Wall clock time and date at job start Mon Mar 30 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30237 * 126.11182 * 2 1 4 4 N 1.39875 * 110.08692 * 180.02562 * 3 2 1 5 5 H 0.96999 * 125.46103 * 179.97438 * 4 3 2 6 6 C 1.37041 * 109.07707 * 359.97438 * 4 3 2 7 7 C 1.39281 * 133.85005 * 179.97438 * 6 4 3 8 8 C 1.36590 * 119.85225 * 180.02562 * 7 6 4 9 9 C 1.38962 * 120.81429 * 359.97438 * 8 7 6 10 10 C 1.36461 * 120.62914 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.18186 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47368 * 248.03092 * 11 10 9 13 13 C 1.53002 * 109.47268 * 8.03685 * 11 10 9 14 14 C 1.50707 * 109.46916 * 128.03463 * 11 10 9 15 15 H 1.07996 * 119.99784 * 358.40513 * 14 11 10 16 16 C 1.37877 * 120.00070 * 178.41318 * 14 11 10 17 17 N 1.31512 * 119.99943 * 191.25975 * 16 14 11 18 18 Si 1.86803 * 119.99766 * 11.25612 * 16 14 11 19 19 H 1.48501 * 109.46900 * 94.49490 * 18 16 14 20 20 H 1.48506 * 109.46902 * 214.48915 * 18 16 14 21 21 H 1.48496 * 109.47120 * 334.48970 * 18 16 14 22 22 C 1.39945 * 119.63742 * 0.02562 * 10 9 8 23 23 H 1.08998 * 109.47075 * 275.30635 * 1 2 3 24 24 H 1.09009 * 109.47016 * 35.30161 * 1 2 3 25 25 H 1.08996 * 109.47692 * 155.30310 * 1 2 3 26 26 H 1.08005 * 120.07522 * 0.03963 * 7 6 4 27 27 H 1.07999 * 119.59275 * 180.27813 * 8 7 6 28 28 H 1.08006 * 119.68361 * 180.02562 * 9 8 7 29 29 H 1.09010 * 109.46721 * 84.32520 * 12 11 10 30 30 H 1.08997 * 109.47025 * 204.31796 * 12 11 10 31 31 H 1.08994 * 109.47240 * 324.32360 * 12 11 10 32 32 H 1.09000 * 109.47155 * 53.48035 * 13 11 10 33 33 H 1.08998 * 109.47054 * 173.48630 * 13 11 10 34 34 H 1.09001 * 109.46902 * 293.48638 * 13 11 10 35 35 H 0.97000 * 119.99683 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2746 1.0521 0.0000 4 7 3.6190 0.6660 -0.0006 5 1 4.3779 1.2700 -0.0011 6 6 3.6919 -0.7025 -0.0004 7 6 4.7463 -1.6125 -0.0012 8 6 4.4870 -2.9536 -0.0012 9 6 3.1801 -3.4258 0.0001 10 6 2.1271 -2.5578 0.0009 11 6 0.7139 -3.0810 0.0017 12 6 0.0473 -2.7519 -1.3355 13 6 0.7316 -4.5976 0.2031 14 6 -0.0604 -2.4346 1.1214 15 1 0.4294 -1.7362 1.7837 16 6 -1.3941 -2.7350 1.3005 17 7 -2.1249 -2.0171 2.1252 18 14 -2.1630 -4.1617 0.3716 19 1 -2.1288 -5.3803 1.2195 20 1 -3.5715 -3.8319 0.0356 21 1 -1.4002 -4.4068 -0.8787 22 6 2.3669 -1.1791 -0.0002 23 1 -0.3633 0.0950 1.0232 24 1 -0.3633 0.8388 -0.5939 25 1 -0.3634 -0.9336 -0.4293 26 1 5.7667 -1.2586 -0.0016 27 1 5.3077 -3.6555 0.0027 28 1 2.9960 -4.4901 0.0004 29 1 0.3035 -3.5179 -2.0675 30 1 -1.0344 -2.7218 -1.2047 31 1 0.3979 -1.7816 -1.6872 32 1 1.3070 -4.8388 1.0969 33 1 -0.2896 -4.9607 0.3195 34 1 1.1900 -5.0739 -0.6636 35 1 -3.0633 -2.2282 2.2508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389027.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:28 Heat of formation + Delta-G solvation = 84.224080 kcal Electronic energy + Delta-G solvation = -18272.180641 eV Core-core repulsion = 15657.464481 eV Total energy + Delta-G solvation = -2614.716160 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.22575 -39.06732 -37.09817 -33.93408 -33.34232 -30.78696 -30.56195 -28.36932 -27.73593 -26.81601 -24.31077 -22.89595 -21.55444 -20.31481 -18.41091 -18.09862 -17.22096 -16.84296 -16.08308 -15.85786 -15.24888 -15.00214 -14.87436 -14.20976 -14.04557 -13.86814 -13.64896 -13.43762 -13.08492 -12.87835 -12.57492 -12.28853 -12.16655 -11.94787 -11.64352 -11.55223 -11.34490 -11.07581 -10.56663 -10.44374 -10.37012 -9.40081 -8.63446 -8.12891 -6.07370 0.19420 0.76195 1.42817 1.49956 1.56724 1.63788 1.94489 2.46099 3.03631 3.22065 3.76315 3.81673 3.98340 4.21039 4.46645 4.55149 4.56670 4.68381 4.80823 4.87560 4.91530 4.93549 5.02741 5.10368 5.17795 5.19226 5.28877 5.43097 5.53028 5.62948 5.71252 5.77396 5.89822 6.06766 6.16267 6.52234 6.59356 6.81038 6.89626 7.49198 9.01998 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.010557 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.879427 B = 2651.610018 C = 3338.217587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.119 3.881 3 N -0.301 5.301 4 N -0.513 5.513 5 H 0.447 0.553 6 C 0.113 3.887 7 C -0.165 4.165 8 C -0.057 4.057 9 C -0.188 4.188 10 C 0.026 3.974 11 C 0.057 3.943 12 C -0.140 4.140 13 C -0.142 4.142 14 C -0.476 4.476 15 H 0.034 0.966 16 C 0.024 3.976 17 N -0.938 5.938 18 Si 0.918 3.082 19 H -0.293 1.293 20 H -0.315 1.315 21 H -0.206 1.206 22 C -0.192 4.192 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.116 0.884 26 H 0.153 0.847 27 H 0.164 0.836 28 H 0.143 0.857 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.983 -2.851 -7.530 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 N -0.117 5.117 4 N -0.229 5.229 5 H 0.294 0.706 6 C -0.003 4.003 7 C -0.187 4.187 8 C -0.077 4.077 9 C -0.208 4.208 10 C 0.024 3.976 11 C 0.056 3.944 12 C -0.197 4.197 13 C -0.198 4.198 14 C -0.514 4.514 15 H 0.052 0.948 16 C -0.173 4.173 17 N -0.578 5.578 18 Si 0.748 3.252 19 H -0.221 1.221 20 H -0.244 1.244 21 H -0.129 1.129 22 C -0.200 4.200 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.134 0.866 26 H 0.170 0.830 27 H 0.182 0.818 28 H 0.161 0.839 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.873 -1.505 -7.465 14.105 hybrid contribution -0.645 -0.640 0.433 1.007 sum 11.227 -2.145 -7.031 13.420 Atomic orbital electron populations 1.20776 0.85393 1.04387 1.02616 1.23787 0.97211 0.89063 0.95668 1.76385 0.88386 1.23822 1.23088 1.45711 1.05286 1.03552 1.68372 0.70624 1.19248 0.95956 0.85369 0.99727 1.20067 0.96991 0.91906 1.09689 1.21083 0.97056 0.94831 0.94756 1.20998 0.92100 1.00577 1.07093 1.19519 0.96363 0.90404 0.91319 1.17661 0.89570 0.93134 0.94033 1.22393 0.99806 1.00571 0.96899 1.22333 0.99686 0.96387 1.01428 1.20829 0.93930 1.23976 1.12698 0.94785 1.25561 0.97393 0.98136 0.96231 1.70060 1.07493 1.40275 1.39984 0.86738 0.76178 0.80041 0.82279 1.22116 1.24431 1.12867 1.19847 0.91878 0.94514 1.13743 0.92212 0.92263 0.86629 0.82967 0.81848 0.83922 0.92403 0.93542 0.93145 0.92614 0.95076 0.91208 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.30 8.00 71.24 0.57 -2.73 16 2 C 0.12 5.21 6.71 44.79 0.30 5.51 16 3 N -0.30 -12.24 12.55 -43.70 -0.55 -12.79 16 4 N -0.51 -17.11 7.37 -51.54 -0.38 -17.49 16 5 H 0.45 11.03 8.96 -213.47 -1.91 9.12 16 6 C 0.11 3.92 7.34 39.21 0.29 4.21 16 7 C -0.16 -4.41 10.03 22.14 0.22 -4.19 16 8 C -0.06 -1.45 9.96 22.06 0.22 -1.23 16 9 C -0.19 -5.95 8.92 22.03 0.20 -5.75 16 10 C 0.03 1.04 4.68 -19.87 -0.09 0.95 16 11 C 0.06 2.38 0.48 -53.67 -0.03 2.35 16 12 C -0.14 -5.45 5.98 71.98 0.43 -5.02 16 13 C -0.14 -5.27 6.40 71.98 0.46 -4.81 16 14 C -0.48 -24.52 4.86 25.60 0.12 -24.40 16 15 H 0.03 2.04 6.66 -2.91 -0.02 2.02 16 16 C 0.02 1.28 5.17 84.66 0.44 1.72 16 17 N -0.94 -55.21 13.96 21.45 0.30 -54.91 16 18 Si 0.92 41.45 22.68 68.60 1.56 43.01 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.31 -14.78 7.11 99.48 0.71 -14.08 16 21 H -0.21 -8.00 4.53 99.48 0.45 -7.55 16 22 C -0.19 -7.93 5.18 -20.24 -0.10 -8.04 16 23 H 0.06 3.07 7.40 -2.39 -0.02 3.05 16 24 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.12 5.28 2.68 -2.39 -0.01 5.27 16 26 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 27 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.14 3.90 5.91 -2.91 -0.02 3.89 16 29 H 0.06 1.93 7.80 -2.38 -0.02 1.92 16 30 H 0.05 1.89 4.32 -2.39 -0.01 1.88 16 31 H 0.05 1.96 5.70 -2.39 -0.01 1.95 16 32 H 0.05 2.02 7.50 -2.39 -0.02 2.00 16 33 H 0.03 1.22 2.71 -2.39 -0.01 1.21 16 34 H 0.07 2.11 7.39 -2.39 -0.02 2.09 16 35 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -64.63 258.62 2.92 -61.71 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -1.03 Total: 21.89 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 3.03 Total: -41.42 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -0.63 Total: -85.19 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.56 Total: 43.01 kcal Total: -64.63 2.92 -61.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389027.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.933 kcal (2) G-P(sol) polarization free energy of solvation -64.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds