Wall clock time and date at job start Mon Mar 30 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00052 * 2 1 4 4 H 1.48495 * 109.47218 * 265.05536 * 3 2 1 5 5 H 1.48495 * 109.46915 * 25.06017 * 3 2 1 6 6 H 1.48503 * 109.46792 * 145.05388 * 3 2 1 7 7 C 1.37879 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99969 * 1.64776 * 7 2 1 9 9 C 1.50708 * 119.99750 * 181.65054 * 7 2 1 10 10 H 1.08997 * 110.25201 * 332.88375 * 9 7 2 11 11 N 1.47866 * 110.17816 * 94.70951 * 9 7 2 12 12 C 1.40516 * 119.12675 * 84.96859 * 11 9 7 13 13 C 1.38579 * 119.56294 * 182.98701 * 12 11 9 14 14 C 1.38225 * 120.22877 * 180.87159 * 13 12 11 15 15 C 1.38252 * 120.11676 * 0.03392 * 14 13 12 16 16 C 1.38108 * 120.16514 * 359.03829 * 15 14 13 17 17 C 1.38670 * 120.28322 * 0.86510 * 16 15 14 18 18 N 1.37702 * 121.39097 * 180.02562 * 17 16 15 19 19 C 1.45850 * 119.88817 * 337.11520 * 18 17 16 20 20 C 1.54946 * 105.76447 * 203.34187 * 19 18 17 21 21 C 1.55413 * 104.96654 * 3.57918 * 20 19 18 22 22 C 1.48446 * 111.48730 * 212.67227 * 18 17 16 23 23 H 1.09003 * 111.31215 * 56.63295 * 22 18 17 24 24 H 0.97003 * 120.00140 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.43607 * 264.69991 * 11 9 7 26 26 H 1.07999 * 119.88861 * 0.89944 * 13 12 11 27 27 H 1.08001 * 119.93920 * 180.02562 * 14 13 12 28 28 H 1.07998 * 119.91149 * 179.59583 * 15 14 13 29 29 H 1.07999 * 119.84216 * 180.02562 * 16 15 14 30 30 H 1.08995 * 110.18927 * 322.41691 * 19 18 17 31 31 H 1.09001 * 110.18985 * 84.26800 * 19 18 17 32 32 H 1.09004 * 110.34001 * 122.45118 * 20 19 18 33 33 H 1.08997 * 110.34111 * 244.70873 * 20 19 18 34 34 H 1.08999 * 110.90980 * 264.08269 * 21 20 19 35 35 H 1.08996 * 110.91299 * 140.46753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6011 1.9861 -1.3948 5 1 1.3983 2.6805 0.5930 6 1 3.4905 1.4726 0.8020 7 6 2.0044 -1.1941 -0.0005 8 1 1.4648 -2.1291 -0.0278 9 6 3.5110 -1.1943 0.0371 10 1 3.8997 -0.2774 -0.4059 11 7 3.9865 -1.3289 1.4307 12 6 4.1072 -2.6117 1.9913 13 6 4.4921 -2.7456 3.3159 14 6 4.6326 -4.0013 3.8762 15 6 4.3902 -5.1309 3.1168 16 6 3.9876 -5.0095 1.8013 17 6 3.8409 -3.7555 1.2278 18 7 3.4403 -3.6080 -0.0814 19 6 3.6361 -4.6995 -1.0287 20 6 3.6598 -4.0406 -2.4310 21 6 3.5563 -2.5140 -2.1589 22 6 4.0567 -2.4113 -0.7071 23 1 5.1446 -2.4506 -0.6504 24 1 -0.4850 0.8401 0.0004 25 1 4.2157 -0.5422 1.9498 26 1 4.6825 -1.8657 3.9125 27 1 4.9324 -4.1002 4.9091 28 1 4.5073 -6.1105 3.5561 29 1 3.7992 -5.8954 1.2130 30 1 4.5833 -5.2020 -0.8331 31 1 2.8117 -5.4093 -0.9605 32 1 4.5942 -4.2718 -2.9425 33 1 2.8092 -4.3786 -3.0228 34 1 2.5239 -2.1736 -2.2396 35 1 4.2030 -1.9538 -2.8341 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260505148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:45 Heat of formation + Delta-G solvation = 47.225630 kcal Electronic energy + Delta-G solvation = -18105.551809 eV Core-core repulsion = 15489.231276 eV Total energy + Delta-G solvation = -2616.320533 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19733 -37.19404 -34.93665 -32.48883 -31.95754 -30.01800 -28.44831 -27.41922 -25.77071 -22.66752 -22.20540 -21.65149 -19.77972 -18.67954 -17.17780 -16.88644 -15.78196 -15.09283 -14.90494 -14.46556 -14.00992 -13.42453 -13.26375 -13.14600 -12.88357 -12.62718 -12.07243 -11.79231 -11.59840 -11.11700 -10.96604 -10.93531 -10.81424 -10.47365 -10.40934 -10.05981 -9.92522 -9.46025 -9.27011 -8.81465 -8.68417 -7.27756 -6.15756 -6.06595 -4.15304 2.14262 2.37658 3.17035 3.23531 3.28125 4.19698 4.30204 4.47516 4.69342 5.04506 5.23487 5.33528 5.41367 5.54260 5.64517 5.75303 5.89360 5.91655 6.03211 6.08598 6.12436 6.25626 6.30935 6.35432 6.44561 6.60647 6.66678 6.84427 6.94539 7.05251 7.28788 7.49034 7.57152 7.73667 8.12927 8.36936 8.46776 8.77468 9.09079 9.47288 10.96816 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.010668 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.419880 B = 2624.014234 C = 3444.211546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.493 4.493 8 H 0.092 0.908 9 C 0.242 3.758 10 H 0.050 0.950 11 N -0.744 5.744 12 C 0.206 3.794 13 C -0.195 4.195 14 C -0.113 4.113 15 C -0.167 4.167 16 C -0.139 4.139 17 C 0.082 3.918 18 N -0.480 5.480 19 C 0.065 3.935 20 C -0.126 4.126 21 C -0.109 4.109 22 C 0.078 3.922 23 H 0.042 0.958 24 H 0.264 0.736 25 H 0.381 0.619 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 -5.874 -0.793 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.532 4.532 8 H 0.110 0.890 9 C 0.141 3.859 10 H 0.068 0.932 11 N -0.371 5.371 12 C 0.098 3.902 13 C -0.220 4.220 14 C -0.133 4.133 15 C -0.189 4.189 16 C -0.162 4.162 17 C -0.022 4.022 18 N -0.192 5.192 19 C -0.061 4.061 20 C -0.164 4.164 21 C -0.148 4.148 22 C -0.028 4.028 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.214 0.786 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.872 -5.671 -1.081 10.585 hybrid contribution 0.967 1.107 0.445 1.536 sum 9.839 -4.564 -0.635 10.865 Atomic orbital electron populations 1.69900 1.06253 1.26959 1.49344 1.25152 0.94720 0.98773 0.94256 0.86955 0.80052 0.84290 0.78596 1.20071 1.21416 1.19617 1.21271 0.88293 0.95062 1.48536 0.89045 1.19387 0.95547 0.92390 0.78588 0.93212 1.46672 1.71721 1.02805 1.15920 1.17826 0.94975 0.85784 0.91655 1.20303 1.10617 0.97439 0.93622 1.20528 1.02033 0.92152 0.98579 1.20391 1.06555 0.97521 0.94399 1.20391 1.04748 0.94767 0.96278 1.17840 1.02157 0.92322 0.89861 1.57171 1.56919 1.05301 0.99838 1.22338 0.99698 0.92954 0.91149 1.22665 1.01336 0.96637 0.95777 1.22380 1.04144 0.94300 0.93963 1.22723 0.94365 0.91508 0.94248 0.93987 0.92549 0.78571 0.87280 0.87532 0.87598 0.87302 0.94431 0.90787 0.92080 0.91049 0.87976 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.29 26.93 -169.99 -4.58 15.71 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -5.94 6.97 56.52 0.39 -5.55 16 7 C -0.49 -13.11 7.66 -34.44 -0.26 -13.37 16 8 H 0.09 2.78 7.44 -52.49 -0.39 2.39 16 9 C 0.24 5.45 2.63 -68.47 -0.18 5.27 16 10 H 0.05 1.10 5.63 -51.93 -0.29 0.81 16 11 N -0.74 -16.08 5.55 -52.08 -0.29 -16.37 16 12 C 0.21 4.35 6.46 -83.06 -0.54 3.82 16 13 C -0.20 -3.66 9.86 -39.46 -0.39 -4.05 16 14 C -0.11 -1.91 10.04 -39.58 -0.40 -2.31 16 15 C -0.17 -2.83 10.03 -39.62 -0.40 -3.22 16 16 C -0.14 -2.55 9.22 -39.47 -0.36 -2.92 16 17 C 0.08 1.70 6.00 -84.38 -0.51 1.19 16 18 N -0.48 -9.76 3.34 -161.96 -0.54 -10.30 16 19 C 0.06 1.07 5.78 -3.37 -0.02 1.05 16 20 C -0.13 -1.86 6.99 -24.42 -0.17 -2.03 16 21 C -0.11 -1.92 6.51 -24.97 -0.16 -2.08 16 22 C 0.08 1.56 2.55 -66.52 -0.17 1.39 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.38 7.69 8.85 -40.82 -0.36 7.33 16 26 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.11 1.79 7.22 -52.49 -0.38 1.41 16 30 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 2.08 6.98 -51.93 -0.36 1.71 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 277.30 15.07 4.18 4.18 Total: -1.00 -29.52 277.30 -8.83 -38.34 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.72 Total: 9.20 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -3.66 Total: -15.33 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.06 Total: -52.10 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.58 Total: 15.71 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.52 -8.83 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.570 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds