Wall clock time and date at job start Mon Mar 30 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30237 * 126.11182 * 2 1 4 4 N 1.39875 * 110.08692 * 180.02562 * 3 2 1 5 5 H 0.96999 * 125.46103 * 179.97438 * 4 3 2 6 6 C 1.37041 * 109.07707 * 359.97438 * 4 3 2 7 7 C 1.39281 * 133.85005 * 179.97438 * 6 4 3 8 8 C 1.36590 * 119.85225 * 180.02562 * 7 6 4 9 9 C 1.38962 * 120.81429 * 359.97438 * 8 7 6 10 10 C 1.36461 * 120.62914 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.18186 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47368 * 248.03092 * 11 10 9 13 13 C 1.53002 * 109.47268 * 8.03685 * 11 10 9 14 14 C 1.50707 * 109.46916 * 128.03463 * 11 10 9 15 15 H 1.07996 * 119.99784 * 358.40513 * 14 11 10 16 16 C 1.37877 * 120.00070 * 178.41318 * 14 11 10 17 17 N 1.31512 * 119.99943 * 191.25975 * 16 14 11 18 18 Si 1.86803 * 119.99766 * 11.25612 * 16 14 11 19 19 H 1.48501 * 109.46900 * 94.49490 * 18 16 14 20 20 H 1.48506 * 109.46902 * 214.48915 * 18 16 14 21 21 H 1.48496 * 109.47120 * 334.48970 * 18 16 14 22 22 C 1.39945 * 119.63742 * 0.02562 * 10 9 8 23 23 H 1.08998 * 109.47075 * 275.30635 * 1 2 3 24 24 H 1.09009 * 109.47016 * 35.30161 * 1 2 3 25 25 H 1.08996 * 109.47692 * 155.30310 * 1 2 3 26 26 H 1.08005 * 120.07522 * 0.03963 * 7 6 4 27 27 H 1.07999 * 119.59275 * 180.27813 * 8 7 6 28 28 H 1.08006 * 119.68361 * 180.02562 * 9 8 7 29 29 H 1.09010 * 109.46721 * 84.32520 * 12 11 10 30 30 H 1.08997 * 109.47025 * 204.31796 * 12 11 10 31 31 H 1.08994 * 109.47240 * 324.32360 * 12 11 10 32 32 H 1.09000 * 109.47155 * 53.48035 * 13 11 10 33 33 H 1.08998 * 109.47054 * 173.48630 * 13 11 10 34 34 H 1.09001 * 109.46902 * 293.48638 * 13 11 10 35 35 H 0.97000 * 119.99683 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2746 1.0521 0.0000 4 7 3.6190 0.6660 -0.0006 5 1 4.3779 1.2700 -0.0011 6 6 3.6919 -0.7025 -0.0004 7 6 4.7463 -1.6125 -0.0012 8 6 4.4870 -2.9536 -0.0012 9 6 3.1801 -3.4258 0.0001 10 6 2.1271 -2.5578 0.0009 11 6 0.7139 -3.0810 0.0017 12 6 0.0473 -2.7519 -1.3355 13 6 0.7316 -4.5976 0.2031 14 6 -0.0604 -2.4346 1.1214 15 1 0.4294 -1.7362 1.7837 16 6 -1.3941 -2.7350 1.3005 17 7 -2.1249 -2.0171 2.1252 18 14 -2.1630 -4.1617 0.3716 19 1 -2.1288 -5.3803 1.2195 20 1 -3.5715 -3.8319 0.0356 21 1 -1.4002 -4.4068 -0.8787 22 6 2.3669 -1.1791 -0.0002 23 1 -0.3633 0.0950 1.0232 24 1 -0.3633 0.8388 -0.5939 25 1 -0.3634 -0.9336 -0.4293 26 1 5.7667 -1.2586 -0.0016 27 1 5.3077 -3.6555 0.0027 28 1 2.9960 -4.4901 0.0004 29 1 0.3035 -3.5179 -2.0675 30 1 -1.0344 -2.7218 -1.2047 31 1 0.3979 -1.7816 -1.6872 32 1 1.3070 -4.8388 1.0969 33 1 -0.2896 -4.9607 0.3195 34 1 1.1900 -5.0739 -0.6636 35 1 -3.0633 -2.2282 2.2508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389027.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:28 Heat of formation + Delta-G solvation = 102.698068 kcal Electronic energy + Delta-G solvation = -18271.379548 eV Core-core repulsion = 15657.464481 eV Total energy + Delta-G solvation = -2613.915068 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78178 -37.53887 -35.60986 -32.15183 -31.67532 -29.32903 -29.11439 -26.82801 -26.13794 -24.92412 -22.84571 -21.49364 -19.97362 -18.74229 -16.87628 -16.43267 -15.64976 -15.14335 -14.69087 -14.35375 -13.81696 -13.44183 -13.11689 -12.56895 -12.30601 -12.22490 -12.08006 -11.80909 -11.58432 -11.39057 -11.06545 -10.76508 -10.45778 -10.23609 -10.04366 -9.97054 -9.78140 -9.33950 -8.92533 -8.74837 -8.42433 -7.98787 -7.24467 -6.12145 -4.05368 1.59028 2.14167 3.15425 3.26874 3.28820 3.37533 3.41119 4.37894 4.42526 5.14955 5.19690 5.24792 5.39913 5.51061 5.79579 5.90703 6.09620 6.16092 6.26690 6.35164 6.44254 6.48590 6.59245 6.65834 6.73404 6.80907 6.87303 6.95198 6.99977 7.12449 7.21724 7.45351 7.47626 7.63763 7.75045 7.87794 8.29731 8.48842 8.92621 9.49382 10.99246 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.010557 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.879427 B = 2651.610018 C = 3338.217587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.146 3.854 3 N -0.289 5.289 4 N -0.527 5.527 5 H 0.430 0.570 6 C 0.124 3.876 7 C -0.175 4.175 8 C -0.065 4.065 9 C -0.191 4.191 10 C 0.060 3.940 11 C 0.061 3.939 12 C -0.141 4.141 13 C -0.142 4.142 14 C -0.499 4.499 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.888 5.888 18 Si 0.868 3.132 19 H -0.288 1.288 20 H -0.302 1.302 21 H -0.244 1.244 22 C -0.161 4.161 23 H 0.096 0.904 24 H 0.044 0.956 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.940 -1.013 -5.777 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 N -0.104 5.104 4 N -0.240 5.240 5 H 0.273 0.727 6 C 0.008 3.992 7 C -0.198 4.198 8 C -0.085 4.085 9 C -0.211 4.211 10 C 0.058 3.942 11 C 0.060 3.940 12 C -0.198 4.198 13 C -0.199 4.199 14 C -0.536 4.536 15 H 0.098 0.902 16 C -0.128 4.128 17 N -0.525 5.525 18 Si 0.699 3.301 19 H -0.216 1.216 20 H -0.230 1.230 21 H -0.168 1.168 22 C -0.169 4.169 23 H 0.114 0.886 24 H 0.062 0.938 25 H 0.141 0.859 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.789 0.332 -5.691 10.475 hybrid contribution 0.113 -1.296 -0.157 1.310 sum 8.902 -0.964 -5.847 10.694 Atomic orbital electron populations 1.21048 0.84361 1.04121 1.04775 1.23854 0.97366 0.87950 0.93922 1.76515 0.86934 1.23658 1.23257 1.45759 1.05804 1.03169 1.69282 0.72717 1.18882 0.95935 0.84991 0.99345 1.19548 0.95974 0.92183 1.12072 1.20588 0.96812 0.94175 0.96959 1.20676 0.91711 1.00040 1.08669 1.19509 0.96312 0.90056 0.88331 1.17693 0.88823 0.92223 0.95221 1.22465 1.00804 0.99670 0.96911 1.22376 1.00002 0.97776 0.99725 1.20802 0.94068 1.25817 1.12945 0.90158 1.24921 0.96780 0.95960 0.95165 1.69902 1.07389 1.38063 1.37166 0.87526 0.77434 0.83296 0.81832 1.21577 1.23003 1.16821 1.19609 0.90775 0.94199 1.12269 0.88582 0.93761 0.85931 0.86913 0.86406 0.85738 0.94948 0.92332 0.92984 0.92789 0.93944 0.94652 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 8.00 36.01 0.29 -1.51 16 2 C 0.15 3.12 6.71 -80.19 -0.54 2.58 16 3 N -0.29 -5.84 12.55 34.84 0.44 -5.41 16 4 N -0.53 -9.19 7.37 32.36 0.24 -8.95 16 5 H 0.43 5.78 8.96 -182.77 -1.64 4.15 16 6 C 0.12 2.30 7.34 -84.18 -0.62 1.68 16 7 C -0.18 -2.76 10.03 -39.79 -0.40 -3.16 16 8 C -0.06 -1.00 9.96 -39.91 -0.40 -1.39 16 9 C -0.19 -3.39 8.92 -39.95 -0.36 -3.75 16 10 C 0.06 1.24 4.68 -104.62 -0.49 0.75 16 11 C 0.06 1.32 0.48 -156.81 -0.08 1.24 16 12 C -0.14 -2.87 5.98 37.16 0.22 -2.64 16 13 C -0.14 -2.84 6.40 37.16 0.24 -2.61 16 14 C -0.50 -12.45 4.86 -34.44 -0.17 -12.61 16 15 H 0.08 2.26 6.66 -52.49 -0.35 1.91 16 16 C 0.07 1.92 5.17 -17.82 -0.09 1.82 16 17 N -0.89 -24.74 13.96 55.43 0.77 -23.96 16 18 Si 0.87 19.98 22.68 -169.99 -3.86 16.12 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.30 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.24 -5.12 4.53 56.52 0.26 -4.87 16 22 C -0.16 -3.37 5.18 -105.21 -0.55 -3.91 16 23 H 0.10 2.26 7.40 -51.93 -0.38 1.88 16 24 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.12 2.68 2.68 -51.93 -0.14 2.54 16 26 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 27 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.12 2.00 5.91 -52.48 -0.31 1.69 16 29 H 0.03 0.59 7.80 -51.92 -0.41 0.19 16 30 H 0.06 1.22 4.32 -51.93 -0.22 1.00 16 31 H 0.05 1.02 5.70 -51.93 -0.30 0.73 16 32 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 33 H 0.04 0.89 2.71 -51.93 -0.14 0.75 16 34 H 0.03 0.61 7.39 -51.93 -0.38 0.23 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -28.34 258.62 -6.65 -34.99 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.21 Total: 6.84 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -2.93 Total: -23.52 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 1.45 Total: -38.32 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -3.86 Total: 16.12 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.34 -6.65 -34.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389027.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.688 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds