Wall clock time and date at job start Mon Mar 30 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33994 * 126.91005 * 2 1 4 4 O 1.34447 * 110.15783 * 180.02562 * 3 2 1 5 5 C 1.34827 * 110.90133 * 0.02562 * 4 3 2 6 6 C 1.40514 * 107.26051 * 359.97438 * 5 4 3 7 7 C 1.39377 * 120.15964 * 179.97438 * 6 5 4 8 8 C 1.37760 * 119.59925 * 0.25459 * 7 6 5 9 9 C 1.38721 * 120.27477 * 359.55689 * 8 7 6 10 10 C 1.37853 * 120.68991 * 0.41469 * 9 8 7 11 11 C 1.50708 * 120.02051 * 179.83463 * 10 9 8 12 12 C 1.53002 * 109.46979 * 126.06206 * 11 10 9 13 13 C 1.53001 * 109.46767 * 246.05868 * 11 10 9 14 14 C 1.50697 * 109.46927 * 6.05867 * 11 10 9 15 15 H 1.08004 * 120.00158 * 242.78671 * 14 11 10 16 16 C 1.37878 * 120.00114 * 62.79323 * 14 11 10 17 17 N 1.31515 * 119.99986 * 184.50613 * 16 14 11 18 18 Si 1.86799 * 119.99995 * 4.50405 * 16 14 11 19 19 H 1.48490 * 109.47094 * 92.92918 * 18 16 14 20 20 H 1.48496 * 109.47043 * 212.93213 * 18 16 14 21 21 H 1.48505 * 109.47185 * 332.93048 * 18 16 14 22 22 H 1.09003 * 109.47338 * 269.95754 * 1 2 3 23 23 H 1.09004 * 109.47500 * 29.95050 * 1 2 3 24 24 H 1.08998 * 109.47519 * 149.95408 * 1 2 3 25 25 H 1.07997 * 124.91794 * 0.06771 * 3 2 1 26 26 H 1.08004 * 120.19934 * 179.97438 * 7 6 5 27 27 H 1.07998 * 119.86398 * 179.71913 * 8 7 6 28 28 H 1.08001 * 119.65585 * 180.21977 * 9 8 7 29 29 H 1.08994 * 109.47008 * 65.89866 * 12 11 10 30 30 H 1.08997 * 109.46479 * 185.90179 * 12 11 10 31 31 H 1.08999 * 109.46741 * 305.89500 * 12 11 10 32 32 H 1.08995 * 109.47153 * 60.00157 * 13 11 10 33 33 H 1.09005 * 109.46797 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.47663 * 299.99839 * 13 11 10 35 35 H 0.97002 * 119.99993 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3117 1.0714 0.0000 4 8 3.5991 0.6839 -0.0006 5 6 3.6966 -0.6609 -0.0015 6 6 2.3884 -1.1738 -0.0010 7 6 2.1764 -2.5513 -0.0023 8 6 3.2568 -3.4061 0.0012 9 6 4.5486 -2.9005 -0.0033 10 6 4.7717 -1.5401 -0.0027 11 6 6.1814 -1.0073 -0.0038 12 6 6.3570 -0.0320 -1.1695 13 6 6.4528 -0.2802 1.3148 14 6 7.1506 -2.1512 -0.1555 15 1 7.8570 -2.3686 0.6321 16 6 7.1358 -2.9203 -1.2997 17 7 7.9197 -3.9719 -1.3954 18 14 6.0022 -2.4686 -2.7141 19 1 6.7319 -1.6050 -3.6768 20 1 5.5514 -3.7052 -3.4015 21 1 4.8221 -1.7363 -2.1881 22 1 -0.3634 -0.0008 1.0277 23 1 -0.3634 0.8904 -0.5131 24 1 -0.3634 -0.8895 -0.5145 25 1 1.9748 2.0975 0.0010 26 1 1.1712 -2.9463 -0.0015 27 1 3.0974 -4.4742 0.0048 28 1 5.3882 -3.5797 -0.0041 29 1 5.7319 0.8458 -1.0061 30 1 7.4016 0.2727 -1.2340 31 1 6.0628 -0.5198 -2.0988 32 1 6.3277 -0.9750 2.1452 33 1 7.4726 0.1048 1.3142 34 1 5.7518 0.5472 1.4245 35 1 7.9090 -4.5132 -2.2003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260357911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:11 Heat of formation + Delta-G solvation = 14.923778 kcal Electronic energy + Delta-G solvation = -18153.559937 eV Core-core repulsion = 15503.545940 eV Total energy + Delta-G solvation = -2650.013998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.31876 -39.58746 -37.09510 -34.52246 -33.90273 -30.65195 -30.41391 -28.26388 -28.04030 -27.03677 -24.28496 -22.97103 -21.69478 -20.30229 -18.66653 -17.88205 -17.45552 -17.08687 -16.80866 -16.28706 -15.23321 -14.99226 -14.79236 -14.34640 -14.21799 -14.10122 -13.91635 -13.56772 -13.38015 -13.04644 -12.84636 -12.77622 -12.45187 -12.22443 -12.15951 -12.03074 -11.53424 -11.11800 -10.95580 -10.67116 -10.30148 -9.39778 -8.71672 -8.33175 -6.33895 0.13603 0.52448 1.25661 1.34680 1.42466 1.55316 2.07151 2.28774 2.89431 3.01738 3.62718 3.80645 4.09661 4.17291 4.32915 4.39091 4.50758 4.52354 4.62476 4.73375 4.85851 4.86907 4.90543 4.94042 5.00344 5.04547 5.11192 5.24168 5.36126 5.40794 5.48259 5.57945 5.70178 5.73131 5.85912 6.03513 6.32896 6.40226 6.72759 7.31159 8.81794 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.010172 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.710066 B = 2752.081309 C = 3100.133910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.194 4.194 3 C -0.008 4.008 4 O -0.205 6.205 5 C 0.029 3.971 6 C -0.151 4.151 7 C -0.094 4.094 8 C -0.144 4.144 9 C -0.116 4.116 10 C -0.046 4.046 11 C 0.059 3.941 12 C -0.139 4.139 13 C -0.110 4.110 14 C -0.502 4.502 15 H 0.044 0.956 16 C 0.043 3.957 17 N -0.938 5.938 18 Si 0.920 3.080 19 H -0.290 1.290 20 H -0.306 1.306 21 H -0.232 1.232 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.246 0.754 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 8.869 2.194 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.196 4.196 3 C -0.072 4.072 4 O -0.107 6.107 5 C -0.017 4.017 6 C -0.151 4.151 7 C -0.112 4.112 8 C -0.162 4.162 9 C -0.134 4.134 10 C -0.046 4.046 11 C 0.058 3.942 12 C -0.196 4.196 13 C -0.168 4.168 14 C -0.540 4.540 15 H 0.062 0.938 16 C -0.155 4.155 17 N -0.577 5.577 18 Si 0.750 3.250 19 H -0.218 1.218 20 H -0.234 1.234 21 H -0.156 1.156 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.262 0.738 26 H 0.169 0.831 27 H 0.161 0.839 28 H 0.146 0.854 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.669 8.899 2.104 18.142 hybrid contribution 0.281 -0.489 -0.883 1.047 sum -15.388 8.411 1.221 17.579 Atomic orbital electron populations 1.20178 0.86095 1.03644 1.03003 1.21523 0.98208 0.90105 1.09746 1.24596 0.79121 1.01253 1.02182 1.83999 1.29487 1.20686 1.76556 1.19608 0.95398 0.81623 1.05098 1.20270 0.92679 0.95474 1.06719 1.20658 0.99723 0.90305 1.00526 1.21340 0.91811 1.00840 1.02190 1.21357 0.98018 0.94693 0.99358 1.19406 0.94002 0.91650 0.99579 1.17625 0.88708 0.93611 0.94214 1.22187 1.01270 0.98727 0.97430 1.21564 1.00711 0.98571 0.95908 1.21033 1.17430 1.12562 1.02969 0.93805 1.25493 0.95980 0.94172 0.99855 1.70016 1.41059 1.17568 1.29078 0.86571 0.82015 0.76289 0.80118 1.21757 1.23442 1.15557 0.90363 0.89301 0.91530 0.73805 0.83142 0.83882 0.85414 0.92108 0.92499 0.95621 0.94164 0.92676 0.92947 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.43 71.23 0.74 -0.52 16 2 C -0.19 -5.23 6.35 -18.59 -0.12 -5.35 16 3 C -0.01 -0.20 11.89 66.85 0.79 0.60 16 4 O -0.21 -7.27 8.75 -9.09 -0.08 -7.35 16 5 C 0.03 1.19 6.15 22.98 0.14 1.34 16 6 C -0.15 -5.33 6.38 -20.21 -0.13 -5.46 16 7 C -0.09 -3.14 10.10 22.43 0.23 -2.91 16 8 C -0.14 -5.37 10.03 22.27 0.22 -5.15 16 9 C -0.12 -5.29 6.65 22.29 0.15 -5.14 16 10 C -0.05 -2.07 2.54 -19.80 -0.05 -2.12 16 11 C 0.06 2.80 0.59 -53.67 -0.03 2.77 16 12 C -0.14 -6.23 7.41 71.98 0.53 -5.70 16 13 C -0.11 -4.61 8.28 71.98 0.60 -4.01 16 14 C -0.50 -28.12 7.48 25.60 0.19 -27.93 16 15 H 0.04 2.70 7.99 -2.91 -0.02 2.68 16 16 C 0.04 2.50 4.07 84.65 0.34 2.84 16 17 N -0.94 -57.60 13.96 21.45 0.30 -57.31 16 18 Si 0.92 46.71 22.04 68.60 1.51 48.22 16 19 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 20 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 21 H -0.23 -11.32 4.45 99.48 0.44 -10.88 16 22 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.09 1.10 8.14 -2.38 -0.02 1.09 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.25 3.49 8.06 -2.91 -0.02 3.47 16 26 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 27 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 28 H 0.13 6.59 5.43 -2.91 -0.02 6.57 16 29 H 0.06 2.42 6.72 -2.39 -0.02 2.41 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.03 1.19 2.81 -2.39 -0.01 1.19 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.05 1.97 7.41 -2.39 -0.02 1.95 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -68.17 273.46 6.16 -62.01 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.82 Total: 11.17 kcal Atomic # 6 Polarization: -60.36 SS G_CDS: 3.61 Total: -56.75 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.30 Total: -57.31 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.08 Total: -7.35 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.51 Total: 48.22 kcal Total: -68.17 6.16 -62.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.931 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds