Wall clock time and date at job start Mon Mar 30 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86795 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47271 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46949 * 119.99949 * 3 2 1 6 6 H 1.48501 * 109.47514 * 239.99876 * 3 2 1 7 7 C 1.39942 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99880 * 153.33258 * 7 2 1 9 9 C 1.41045 * 120.00029 * 333.33683 * 7 2 1 10 10 C 1.40741 * 120.30484 * 333.41992 * 9 7 2 11 11 C 1.36450 * 119.95022 * 180.02562 * 10 9 7 12 12 C 1.38888 * 120.58456 * 0.02562 * 11 10 9 13 13 C 1.38185 * 120.62343 * 359.97438 * 12 11 10 14 14 C 1.38708 * 120.02976 * 359.72160 * 13 12 11 15 15 N 1.38957 * 120.28908 * 180.27836 * 14 13 12 16 16 C 1.37189 * 119.99922 * 324.12638 * 15 14 13 17 17 N 1.27582 * 117.85559 * 354.18864 * 16 15 14 18 18 C 1.45683 * 124.97405 * 180.59597 * 17 16 15 19 19 C 1.52971 * 110.51062 * 342.22813 * 18 17 16 20 20 C 1.53453 * 108.43055 * 49.65729 * 19 18 17 21 21 C 1.50113 * 117.85061 * 173.92880 * 16 15 14 22 22 H 0.96998 * 119.99620 * 173.29193 * 1 2 3 23 23 H 1.08006 * 120.02265 * 359.97402 * 10 9 7 24 24 H 1.07998 * 119.70798 * 179.97438 * 11 10 9 25 25 H 1.07997 * 119.68796 * 180.02562 * 12 11 10 26 26 H 1.08005 * 119.98361 * 179.97438 * 13 12 11 27 27 H 0.97005 * 120.00089 * 144.12895 * 15 14 13 28 28 H 1.08995 * 109.26627 * 102.48994 * 18 17 16 29 29 H 1.08999 * 109.26728 * 221.96226 * 18 17 16 30 30 H 1.09002 * 109.67441 * 169.38865 * 19 18 17 31 31 H 1.08997 * 109.67581 * 289.88734 * 19 18 17 32 32 H 1.08996 * 109.72514 * 53.51926 * 20 19 18 33 33 H 1.08996 * 109.72385 * 174.18184 * 20 19 18 34 34 H 1.09002 * 109.39841 * 283.78105 * 21 16 15 35 35 H 1.08997 * 109.40191 * 43.51760 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7464 0.0006 5 1 3.0964 1.6964 1.2126 6 1 3.0964 1.6965 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0023 -1.2614 -0.4203 9 6 1.4157 -2.3687 0.5471 10 6 0.4375 -2.2573 1.5528 11 6 -0.1307 -3.3813 2.0779 12 6 0.2475 -4.6401 1.6292 13 6 1.2055 -4.7772 0.6428 14 6 1.7954 -3.6517 0.0867 15 7 2.7551 -3.7832 -0.9096 16 6 3.6428 -4.8286 -0.8732 17 7 3.6252 -5.5903 0.1502 18 6 4.5043 -6.7337 0.3554 19 6 5.1356 -7.1687 -0.9683 20 6 5.7262 -5.9297 -1.6545 21 6 4.5672 -5.0047 -2.0427 22 1 -0.4849 -0.8343 -0.0981 23 1 0.1375 -1.2829 1.9093 24 1 -0.8807 -3.2912 2.8498 25 1 -0.2120 -5.5199 2.0546 26 1 1.4922 -5.7612 0.3019 27 1 2.7975 -3.1359 -1.6308 28 1 5.2923 -6.4601 1.0570 29 1 3.9275 -7.5614 0.7680 30 1 5.9265 -7.8940 -0.7768 31 1 4.3750 -7.6157 -1.6083 32 1 6.3988 -5.4148 -0.9685 33 1 6.2715 -6.2296 -2.5493 34 1 4.0165 -5.4392 -2.8771 35 1 4.9649 -4.0342 -2.3393 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:21 Heat of formation + Delta-G solvation = 29.068619 kcal Electronic energy + Delta-G solvation = -17325.188381 eV Core-core repulsion = 14708.080501 eV Total energy + Delta-G solvation = -2617.107880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.17991 -37.52507 -34.66311 -33.70166 -31.42701 -30.13793 -29.07654 -27.56104 -24.93681 -23.80650 -22.28118 -20.84708 -20.30895 -18.06939 -17.75424 -16.35519 -15.72176 -14.88015 -14.56485 -14.15208 -13.94332 -13.76553 -13.61863 -13.22226 -12.80448 -12.35816 -12.11410 -11.89791 -11.49520 -11.40340 -11.01698 -10.88622 -10.84475 -10.53974 -10.40363 -10.30225 -9.82990 -9.42224 -8.92333 -8.17649 -8.11303 -7.43623 -7.20143 -6.52213 -4.30150 2.72361 2.92748 3.17862 3.31532 3.38993 3.42234 4.05576 4.12314 4.66912 4.80969 4.88092 4.97222 5.19776 5.42670 5.59228 5.66067 5.71543 5.87090 5.92870 5.98054 6.09956 6.28643 6.34594 6.36064 6.52536 6.66500 7.07482 7.19407 7.44916 7.59882 7.67596 7.88636 8.03641 8.16849 8.22307 8.46924 8.48459 8.90469 8.99901 9.27921 10.12651 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.007462 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.444518 B = 3751.447161 C = 4688.090512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.042 3.958 3 Si 1.061 2.939 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.071 0.929 9 C 0.085 3.915 10 C -0.205 4.205 11 C -0.101 4.101 12 C -0.239 4.239 13 C -0.065 4.065 14 C 0.040 3.960 15 N -0.637 5.637 16 C 0.404 3.596 17 N -0.621 5.621 18 C 0.085 3.915 19 C -0.156 4.156 20 C -0.113 4.113 21 C -0.125 4.125 22 H 0.298 0.702 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.404 0.596 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.769 -6.784 -4.384 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.179 4.179 3 Si 0.885 3.115 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.090 0.910 9 C 0.080 3.920 10 C -0.225 4.225 11 C -0.120 4.120 12 C -0.259 4.259 13 C -0.086 4.086 14 C -0.055 4.055 15 N -0.265 5.265 16 C 0.124 3.876 17 N -0.347 5.347 18 C -0.046 4.046 19 C -0.195 4.195 20 C -0.151 4.151 21 C -0.166 4.166 22 H 0.111 0.889 23 H 0.121 0.879 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.240 0.760 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.109 -5.360 -3.458 9.551 hybrid contribution 0.829 -1.636 -0.873 2.031 sum 7.938 -6.996 -4.332 11.433 Atomic orbital electron populations 1.70451 1.08199 1.34179 1.29520 1.26871 0.95631 1.03990 0.91434 0.83703 0.75703 0.74275 0.77823 1.19997 1.20193 1.20355 1.20231 1.03475 0.94428 1.37869 0.91048 1.17519 0.92582 0.91184 0.90718 1.20670 1.03830 0.97113 1.00910 1.20324 0.99192 0.93274 0.99205 1.20215 1.05051 0.95569 1.05052 1.20461 0.94489 0.96749 0.96882 1.17538 0.97509 0.93464 0.96961 1.41395 1.31437 1.26521 1.27151 1.20643 0.88012 0.88853 0.90050 1.69771 1.30036 1.10790 1.24149 1.21591 0.94620 0.93139 0.95274 1.22198 1.00609 0.97573 0.99076 1.21559 0.96911 0.96048 1.00607 1.21202 0.96654 1.01381 0.97404 0.88865 0.87891 0.89617 0.89513 0.87718 0.76032 0.92258 0.91242 0.91652 0.91881 0.91588 0.91367 0.89857 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.13 12.35 55.55 0.69 -20.44 16 2 C 0.04 1.06 4.89 -17.32 -0.08 0.98 16 3 Si 1.06 21.58 30.01 -169.99 -5.10 16.48 16 4 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.53 -13.76 8.31 -37.88 -0.31 -14.07 16 8 H 0.07 1.79 7.48 -52.49 -0.39 1.40 16 9 C 0.08 2.23 5.27 -106.65 -0.56 1.67 16 10 C -0.21 -5.37 7.97 -39.28 -0.31 -5.68 16 11 C -0.10 -2.44 9.97 -39.99 -0.40 -2.84 16 12 C -0.24 -5.64 10.04 -39.36 -0.39 -6.03 16 13 C -0.06 -1.55 8.51 -39.43 -0.34 -1.88 16 14 C 0.04 0.98 6.22 -83.22 -0.52 0.46 16 15 N -0.64 -13.23 4.94 -7.99 -0.04 -13.27 16 16 C 0.40 7.40 7.25 -156.06 -1.13 6.27 16 17 N -0.62 -12.13 7.14 -59.26 -0.42 -12.55 16 18 C 0.08 1.31 7.19 -4.50 -0.03 1.27 16 19 C -0.16 -1.90 6.05 -26.51 -0.16 -2.06 16 20 C -0.11 -1.33 6.08 -26.35 -0.16 -1.49 16 21 C -0.12 -1.68 5.94 -28.02 -0.17 -1.84 16 22 H 0.30 8.11 6.90 -40.82 -0.28 7.83 16 23 H 0.10 2.77 6.63 -52.48 -0.35 2.42 16 24 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.10 2.43 6.48 -52.48 -0.34 2.09 16 27 H 0.40 7.79 8.00 -40.82 -0.33 7.46 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 286.15 15.07 4.31 4.31 Total: -1.00 -28.59 286.15 -9.85 -38.44 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.71 Total: 12.29 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -4.57 Total: -25.25 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.22 Total: -46.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.10 Total: 16.48 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.59 -9.85 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.506 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds