Wall clock time and date at job start Mon Mar 30 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33994 * 126.91005 * 2 1 4 4 O 1.34447 * 110.15783 * 180.02562 * 3 2 1 5 5 C 1.34827 * 110.90133 * 0.02562 * 4 3 2 6 6 C 1.40514 * 107.26051 * 359.97438 * 5 4 3 7 7 C 1.39377 * 120.15964 * 179.97438 * 6 5 4 8 8 C 1.37760 * 119.59925 * 0.25459 * 7 6 5 9 9 C 1.38721 * 120.27477 * 359.55689 * 8 7 6 10 10 C 1.37853 * 120.68991 * 0.41469 * 9 8 7 11 11 C 1.50708 * 120.02051 * 179.83463 * 10 9 8 12 12 C 1.53002 * 109.46979 * 126.06206 * 11 10 9 13 13 C 1.53001 * 109.46767 * 246.05868 * 11 10 9 14 14 C 1.50697 * 109.46927 * 6.05867 * 11 10 9 15 15 H 1.08004 * 120.00158 * 242.78671 * 14 11 10 16 16 C 1.37878 * 120.00114 * 62.79323 * 14 11 10 17 17 N 1.31515 * 119.99986 * 184.50613 * 16 14 11 18 18 Si 1.86799 * 119.99995 * 4.50405 * 16 14 11 19 19 H 1.48490 * 109.47094 * 92.92918 * 18 16 14 20 20 H 1.48496 * 109.47043 * 212.93213 * 18 16 14 21 21 H 1.48505 * 109.47185 * 332.93048 * 18 16 14 22 22 H 1.09003 * 109.47338 * 269.95754 * 1 2 3 23 23 H 1.09004 * 109.47500 * 29.95050 * 1 2 3 24 24 H 1.08998 * 109.47519 * 149.95408 * 1 2 3 25 25 H 1.07997 * 124.91794 * 0.06771 * 3 2 1 26 26 H 1.08004 * 120.19934 * 179.97438 * 7 6 5 27 27 H 1.07998 * 119.86398 * 179.71913 * 8 7 6 28 28 H 1.08001 * 119.65585 * 180.21977 * 9 8 7 29 29 H 1.08994 * 109.47008 * 65.89866 * 12 11 10 30 30 H 1.08997 * 109.46479 * 185.90179 * 12 11 10 31 31 H 1.08999 * 109.46741 * 305.89500 * 12 11 10 32 32 H 1.08995 * 109.47153 * 60.00157 * 13 11 10 33 33 H 1.09005 * 109.46797 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.47663 * 299.99839 * 13 11 10 35 35 H 0.97002 * 119.99993 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3117 1.0714 0.0000 4 8 3.5991 0.6839 -0.0006 5 6 3.6966 -0.6609 -0.0015 6 6 2.3884 -1.1738 -0.0010 7 6 2.1764 -2.5513 -0.0023 8 6 3.2568 -3.4061 0.0012 9 6 4.5486 -2.9005 -0.0033 10 6 4.7717 -1.5401 -0.0027 11 6 6.1814 -1.0073 -0.0038 12 6 6.3570 -0.0320 -1.1695 13 6 6.4528 -0.2802 1.3148 14 6 7.1506 -2.1512 -0.1555 15 1 7.8570 -2.3686 0.6321 16 6 7.1358 -2.9203 -1.2997 17 7 7.9197 -3.9719 -1.3954 18 14 6.0022 -2.4686 -2.7141 19 1 6.7319 -1.6050 -3.6768 20 1 5.5514 -3.7052 -3.4015 21 1 4.8221 -1.7363 -2.1881 22 1 -0.3634 -0.0008 1.0277 23 1 -0.3634 0.8904 -0.5131 24 1 -0.3634 -0.8895 -0.5145 25 1 1.9748 2.0975 0.0010 26 1 1.1712 -2.9463 -0.0015 27 1 3.0974 -4.4742 0.0048 28 1 5.3882 -3.5797 -0.0041 29 1 5.7319 0.8458 -1.0061 30 1 7.4016 0.2727 -1.2340 31 1 6.0628 -0.5198 -2.0988 32 1 6.3277 -0.9750 2.1452 33 1 7.4726 0.1048 1.3142 34 1 5.7518 0.5472 1.4245 35 1 7.9090 -4.5132 -2.2003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260357911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:12 Heat of formation + Delta-G solvation = 33.226900 kcal Electronic energy + Delta-G solvation = -18152.766255 eV Core-core repulsion = 15503.545940 eV Total energy + Delta-G solvation = -2649.220315 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.94285 -37.96577 -35.47504 -33.19799 -31.89063 -29.20586 -28.87568 -26.95452 -26.49032 -25.05294 -22.78075 -21.47597 -20.13657 -18.67353 -16.92476 -16.41254 -15.93691 -15.63547 -14.99739 -14.70009 -13.57240 -13.29806 -13.09761 -13.04987 -12.90565 -12.42104 -12.40861 -12.34822 -11.71819 -11.56043 -11.42348 -11.17003 -10.87705 -10.61343 -10.26431 -10.01524 -9.80047 -9.37606 -9.04037 -8.81750 -8.53432 -7.91596 -7.24323 -6.14995 -4.14647 1.55074 2.05387 2.80790 3.31166 3.38138 3.42371 3.48825 4.38023 4.44476 4.83671 5.01809 5.16912 5.22890 5.53923 5.65838 5.70980 5.86121 5.93652 5.94471 6.11209 6.14869 6.31085 6.31992 6.45670 6.59962 6.69454 6.74225 6.79571 6.85936 6.97505 7.10531 7.12777 7.26463 7.40843 7.53850 7.80265 7.86382 8.48129 8.90074 9.47674 10.96018 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.010172 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.710066 B = 2752.081309 C = 3100.133910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.189 4.189 3 C -0.012 4.012 4 O -0.189 6.189 5 C 0.052 3.948 6 C -0.139 4.139 7 C -0.103 4.103 8 C -0.138 4.138 9 C -0.090 4.090 10 C -0.023 4.023 11 C 0.065 3.935 12 C -0.143 4.143 13 C -0.117 4.117 14 C -0.509 4.509 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.894 5.894 18 Si 0.868 3.132 19 H -0.287 1.287 20 H -0.299 1.299 21 H -0.243 1.243 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.197 0.803 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.162 0.838 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.034 0.966 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 6.790 2.325 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.191 4.191 3 C -0.077 4.077 4 O -0.091 6.091 5 C 0.005 3.995 6 C -0.139 4.139 7 C -0.121 4.121 8 C -0.156 4.156 9 C -0.108 4.108 10 C -0.024 4.024 11 C 0.064 3.936 12 C -0.200 4.200 13 C -0.174 4.174 14 C -0.547 4.547 15 H 0.098 0.902 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.699 3.301 19 H -0.215 1.215 20 H -0.228 1.228 21 H -0.168 1.168 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.213 0.787 26 H 0.131 0.869 27 H 0.138 0.862 28 H 0.179 0.821 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.150 6.800 2.221 14.099 hybrid contribution -0.751 0.102 -1.032 1.281 sum -12.901 6.902 1.189 14.680 Atomic orbital electron populations 1.20061 0.89342 1.02162 1.01653 1.21044 0.96150 0.91762 1.10122 1.23572 0.80877 0.99089 1.04189 1.84024 1.27025 1.21761 1.76272 1.19670 0.95107 0.80602 1.04123 1.19714 0.92437 0.94045 1.07745 1.20260 0.98492 0.90662 1.02696 1.21108 0.92727 0.99241 1.02529 1.21567 0.97457 0.94953 0.96807 1.19640 0.94235 0.91094 0.97452 1.17625 0.88629 0.94608 0.92734 1.22258 1.00844 0.98329 0.98530 1.21641 1.00037 0.98432 0.97310 1.20869 1.17852 1.11567 1.04378 0.90219 1.25012 0.95004 0.94377 0.97920 1.69910 1.38823 1.16044 1.28285 0.87395 0.82959 0.76955 0.82784 1.21509 1.22758 1.16788 0.91760 0.91919 0.91782 0.78679 0.86871 0.86179 0.82098 0.94199 0.92484 0.94419 0.93507 0.93024 0.94719 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.43 36.00 0.38 -0.48 16 2 C -0.19 -2.98 6.35 -102.66 -0.65 -3.63 16 3 C -0.01 -0.18 11.89 29.24 0.35 0.17 16 4 O -0.19 -3.64 8.75 3.86 0.03 -3.61 16 5 C 0.05 1.09 6.15 -38.48 -0.24 0.86 16 6 C -0.14 -2.67 6.38 -105.16 -0.67 -3.34 16 7 C -0.10 -1.87 10.10 -39.33 -0.40 -2.27 16 8 C -0.14 -2.66 10.03 -39.58 -0.40 -3.05 16 9 C -0.09 -2.03 6.65 -39.54 -0.26 -2.29 16 10 C -0.02 -0.53 2.54 -104.52 -0.27 -0.80 16 11 C 0.06 1.52 0.59 -156.81 -0.09 1.43 16 12 C -0.14 -3.24 7.41 37.16 0.28 -2.97 16 13 C -0.12 -2.44 8.28 37.16 0.31 -2.13 16 14 C -0.51 -13.68 7.48 -34.44 -0.26 -13.94 16 15 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 16 C 0.08 2.20 4.07 -17.82 -0.07 2.13 16 17 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 18 Si 0.87 22.05 22.04 -169.99 -3.75 18.30 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 21 H -0.24 -6.05 4.45 56.52 0.25 -5.80 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 26 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 27 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.16 3.94 5.43 -52.49 -0.29 3.66 16 29 H 0.04 0.83 6.72 -51.93 -0.35 0.48 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.90 2.81 -51.93 -0.15 0.75 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.67 7.41 -51.93 -0.38 0.28 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -30.39 273.46 -5.49 -35.88 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.67 Total: 1.14 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -2.00 Total: -30.32 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.77 Total: -25.51 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: 0.03 Total: -3.61 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -3.75 Total: 18.30 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.39 -5.49 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.105 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds