Wall clock time and date at job start Mon Mar 30 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36644 * 119.66337 * 2 1 4 4 C 1.39699 * 119.88604 * 180.29440 * 3 2 1 5 5 N 1.35784 * 133.60762 * 179.72657 * 4 3 2 6 6 C 1.30113 * 109.64550 * 179.97438 * 5 4 3 7 7 C 1.50697 * 124.94510 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46869 * 90.02660 * 7 6 5 9 9 H 1.07998 * 120.00221 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99664 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00540 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99665 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47292 * 90.00666 * 12 10 8 14 14 H 1.48507 * 109.47056 * 210.00293 * 12 10 8 15 15 H 1.48496 * 109.46988 * 329.99991 * 12 10 8 16 16 N 1.36035 * 110.10688 * 0.02562 * 6 5 4 17 17 C 1.46502 * 126.35084 * 180.02562 * 16 6 5 18 18 C 1.38063 * 107.30322 * 359.97438 * 16 6 5 19 19 C 1.38788 * 134.14227 * 180.02562 * 18 16 6 20 20 C 1.37896 * 119.68803 * 179.97438 * 19 18 16 21 21 C 1.50703 * 119.77528 * 179.97438 * 20 19 18 22 22 H 1.09006 * 109.47258 * 270.25916 * 1 2 3 23 23 H 1.08999 * 109.47678 * 30.25972 * 1 2 3 24 24 H 1.09004 * 109.46701 * 150.26136 * 1 2 3 25 25 H 1.07999 * 120.05306 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47429 * 210.02340 * 7 6 5 27 27 H 1.08994 * 109.47290 * 330.02814 * 7 6 5 28 28 H 0.96993 * 120.00118 * 180.02562 * 11 10 8 29 29 H 1.09005 * 109.46567 * 269.97672 * 17 16 6 30 30 H 1.09003 * 109.47169 * 29.96722 * 17 16 6 31 31 H 1.08990 * 109.47553 * 149.97103 * 17 16 6 32 32 H 1.08004 * 120.15833 * 0.02562 * 19 18 16 33 33 H 1.09002 * 109.47152 * 90.00258 * 21 20 19 34 34 H 1.09001 * 109.46980 * 330.00359 * 21 20 19 35 35 H 1.09004 * 109.47113 * 210.00339 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.1874 0.0000 4 6 3.5802 1.1928 -0.0062 5 7 4.5129 2.1796 -0.0126 6 6 5.7039 1.6558 -0.0162 7 6 6.9913 2.4391 -0.0240 8 6 7.4269 2.7038 1.3942 9 1 6.8313 2.3407 2.2187 10 6 8.5863 3.4085 1.6391 11 7 9.3120 3.8502 0.6351 12 14 9.1259 3.7372 3.3971 13 1 9.9960 2.6280 3.8635 14 1 9.8805 5.0151 3.4526 15 1 7.9301 3.8301 4.2726 16 7 5.6178 0.2982 -0.0129 17 6 6.7403 -0.6431 -0.0148 18 6 4.2763 -0.0281 -0.0064 19 6 3.5725 -1.2243 -0.0003 20 6 2.1937 -1.2054 0.0061 21 6 1.4275 -2.5031 0.0121 22 1 -0.3634 0.0046 1.0277 23 1 -0.3634 0.8876 -0.5178 24 1 -0.3633 -0.8924 -0.5098 25 1 1.6386 2.1200 -0.0004 26 1 7.7620 1.8663 -0.5398 27 1 6.8368 3.3869 -0.5395 28 1 10.1278 4.3456 0.8074 29 1 7.0148 -0.8791 -1.0430 30 1 7.5926 -0.1933 0.4946 31 1 6.4489 -1.5572 0.5024 32 1 4.1022 -2.1655 0.0002 33 1 1.2475 -2.8141 1.0412 34 1 2.0068 -3.2695 -0.5030 35 1 0.4740 -2.3645 -0.4977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260689435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:52 Heat of formation + Delta-G solvation = 52.136034 kcal Electronic energy + Delta-G solvation = -16966.744848 eV Core-core repulsion = 14350.637246 eV Total energy + Delta-G solvation = -2616.107602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.51531 -37.93711 -33.71835 -33.44736 -31.76102 -31.33328 -29.03165 -27.41699 -25.88361 -25.22947 -23.26329 -21.30502 -20.44932 -19.13603 -16.61603 -16.38248 -16.15352 -15.10941 -14.96858 -14.61654 -13.96609 -13.76864 -13.51903 -12.76581 -12.70308 -12.61305 -12.36738 -12.29629 -11.98551 -11.90751 -11.54323 -11.16798 -10.96932 -10.90195 -10.75442 -10.46371 -10.00514 -9.76453 -9.47251 -9.17073 -8.56242 -7.62628 -7.39281 -6.17988 -4.23100 1.44618 1.90984 3.23842 3.26858 3.31353 3.36321 3.50001 4.27953 4.38730 4.78429 4.99502 5.11820 5.16603 5.19338 5.30103 5.45831 5.56054 5.58453 5.60675 5.73450 5.77655 5.87964 5.92441 5.93784 6.04322 6.19783 6.32027 6.49523 6.88527 6.94079 7.06970 7.17422 7.30412 7.48068 7.76588 7.82360 8.11081 8.75921 8.79417 9.41547 10.91734 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037058 B = 0.005380 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.399122 B = 5202.964957 C = 5413.808675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.103 4.103 3 C -0.071 4.071 4 C 0.055 3.945 5 N -0.516 5.516 6 C 0.340 3.660 7 C 0.086 3.914 8 C -0.516 4.516 9 H 0.058 0.942 10 C 0.064 3.936 11 N -0.890 5.890 12 Si 0.901 3.099 13 H -0.279 1.279 14 H -0.283 1.283 15 H -0.272 1.272 16 N -0.496 5.496 17 C 0.083 3.917 18 C 0.030 3.970 19 C -0.104 4.104 20 C -0.092 4.092 21 C -0.107 4.107 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.122 0.878 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.156 -11.863 -1.925 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.091 4.091 4 C -0.064 4.064 5 N -0.236 5.236 6 C 0.077 3.923 7 C 0.048 3.952 8 C -0.555 4.555 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.528 5.528 12 Si 0.728 3.272 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.197 1.197 16 N -0.186 5.186 17 C -0.060 4.060 18 C -0.079 4.079 19 C -0.125 4.125 20 C -0.094 4.094 21 C -0.163 4.163 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.140 0.860 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.071 -10.995 -1.982 15.728 hybrid contribution 0.744 -0.642 0.976 1.385 sum -10.327 -11.636 -1.006 15.591 Atomic orbital electron populations 1.20755 0.91475 1.02292 1.01855 1.19044 0.95528 0.92028 1.03990 1.19737 0.90352 0.97647 1.01358 1.19224 0.94065 0.88925 1.04175 1.70601 0.97541 1.29942 1.25467 1.25018 0.97275 0.79130 0.90918 1.18082 0.83352 0.94539 0.99259 1.20858 1.07685 1.36322 0.90658 0.92368 1.24944 0.96169 0.95093 0.97648 1.69933 1.15250 1.36912 1.30722 0.86444 0.78737 0.77812 0.84222 1.20528 1.20896 1.19696 1.45348 1.04463 1.07745 1.61022 1.21900 0.89003 0.92423 1.02667 1.18882 0.84437 0.96777 1.07820 1.19628 0.92912 0.94398 1.05587 1.19232 0.92281 0.94690 1.03166 1.20744 0.99702 0.94037 1.01845 0.91721 0.91956 0.91569 0.85984 0.94119 0.92372 0.92492 0.91568 0.88094 0.90909 0.86836 0.91675 0.92173 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.57 36.01 0.34 -0.81 16 2 C -0.10 -1.53 5.84 -105.02 -0.61 -2.14 16 3 C -0.07 -1.27 9.67 -39.61 -0.38 -1.65 16 4 C 0.06 1.19 7.23 -84.70 -0.61 0.58 16 5 N -0.52 -12.63 11.27 -8.24 -0.09 -12.72 16 6 C 0.34 8.08 7.04 -154.82 -1.09 6.99 16 7 C 0.09 2.20 5.04 -29.03 -0.15 2.06 16 8 C -0.52 -14.19 9.09 -34.44 -0.31 -14.50 16 9 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 12 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 N -0.50 -10.09 3.21 -118.51 -0.38 -10.47 16 17 C 0.08 1.30 10.76 59.85 0.64 1.94 16 18 C 0.03 0.59 6.87 -83.99 -0.58 0.01 16 19 C -0.10 -1.67 9.69 -39.50 -0.38 -2.06 16 20 C -0.09 -1.31 5.88 -104.56 -0.62 -1.93 16 21 C -0.11 -1.09 9.59 36.01 0.35 -0.74 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.62 8.08 -51.93 -0.42 0.21 16 24 H 0.07 0.60 5.90 -51.93 -0.31 0.29 16 25 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 26 H 0.04 1.02 7.65 -51.93 -0.40 0.62 16 27 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.69 7.62 -51.93 -0.40 1.29 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.07 0.60 5.89 -51.93 -0.31 0.29 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -31.25 296.46 -8.53 -39.78 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.74 Total: -2.07 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -3.50 Total: -10.60 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.26 Total: -47.66 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.25 -8.53 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260689435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.920 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds