Wall clock time and date at job start Mon Mar 30 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99704 * 2 1 4 4 H 1.48504 * 109.47335 * 240.00303 * 3 2 1 5 5 H 1.48506 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47063 * 120.00257 * 3 2 1 7 7 C 1.37876 * 120.00579 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99620 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47135 * 180.02562 * 10 9 7 12 12 C 1.38290 * 119.92686 * 270.29649 * 11 10 9 13 13 C 1.38103 * 120.07421 * 180.25792 * 12 11 10 14 14 C 1.38891 * 119.92518 * 359.46614 * 13 12 11 15 15 N 1.39851 * 120.07647 * 180.27808 * 14 13 12 16 16 C 1.36450 * 125.83790 * 359.69676 * 15 14 13 17 17 N 1.28259 * 114.55039 * 179.77337 * 16 15 14 18 18 C 1.46972 * 110.19959 * 0.49227 * 17 16 15 19 19 C 1.47282 * 125.84646 * 180.02562 * 15 14 13 20 20 C 1.38891 * 119.85597 * 0.25772 * 14 13 12 21 21 C 1.38108 * 119.92883 * 359.97438 * 20 14 13 22 22 H 0.96995 * 120.00114 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47003 * 59.99997 * 9 7 2 24 24 H 1.09001 * 109.47051 * 300.00371 * 9 7 2 25 25 H 1.09004 * 109.46716 * 59.99841 * 10 9 7 26 26 H 1.09000 * 109.47033 * 300.00491 * 10 9 7 27 27 H 1.08004 * 119.96559 * 0.02562 * 12 11 10 28 28 H 1.08002 * 120.04122 * 179.75037 * 13 12 11 29 29 H 1.08005 * 122.72164 * 359.97016 * 16 15 14 30 30 H 1.08998 * 110.54716 * 241.12137 * 18 17 16 31 31 H 1.09000 * 110.66995 * 118.36710 * 18 17 16 32 32 H 1.09003 * 110.69708 * 298.39544 * 19 15 14 33 33 H 1.09003 * 110.69599 * 61.60432 * 19 15 14 34 34 H 1.08005 * 120.03644 * 180.02562 * 20 14 13 35 35 H 1.07998 * 119.96917 * 180.02562 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9671 -0.0012 12 6 1.1413 -5.5619 1.1970 13 6 0.4555 -6.7606 1.2000 14 6 0.1083 -7.3632 -0.0022 15 7 -0.5913 -8.5742 -0.0028 16 6 -0.9868 -9.2689 1.1030 17 7 -1.6210 -10.3550 0.8514 18 6 -1.7336 -10.5521 -0.6007 19 6 -1.0214 -9.3212 -1.1971 20 6 0.4570 -6.7604 -1.2039 21 6 1.1470 -5.5641 -1.1999 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8895 26 1 2.8721 -3.6042 -0.8905 27 1 1.4073 -5.0903 2.1316 28 1 0.1854 -7.2266 2.1361 29 1 -0.7852 -8.9300 2.1084 30 1 -2.7804 -10.5730 -0.9039 31 1 -1.2299 -11.4697 -0.9047 32 1 -1.7136 -8.7275 -1.7943 33 1 -0.1602 -9.6250 -1.7922 34 1 0.1881 -7.2262 -2.1405 35 1 1.4182 -5.0945 -2.1339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260355572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:01 Heat of formation + Delta-G solvation = 30.194476 kcal Electronic energy + Delta-G solvation = -16341.938734 eV Core-core repulsion = 13724.879675 eV Total energy + Delta-G solvation = -2617.059059 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.63003 -39.76608 -36.13347 -34.67180 -32.76725 -32.12738 -30.81755 -29.56840 -26.68854 -24.39551 -24.03473 -22.75864 -21.76310 -20.95592 -19.08567 -18.50834 -17.05999 -16.52486 -16.42771 -16.17656 -15.39263 -15.09451 -14.54985 -14.51533 -14.21647 -14.11577 -14.05806 -13.56330 -13.28434 -13.09971 -12.88182 -12.79308 -12.39867 -12.23349 -12.03563 -11.56620 -11.53314 -11.18140 -11.01971 -10.53242 -10.17951 -9.85342 -8.36850 -8.16262 -6.29594 0.37640 0.50123 1.41641 1.44599 1.52439 1.59840 1.90648 2.42638 2.93721 3.15107 3.44226 3.62369 3.88089 4.05441 4.09048 4.19496 4.25071 4.38677 4.57224 4.59484 4.71345 4.75359 4.87495 4.92167 4.94562 5.06004 5.19910 5.23807 5.47885 5.53197 5.62763 5.65729 5.87132 5.97229 5.97760 6.26038 6.53486 6.81208 6.87884 7.39831 8.93528 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.057230 B = 0.003770 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.132992 B = 7426.179502 C = 7443.742774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.036 3.964 10 C -0.062 4.062 11 C -0.116 4.116 12 C -0.089 4.089 13 C -0.163 4.163 14 C 0.175 3.825 15 N -0.582 5.582 16 C 0.342 3.658 17 N -0.593 5.593 18 C 0.018 3.982 19 C 0.067 3.933 20 C -0.164 4.164 21 C -0.092 4.092 22 H 0.263 0.737 23 H -0.012 1.012 24 H -0.010 1.010 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.211 0.789 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -18.368 -1.085 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.001 4.001 10 C -0.100 4.100 11 C -0.117 4.117 12 C -0.108 4.108 13 C -0.185 4.185 14 C 0.079 3.921 15 N -0.293 5.293 16 C 0.045 3.955 17 N -0.316 5.316 18 C -0.111 4.111 19 C -0.056 4.056 20 C -0.185 4.185 21 C -0.111 4.111 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.167 0.833 29 H 0.228 0.772 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.156 0.844 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.636 -19.113 -0.754 19.139 hybrid contribution 0.410 1.719 -0.665 1.888 sum -0.226 -17.394 -1.418 17.453 Atomic orbital electron populations 1.70103 1.07863 1.27782 1.51664 1.25986 0.95727 1.03361 0.94736 0.85512 0.78263 0.78083 0.79256 1.19113 1.21004 1.19070 1.21719 0.93670 0.92321 1.50570 0.91912 1.18927 0.94061 0.92385 0.94699 1.20498 0.97137 0.90818 1.01513 1.20159 1.00841 0.96740 0.93987 1.21020 0.97235 0.94653 0.97897 1.20870 1.03516 0.97074 0.97004 1.17565 0.94426 0.85466 0.94687 1.45900 1.55540 1.20586 1.07293 1.25212 0.88453 0.87569 0.94225 1.74250 1.24098 1.18151 1.15114 1.23257 1.01912 0.97564 0.88377 1.22942 1.00558 0.93755 0.88343 1.20773 1.03663 0.97167 0.96920 1.20986 0.97466 0.94720 0.97894 0.92832 0.99341 0.99177 0.91881 0.92088 0.85177 0.83269 0.77234 0.88627 0.88223 0.89593 0.89020 0.84357 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.54 -30.96 9.11 25.60 0.23 -30.72 16 8 H 0.06 3.38 7.74 -2.92 -0.02 3.36 16 9 C 0.04 1.93 4.96 29.85 0.15 2.07 16 10 C -0.06 -2.56 5.28 29.85 0.16 -2.40 16 11 C -0.12 -4.08 5.14 -19.84 -0.10 -4.18 16 12 C -0.09 -2.75 9.69 22.25 0.22 -2.54 16 13 C -0.16 -4.14 9.45 22.39 0.21 -3.93 16 14 C 0.17 4.40 6.64 38.17 0.25 4.65 16 15 N -0.58 -12.40 3.23 -517.06 -1.67 -14.07 16 16 C 0.34 6.81 11.59 180.45 2.09 8.90 16 17 N -0.59 -13.11 11.60 -349.11 -4.05 -17.16 16 18 C 0.02 0.31 8.05 86.70 0.70 1.01 16 19 C 0.07 1.14 6.58 86.64 0.57 1.71 16 20 C -0.16 -4.33 9.50 22.40 0.21 -4.12 16 21 C -0.09 -2.90 9.69 22.25 0.22 -2.68 16 22 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 23 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 25 H 0.06 2.48 8.09 -2.38 -0.02 2.46 16 26 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 27 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.15 2.78 6.60 -2.91 -0.02 2.76 16 29 H 0.21 2.98 6.79 -2.91 -0.02 2.96 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.14 2.97 7.32 -2.91 -0.02 2.95 16 35 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -67.76 298.03 3.02 -64.74 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.07 Total: 9.10 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 5.37 Total: -31.79 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -5.44 Total: -88.15 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -67.76 3.02 -64.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.931 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds