Wall clock time and date at job start Mon Mar 30 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86795 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47271 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46949 * 119.99949 * 3 2 1 6 6 H 1.48501 * 109.47514 * 239.99876 * 3 2 1 7 7 C 1.39942 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99880 * 153.33258 * 7 2 1 9 9 C 1.41045 * 120.00029 * 333.33683 * 7 2 1 10 10 C 1.40741 * 120.30484 * 333.41992 * 9 7 2 11 11 C 1.36450 * 119.95022 * 180.02562 * 10 9 7 12 12 C 1.38888 * 120.58456 * 0.02562 * 11 10 9 13 13 C 1.38185 * 120.62343 * 359.97438 * 12 11 10 14 14 C 1.38708 * 120.02976 * 359.72160 * 13 12 11 15 15 N 1.38957 * 120.28908 * 180.27836 * 14 13 12 16 16 C 1.37189 * 119.99922 * 324.12638 * 15 14 13 17 17 N 1.27582 * 117.85559 * 354.18864 * 16 15 14 18 18 C 1.45683 * 124.97405 * 180.59597 * 17 16 15 19 19 C 1.52971 * 110.51062 * 342.22813 * 18 17 16 20 20 C 1.53453 * 108.43055 * 49.65729 * 19 18 17 21 21 C 1.50113 * 117.85061 * 173.92880 * 16 15 14 22 22 H 0.96998 * 119.99620 * 173.29193 * 1 2 3 23 23 H 1.08006 * 120.02265 * 359.97402 * 10 9 7 24 24 H 1.07998 * 119.70798 * 179.97438 * 11 10 9 25 25 H 1.07997 * 119.68796 * 180.02562 * 12 11 10 26 26 H 1.08005 * 119.98361 * 179.97438 * 13 12 11 27 27 H 0.97005 * 120.00089 * 144.12895 * 15 14 13 28 28 H 1.08995 * 109.26627 * 102.48994 * 18 17 16 29 29 H 1.08999 * 109.26728 * 221.96226 * 18 17 16 30 30 H 1.09002 * 109.67441 * 169.38865 * 19 18 17 31 31 H 1.08997 * 109.67581 * 289.88734 * 19 18 17 32 32 H 1.08996 * 109.72514 * 53.51926 * 20 19 18 33 33 H 1.08996 * 109.72385 * 174.18184 * 20 19 18 34 34 H 1.09002 * 109.39841 * 283.78105 * 21 16 15 35 35 H 1.08997 * 109.40191 * 43.51760 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7464 0.0006 5 1 3.0964 1.6964 1.2126 6 1 3.0964 1.6965 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0023 -1.2614 -0.4203 9 6 1.4157 -2.3687 0.5471 10 6 0.4375 -2.2573 1.5528 11 6 -0.1307 -3.3813 2.0779 12 6 0.2475 -4.6401 1.6292 13 6 1.2055 -4.7772 0.6428 14 6 1.7954 -3.6517 0.0867 15 7 2.7551 -3.7832 -0.9096 16 6 3.6428 -4.8286 -0.8732 17 7 3.6252 -5.5903 0.1502 18 6 4.5043 -6.7337 0.3554 19 6 5.1356 -7.1687 -0.9683 20 6 5.7262 -5.9297 -1.6545 21 6 4.5672 -5.0047 -2.0427 22 1 -0.4849 -0.8343 -0.0981 23 1 0.1375 -1.2829 1.9093 24 1 -0.8807 -3.2912 2.8498 25 1 -0.2120 -5.5199 2.0546 26 1 1.4922 -5.7612 0.3019 27 1 2.7975 -3.1359 -1.6308 28 1 5.2923 -6.4601 1.0570 29 1 3.9275 -7.5614 0.7680 30 1 5.9265 -7.8940 -0.7768 31 1 4.3750 -7.6157 -1.6083 32 1 6.3988 -5.4148 -0.9685 33 1 6.2715 -6.2296 -2.5493 34 1 4.0165 -5.4392 -2.8771 35 1 4.9649 -4.0342 -2.3393 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:21 Heat of formation + Delta-G solvation = 14.190266 kcal Electronic energy + Delta-G solvation = -17325.833555 eV Core-core repulsion = 14708.080501 eV Total energy + Delta-G solvation = -2617.753054 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68631 -39.15056 -36.19516 -35.58771 -32.65662 -31.65490 -30.93825 -29.19669 -26.83891 -24.99250 -23.67114 -22.70416 -21.91036 -19.74576 -19.34958 -17.95201 -17.15112 -16.44974 -16.14290 -15.72689 -15.43253 -15.20906 -14.81923 -14.72984 -14.21404 -14.03878 -13.84448 -13.62157 -13.18650 -12.66502 -12.52816 -12.35485 -12.07602 -11.95888 -11.82733 -11.75291 -11.62018 -11.26059 -10.79940 -9.84196 -9.56243 -9.32443 -9.16128 -8.28845 -6.27830 0.93231 1.04266 1.52506 1.66485 1.80860 1.89350 2.36508 2.64911 2.77271 3.67564 3.71107 3.91503 3.96505 4.12770 4.27685 4.47431 4.53783 4.58343 4.66145 4.78680 4.83105 4.92087 5.02098 5.08579 5.12147 5.14339 5.30383 5.34050 5.54542 5.70103 5.82598 5.87877 6.10569 6.26349 6.38637 6.62148 6.77497 7.01508 7.14390 7.84017 8.12942 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.007462 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.444518 B = 3751.447161 C = 4688.090512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.007 3.993 3 Si 1.112 2.888 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.052 3.948 10 C -0.225 4.225 11 C -0.110 4.110 12 C -0.237 4.237 13 C -0.077 4.077 14 C 0.044 3.956 15 N -0.646 5.646 16 C 0.396 3.604 17 N -0.660 5.660 18 C 0.078 3.922 19 C -0.147 4.147 20 C -0.109 4.109 21 C -0.119 4.119 22 H 0.282 0.718 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.408 0.592 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 -7.705 -5.407 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.209 4.209 3 Si 0.930 3.070 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.091 0.909 9 C 0.048 3.952 10 C -0.246 4.246 11 C -0.129 4.129 12 C -0.256 4.256 13 C -0.098 4.098 14 C -0.051 4.051 15 N -0.275 5.275 16 C 0.118 3.882 17 N -0.386 5.386 18 C -0.052 4.052 19 C -0.186 4.186 20 C -0.147 4.147 21 C -0.161 4.161 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.126 0.874 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.244 0.756 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.953 -6.329 -4.492 11.848 hybrid contribution 0.271 -1.536 -0.497 1.637 sum 9.224 -7.865 -4.990 13.109 Atomic orbital electron populations 1.70565 1.08993 1.33060 1.31858 1.28227 0.95614 1.07109 0.89939 0.83064 0.74781 0.70304 0.78859 1.19954 1.19781 1.17787 1.20371 1.03632 0.95104 1.38922 0.90908 1.17873 0.93444 0.92436 0.91464 1.20671 1.05016 0.97034 1.01836 1.20560 0.99642 0.92977 0.99754 1.20573 1.04390 0.96225 1.04446 1.20647 0.94799 0.96965 0.97377 1.17727 0.97543 0.92891 0.96972 1.41488 1.31681 1.27786 1.26548 1.21196 0.87992 0.87603 0.91455 1.69607 1.31644 1.12040 1.25352 1.21671 0.94300 0.91838 0.97372 1.22125 1.01160 0.98362 0.96954 1.21597 0.96135 0.95173 1.01800 1.21261 0.96369 1.02810 0.95626 0.90649 0.89662 0.87396 0.86950 0.87000 0.75568 0.92280 0.91266 0.89058 0.91848 0.92192 0.88134 0.88146 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.65 12.35 21.83 0.27 -44.38 16 2 C 0.01 0.36 4.89 85.25 0.42 0.78 16 3 Si 1.11 43.39 30.01 68.60 2.06 45.45 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 7 C -0.55 -29.15 8.31 23.37 0.19 -28.96 16 8 H 0.07 3.70 7.48 -2.91 -0.02 3.68 16 9 C 0.05 2.83 5.27 -21.18 -0.11 2.72 16 10 C -0.23 -12.16 7.97 22.46 0.18 -11.98 16 11 C -0.11 -5.37 9.97 22.01 0.22 -5.15 16 12 C -0.24 -11.04 10.04 22.41 0.22 -10.82 16 13 C -0.08 -3.66 8.51 22.37 0.19 -3.47 16 14 C 0.04 2.20 6.22 38.93 0.24 2.44 16 15 N -0.65 -26.73 4.94 -179.19 -0.89 -27.61 16 16 C 0.40 14.05 7.25 138.07 1.00 15.05 16 17 N -0.66 -25.15 7.14 -340.77 -2.43 -27.59 16 18 C 0.08 2.29 7.19 86.52 0.62 2.91 16 19 C -0.15 -3.12 6.05 30.74 0.19 -2.94 16 20 C -0.11 -2.17 6.08 30.84 0.19 -1.98 16 21 C -0.12 -2.88 5.94 29.76 0.18 -2.70 16 22 H 0.28 16.03 6.90 -92.71 -0.64 15.39 16 23 H 0.09 4.80 6.63 -2.91 -0.02 4.78 16 24 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 25 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 26 H 0.11 5.13 6.48 -2.91 -0.02 5.11 16 27 H 0.41 15.74 8.00 -92.70 -0.74 15.00 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -62.81 286.15 3.22 -59.59 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: 0.48 Total: 38.64 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.73 Total: -44.09 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -3.05 Total: -99.58 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.06 Total: 45.45 kcal Total: -62.81 3.22 -59.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.781 kcal (2) G-P(sol) polarization free energy of solvation -62.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds