Wall clock time and date at job start Mon Mar 30 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48505 * 109.47179 * 270.00410 * 3 2 1 5 5 H 1.48506 * 109.46975 * 30.00086 * 3 2 1 6 6 H 1.48501 * 109.47070 * 150.00059 * 3 2 1 7 7 C 1.37882 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00204 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.27398 * 58.12815 * 9 7 2 11 11 N 1.47909 * 110.19438 * 296.26180 * 9 7 2 12 12 C 1.40537 * 119.07985 * 207.01092 * 11 9 7 13 13 C 1.38619 * 119.48694 * 182.32706 * 12 11 9 14 14 C 1.38211 * 120.21148 * 182.02896 * 13 12 11 15 15 C 1.38259 * 120.15497 * 359.90760 * 14 13 12 16 16 C 1.38222 * 120.15708 * 359.61388 * 15 14 13 17 17 C 1.38630 * 120.21426 * 0.09485 * 16 15 14 18 18 N 1.37911 * 121.33501 * 180.82024 * 17 16 15 19 19 C 1.46662 * 118.95265 * 334.26026 * 18 17 16 20 20 C 1.55323 * 103.38572 * 193.94108 * 19 18 17 21 21 C 1.55077 * 104.92866 * 23.76393 * 20 19 18 22 22 C 1.48570 * 110.81332 * 213.90533 * 18 17 16 23 23 H 1.09003 * 110.47405 * 55.23827 * 22 18 17 24 24 H 0.96993 * 120.00261 * 359.97438 * 1 2 3 25 25 H 0.97002 * 120.46221 * 26.98368 * 11 9 7 26 26 H 1.08003 * 119.89253 * 1.96053 * 13 12 11 27 27 H 1.07993 * 119.92592 * 179.97438 * 14 13 12 28 28 H 1.07996 * 119.92458 * 179.63685 * 15 14 13 29 29 H 1.07993 * 119.89192 * 180.02562 * 16 15 14 30 30 H 1.09002 * 110.63857 * 75.46945 * 19 18 17 31 31 H 1.08997 * 110.78158 * 312.48737 * 19 18 17 32 32 H 1.08993 * 110.35152 * 264.90109 * 20 19 18 33 33 H 1.09003 * 110.34349 * 142.61925 * 20 19 18 34 34 H 1.09004 * 110.50140 * 244.14265 * 21 20 19 35 35 H 1.08994 * 110.61875 * 121.52023 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8895 -0.6543 0.8672 11 7 4.0216 -0.5795 -1.2461 12 6 5.2842 -0.9631 -1.7296 13 6 5.7914 -0.3574 -2.8686 14 6 7.0127 -0.7525 -3.3812 15 6 7.7361 -1.7531 -2.7591 16 6 7.2451 -2.3576 -1.6171 17 6 6.0242 -1.9657 -1.0902 18 7 5.5203 -2.5413 0.0573 19 6 5.9387 -3.9015 0.4119 20 6 4.9184 -4.3176 1.5066 21 6 3.6740 -3.4280 1.2518 22 6 4.0382 -2.6259 -0.0015 23 1 3.7220 -3.1581 -0.8987 24 1 -0.4850 0.8400 0.0004 25 1 3.4919 0.0788 -1.7224 26 1 5.2300 0.4249 -3.3577 27 1 7.4033 -0.2778 -4.2690 28 1 8.6872 -2.0629 -3.1661 29 1 7.8139 -3.1384 -1.1344 30 1 6.9524 -3.8996 0.8125 31 1 5.8690 -4.5647 -0.4503 32 1 5.3264 -4.1234 2.4985 33 1 4.6590 -5.3712 1.4020 34 1 3.5028 -2.7602 2.0961 35 1 2.7933 -4.0434 1.0685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260505125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:40 Heat of formation + Delta-G solvation = 42.889112 kcal Electronic energy + Delta-G solvation = -17979.650401 eV Core-core repulsion = 15363.141823 eV Total energy + Delta-G solvation = -2616.508579 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.31714 -37.32678 -35.16704 -32.68998 -32.06761 -30.16513 -28.56898 -27.56882 -25.88475 -22.69604 -22.32356 -21.59611 -19.96708 -18.81037 -17.35539 -16.88171 -16.07863 -15.31020 -14.80833 -14.35913 -14.14588 -13.99380 -13.39652 -13.28031 -12.75511 -12.44652 -12.23265 -12.08659 -11.89573 -11.38180 -11.03479 -10.91568 -10.69971 -10.58342 -10.43087 -10.04971 -9.94003 -9.75524 -9.34765 -9.06099 -8.86947 -7.55017 -6.35740 -6.26199 -4.41642 1.95336 2.19727 3.11903 3.24014 3.33578 4.13211 4.19293 4.32724 4.57777 4.97116 5.09806 5.13943 5.36586 5.43026 5.51097 5.67815 5.76347 5.85319 5.90250 5.95525 6.12407 6.19602 6.25113 6.31229 6.38637 6.50796 6.64971 6.76075 6.77030 7.04979 7.12694 7.28287 7.34556 7.52157 7.94012 8.19735 8.24209 8.67041 8.73262 9.24813 10.76294 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.010848 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.120177 B = 2580.563200 C = 3699.032021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.081 3.919 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.520 4.520 8 H 0.085 0.915 9 C 0.249 3.751 10 H 0.046 0.954 11 N -0.740 5.740 12 C 0.196 3.804 13 C -0.195 4.195 14 C -0.104 4.104 15 C -0.171 4.171 16 C -0.126 4.126 17 C 0.057 3.943 18 N -0.494 5.494 19 C 0.056 3.944 20 C -0.124 4.124 21 C -0.103 4.103 22 C 0.078 3.922 23 H 0.055 0.945 24 H 0.269 0.731 25 H 0.388 0.612 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.041 -4.910 -1.217 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.558 4.558 8 H 0.103 0.897 9 C 0.148 3.852 10 H 0.063 0.937 11 N -0.371 5.371 12 C 0.088 3.912 13 C -0.219 4.219 14 C -0.124 4.124 15 C -0.192 4.192 16 C -0.149 4.149 17 C -0.046 4.046 18 N -0.208 5.208 19 C -0.071 4.071 20 C -0.162 4.162 21 C -0.141 4.141 22 C -0.029 4.029 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.225 0.775 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.910 -4.612 -0.569 11.858 hybrid contribution 0.035 0.850 -0.900 1.238 sum 10.945 -3.762 -1.468 11.666 Atomic orbital electron populations 1.69875 1.06292 1.27602 1.47964 1.25045 0.94796 0.99230 0.93433 0.86935 0.80835 0.83315 0.78843 1.20247 1.21370 1.18114 1.21055 0.87805 0.95152 1.51829 0.89727 1.19472 0.94404 0.87783 0.83500 0.93685 1.47131 1.14725 1.46342 1.28881 1.18125 0.87012 0.93477 0.92631 1.20407 0.98548 1.04373 0.98597 1.20603 0.94616 0.97746 0.99411 1.20475 1.00590 1.00353 0.97776 1.20462 0.95653 1.01506 0.97241 1.17982 0.96160 0.98729 0.91713 1.59236 1.08139 1.21345 1.32128 1.22677 0.99222 0.87490 0.97689 1.22642 0.95789 0.99190 0.98574 1.21986 0.96451 0.97635 0.98054 1.22545 0.84151 0.98358 0.97812 0.92651 0.92099 0.77525 0.86973 0.87220 0.87321 0.87071 0.90601 0.93852 0.91183 0.91538 0.90313 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.24 13.96 55.43 0.77 -24.47 16 2 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 3 Si 0.87 20.71 25.23 -169.99 -4.29 16.42 16 4 H -0.28 -6.34 7.04 56.52 0.40 -5.94 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.14 6.49 56.52 0.37 -5.77 16 7 C -0.52 -13.62 8.98 -34.44 -0.31 -13.93 16 8 H 0.08 2.37 7.96 -52.48 -0.42 1.96 16 9 C 0.25 5.81 2.04 -68.53 -0.14 5.67 16 10 H 0.05 1.13 7.10 -51.93 -0.37 0.76 16 11 N -0.74 -16.71 4.88 -52.12 -0.25 -16.97 16 12 C 0.20 4.07 6.48 -83.04 -0.54 3.54 16 13 C -0.19 -3.59 9.86 -39.45 -0.39 -3.98 16 14 C -0.10 -1.67 10.04 -39.58 -0.40 -2.07 16 15 C -0.17 -2.67 10.04 -39.58 -0.40 -3.07 16 16 C -0.13 -2.13 9.35 -39.44 -0.37 -2.50 16 17 C 0.06 1.11 5.94 -84.30 -0.50 0.61 16 18 N -0.49 -9.37 4.57 -161.45 -0.74 -10.11 16 19 C 0.06 0.84 5.60 -2.72 -0.02 0.82 16 20 C -0.12 -1.73 7.06 -24.40 -0.17 -1.90 16 21 C -0.10 -1.79 6.24 -25.53 -0.16 -1.95 16 22 C 0.08 1.58 2.01 -66.91 -0.13 1.45 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.39 8.84 6.26 -40.82 -0.26 8.58 16 26 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.11 1.64 7.15 -52.49 -0.38 1.26 16 30 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.43 8.00 -51.93 -0.42 1.01 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 275.98 15.07 4.16 4.16 Total: -1.00 -28.31 275.98 -8.77 -37.08 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.80 Total: 9.10 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.62 Total: -15.22 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.22 Total: -51.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.29 Total: 16.42 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.31 -8.77 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.973 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds