 14 13 12 21 21 C 1.38108 * 119.92883 * 359.97438 * 20 14 13 22 22 H 0.96995 * 120.00114 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47003 * 59.99997 * 9 7 2 24 24 H 1.09001 * 109.47051 * 300.00371 * 9 7 2 25 25 H 1.09004 * 109.46716 * 59.99841 * 10 9 7 26 26 H 1.09000 * 109.47033 * 300.00491 * 10 9 7 27 27 H 1.08004 * 119.96559 * 0.02562 * 12 11 10 28 28 H 1.08002 * 120.04122 * 179.75037 * 13 12 11 29 29 H 1.08005 * 122.72164 * 359.97016 * 16 15 14 30 30 H 1.08998 * 110.54716 * 241.12137 * 18 17 16 31 31 H 1.09000 * 110.66995 * 118.36710 * 18 17 16 32 32 H 1.09003 * 110.69708 * 298.39544 * 19 15 14 33 33 H 1.09003 * 110.69599 * 61.60432 * 19 15 14 34 34 H 1.08005 * 120.03644 * 180.02562 * 20 14 13 35 35 H 1.07998 * 119.96917 * 180.02562 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9671 -0.0012 12 6 1.1413 -5.5619 1.1970 13 6 0.4555 -6.7606 1.2000 14 6 0.1083 -7.3632 -0.0022 15 7 -0.5913 -8.5742 -0.0028 16 6 -0.9868 -9.2689 1.1030 17 7 -1.6210 -10.3550 0.8514 18 6 -1.7336 -10.5521 -0.6007 19 6 -1.0214 -9.3212 -1.1971 20 6 0.4570 -6.7604 -1.2039 21 6 1.1470 -5.5641 -1.1999 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8895 26 1 2.8721 -3.6042 -0.8905 27 1 1.4073 -5.0903 2.1316 28 1 0.1854 -7.2266 2.1361 29 1 -0.7852 -8.9300 2.1084 30 1 -2.7804 -10.5730 -0.9039 31 1 -1.2299 -11.4697 -0.9047 32 1 -1.7136 -8.7275 -1.7943 33 1 -0.1602 -9.6250 -1.7922 34 1 0.1881 -7.2262 -2.1405 35 1 1.4182 -5.0945 -2.1339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260355572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:01 Heat of formation + Delta-G solvation = 47.463691 kcal Electronic energy + Delta-G solvation = -16341.189885 eV Core-core repulsion = 13724.879675 eV Total energy + Delta-G solvation = -2616.310210 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71147 -38.64778 -34.59614 -33.01440 -31.24997 -31.03640 -29.91606 -28.07619 -24.99125 -23.37055 -22.72212 -21.43581 -20.54893 -19.82392 -18.10404 -16.38741 -16.26295 -15.31345 -14.96331 -14.49800 -14.27039 -14.01558 -13.46969 -13.35581 -13.05679 -12.60242 -12.49093 -12.42738 -12.24977 -11.77518 -11.49789 -10.96519 -10.85435 -10.76005 -10.58777 -10.17411 -9.82379 -9.72494 -9.15034 -8.98573 -8.72103 -8.35333 -7.28890 -6.00437 -4.03807 1.49829 1.64149 2.51157 2.81241 3.32563 3.37220 3.39402 4.09550 4.20888 4.40485 4.45425 4.80554 4.86921 5.05529 5.16632 5.25682 5.34948 5.47374 5.49527 5.58413 5.61463 5.76034 5.94889 6.12907 6.13765 6.44912 6.63227 6.68282 6.70640 6.94635 7.11122 7.17891 7.52195 7.66411 7.67024 7.81317 7.99418 8.39863 9.03262 9.60330 11.10418 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.057230 B = 0.003770 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.132992 B = 7426.179502 C = 7443.742774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.077 4.077 11 C -0.084 4.084 12 C -0.082 4.082 13 C -0.165 4.165 14 C 0.167 3.833 15 N -0.578 5.578 16 C 0.346 3.654 17 N -0.571 5.571 18 C 0.020 3.980 19 C 0.070 3.930 20 C -0.162 4.162 21 C -0.083 4.083 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.190 0.810 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -17.347 -1.112 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.115 4.115 11 C -0.086 4.086 12 C -0.100 4.100 13 C -0.186 4.186 14 C 0.072 3.928 15 N -0.289 5.289 16 C 0.049 3.951 17 N -0.294 5.294 18 C -0.110 4.110 19 C -0.054 4.054 20 C -0.183 4.183 21 C -0.102 4.102 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.206 0.794 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.093 -18.054 -0.777 18.104 hybrid contribution 0.637 1.545 -0.651 1.794 sum -0.456 -16.509 -1.428 16.577 Atomic orbital electron populations 1.69960 1.06059 1.26728 1.50609 1.25022 0.94835 0.99228 0.95297 0.86662 0.79581 0.83145 0.78627 1.20236 1.21303 1.20222 1.21231 0.93027 0.91030 1.50906 0.92648 1.19079 0.93685 0.90483 0.97498 1.20796 0.98261 0.91159 1.01274 1.20330 0.98713 0.97098 0.92413 1.20902 0.96934 0.93796 0.98383 1.20608 1.04533 0.97917 0.95531 1.17460 0.95398 0.85130 0.94834 1.45777 1.55872 1.21091 1.06160 1.24783 0.88908 0.87886 0.93481 1.74264 1.23903 1.17723 1.13536 1.23154 1.01191 0.97058 0.89565 1.22778 0.99876 0.93918 0.88781 1.20593 1.04278 0.97850 0.95624 1.20904 0.97032 0.93880 0.98356 0.92927 0.96495 0.96452 0.92252 0.92313 0.85549 0.86271 0.79364 0.89396 0.89435 0.90196 0.90315 0.86532 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.75 4.96 -27.88 -0.14 0.62 16 10 C -0.08 -1.55 5.28 -27.89 -0.15 -1.70 16 11 C -0.08 -1.47 5.14 -104.59 -0.54 -2.01 16 12 C -0.08 -1.27 9.69 -39.61 -0.38 -1.66 16 13 C -0.16 -2.24 9.45 -39.39 -0.37 -2.61 16 14 C 0.17 2.27 6.64 -83.72 -0.56 1.71 16 15 N -0.58 -6.89 3.23 -114.78 -0.37 -7.26 16 16 C 0.35 3.89 11.59 -90.90 -1.05 2.84 16 17 N -0.57 -6.96 11.60 -61.70 -0.72 -7.67 16 18 C 0.02 0.19 8.05 -3.15 -0.03 0.17 16 19 C 0.07 0.69 6.58 -2.98 -0.02 0.67 16 20 C -0.16 -2.27 9.50 -39.39 -0.37 -2.64 16 21 C -0.08 -1.32 9.69 -39.61 -0.38 -1.70 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 26 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.12 1.28 6.60 -52.49 -0.35 0.94 16 29 H 0.19 1.62 6.79 -52.48 -0.36 1.26 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.12 1.38 7.32 -52.48 -0.38 1.00 16 35 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -31.37 298.03 -10.13 -41.51 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.85 Total: -1.72 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -4.40 Total: -19.71 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.35 Total: -41.00 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.37 -10.13 -41.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.971 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds