Wall clock time and date at job start Mon Mar 30 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00052 * 2 1 4 4 H 1.48495 * 109.47218 * 265.05536 * 3 2 1 5 5 H 1.48495 * 109.46915 * 25.06017 * 3 2 1 6 6 H 1.48503 * 109.46792 * 145.05388 * 3 2 1 7 7 C 1.37879 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99969 * 1.64776 * 7 2 1 9 9 C 1.50708 * 119.99750 * 181.65054 * 7 2 1 10 10 H 1.08997 * 110.25201 * 332.88375 * 9 7 2 11 11 N 1.47866 * 110.17816 * 94.70951 * 9 7 2 12 12 C 1.40516 * 119.12675 * 84.96859 * 11 9 7 13 13 C 1.38579 * 119.56294 * 182.98701 * 12 11 9 14 14 C 1.38225 * 120.22877 * 180.87159 * 13 12 11 15 15 C 1.38252 * 120.11676 * 0.03392 * 14 13 12 16 16 C 1.38108 * 120.16514 * 359.03829 * 15 14 13 17 17 C 1.38670 * 120.28322 * 0.86510 * 16 15 14 18 18 N 1.37702 * 121.39097 * 180.02562 * 17 16 15 19 19 C 1.45850 * 119.88817 * 337.11520 * 18 17 16 20 20 C 1.54946 * 105.76447 * 203.34187 * 19 18 17 21 21 C 1.55413 * 104.96654 * 3.57918 * 20 19 18 22 22 C 1.48446 * 111.48730 * 212.67227 * 18 17 16 23 23 H 1.09003 * 111.31215 * 56.63295 * 22 18 17 24 24 H 0.97003 * 120.00140 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.43607 * 264.69991 * 11 9 7 26 26 H 1.07999 * 119.88861 * 0.89944 * 13 12 11 27 27 H 1.08001 * 119.93920 * 180.02562 * 14 13 12 28 28 H 1.07998 * 119.91149 * 179.59583 * 15 14 13 29 29 H 1.07999 * 119.84216 * 180.02562 * 16 15 14 30 30 H 1.08995 * 110.18927 * 322.41691 * 19 18 17 31 31 H 1.09001 * 110.18985 * 84.26800 * 19 18 17 32 32 H 1.09004 * 110.34001 * 122.45118 * 20 19 18 33 33 H 1.08997 * 110.34111 * 244.70873 * 20 19 18 34 34 H 1.08999 * 110.90980 * 264.08269 * 21 20 19 35 35 H 1.08996 * 110.91299 * 140.46753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6011 1.9861 -1.3948 5 1 1.3983 2.6805 0.5930 6 1 3.4905 1.4726 0.8020 7 6 2.0044 -1.1941 -0.0005 8 1 1.4648 -2.1291 -0.0278 9 6 3.5110 -1.1943 0.0371 10 1 3.8997 -0.2774 -0.4059 11 7 3.9865 -1.3289 1.4307 12 6 4.1072 -2.6117 1.9913 13 6 4.4921 -2.7456 3.3159 14 6 4.6326 -4.0013 3.8762 15 6 4.3902 -5.1309 3.1168 16 6 3.9876 -5.0095 1.8013 17 6 3.8409 -3.7555 1.2278 18 7 3.4403 -3.6080 -0.0814 19 6 3.6361 -4.6995 -1.0287 20 6 3.6598 -4.0406 -2.4310 21 6 3.5563 -2.5140 -2.1589 22 6 4.0567 -2.4113 -0.7071 23 1 5.1446 -2.4506 -0.6504 24 1 -0.4850 0.8401 0.0004 25 1 4.2157 -0.5422 1.9498 26 1 4.6825 -1.8657 3.9125 27 1 4.9324 -4.1002 4.9091 28 1 4.5073 -6.1105 3.5561 29 1 3.7992 -5.8954 1.2130 30 1 4.5833 -5.2020 -0.8331 31 1 2.8117 -5.4093 -0.9605 32 1 4.5942 -4.2718 -2.9425 33 1 2.8092 -4.3786 -3.0228 34 1 2.5239 -2.1736 -2.2396 35 1 4.2030 -1.9538 -2.8341 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260505148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:45 Heat of formation + Delta-G solvation = 28.380541 kcal Electronic energy + Delta-G solvation = -18106.368993 eV Core-core repulsion = 15489.231276 eV Total energy + Delta-G solvation = -2617.137717 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.66885 -38.59508 -36.55409 -34.40195 -33.41657 -31.59738 -29.87360 -28.86503 -27.59664 -24.21864 -23.70496 -23.13423 -21.11747 -20.36552 -18.95126 -18.36011 -17.41338 -16.67368 -16.45713 -16.08068 -15.41393 -14.93368 -14.78820 -14.65176 -14.55535 -14.30365 -13.46851 -13.23579 -13.04076 -12.88576 -12.66425 -12.46333 -12.14938 -11.89555 -11.86344 -11.77147 -11.34657 -11.26307 -10.77054 -10.76092 -10.38509 -8.76271 -8.24577 -7.61490 -6.28398 0.71766 0.93415 1.33799 1.34422 1.43800 2.33803 2.63144 2.98156 3.25141 3.36394 3.73378 3.87757 4.12490 4.19215 4.28989 4.37366 4.44809 4.59705 4.65927 4.70945 4.72836 4.86372 4.95281 5.01085 5.04304 5.21136 5.29449 5.38235 5.52173 5.55004 5.66850 5.89207 6.15420 6.24487 6.41737 6.61671 6.83840 6.89482 7.18982 7.39681 8.91754 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.010668 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.419880 B = 2624.014234 C = 3444.211546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.295 1.295 6 H -0.249 1.249 7 C -0.481 4.481 8 H 0.039 0.961 9 C 0.243 3.757 10 H 0.057 0.943 11 N -0.753 5.753 12 C 0.168 3.832 13 C -0.198 4.198 14 C -0.115 4.115 15 C -0.159 4.159 16 C -0.148 4.148 17 C 0.056 3.944 18 N -0.506 5.506 19 C 0.062 3.938 20 C -0.115 4.115 21 C -0.110 4.110 22 C 0.079 3.921 23 H 0.052 0.948 24 H 0.263 0.737 25 H 0.386 0.614 26 H 0.122 0.878 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.229 -6.695 -0.417 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.140 3.860 10 H 0.075 0.925 11 N -0.382 5.382 12 C 0.061 3.939 13 C -0.222 4.222 14 C -0.135 4.135 15 C -0.180 4.180 16 C -0.171 4.171 17 C -0.047 4.047 18 N -0.219 5.219 19 C -0.064 4.064 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.028 4.028 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.219 0.781 26 H 0.140 0.860 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.142 0.858 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.522 -6.538 -0.692 13.266 hybrid contribution 0.146 1.166 0.429 1.251 sum 11.669 -5.372 -0.263 12.848 Atomic orbital electron populations 1.70075 1.08350 1.27761 1.52390 1.25985 0.95387 1.02832 0.94235 0.85856 0.79141 0.78938 0.79535 1.18539 1.22213 1.17279 1.21278 0.90597 0.92905 1.47308 0.94245 1.19236 0.92804 0.94217 0.79696 0.92532 1.46214 1.72886 1.03497 1.15604 1.18173 0.97182 0.85579 0.92944 1.20618 1.09673 0.99015 0.92903 1.20946 1.01050 0.91328 1.00167 1.20847 1.04323 0.99171 0.93664 1.20699 1.04593 0.94488 0.97290 1.18219 1.02901 0.93256 0.90370 1.57160 1.57666 1.06583 1.00506 1.22467 1.00461 0.92259 0.91208 1.22658 1.03427 0.94057 0.95173 1.22331 1.02236 0.96874 0.93391 1.22680 0.94664 0.90446 0.95010 0.92999 0.92799 0.78056 0.85962 0.84183 0.84278 0.85769 0.92781 0.90838 0.88816 0.90285 0.91779 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 2 C 0.01 0.77 5.47 84.66 0.46 1.23 16 3 Si 0.94 42.40 26.93 68.60 1.85 44.25 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.25 -10.19 6.97 99.48 0.69 -9.50 16 7 C -0.48 -26.63 7.66 25.60 0.20 -26.43 16 8 H 0.04 2.55 7.44 -2.91 -0.02 2.52 16 9 C 0.24 10.97 2.63 43.89 0.12 11.09 16 10 H 0.06 2.44 5.63 -2.39 -0.01 2.43 16 11 N -0.75 -32.37 5.55 -318.67 -1.77 -34.13 16 12 C 0.17 6.99 6.46 38.28 0.25 7.24 16 13 C -0.20 -7.08 9.86 22.35 0.22 -6.86 16 14 C -0.12 -3.54 10.04 22.27 0.22 -3.32 16 15 C -0.16 -4.86 10.03 22.24 0.22 -4.64 16 16 C -0.15 -5.16 9.22 22.34 0.21 -4.95 16 17 C 0.06 2.30 6.00 38.77 0.23 2.53 16 18 N -0.51 -20.56 3.34 -666.31 -2.22 -22.78 16 19 C 0.06 1.94 5.78 87.17 0.50 2.45 16 20 C -0.12 -3.18 6.99 32.09 0.22 -2.95 16 21 C -0.11 -3.78 6.51 31.73 0.21 -3.57 16 22 C 0.08 3.10 2.55 44.83 0.11 3.22 16 23 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.39 15.32 8.85 -92.71 -0.82 14.50 16 26 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 27 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.12 3.82 7.22 -2.91 -0.02 3.80 16 30 H 0.05 1.52 7.81 -2.39 -0.02 1.50 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.69 6.98 -2.39 -0.02 2.67 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -67.07 277.30 1.59 -65.48 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.26 Total: 30.44 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 3.18 Total: -24.99 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -3.69 Total: -115.17 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.85 Total: 44.25 kcal Total: -67.07 1.59 -65.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.858 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds