Wall clock time and date at job start Mon Mar 30 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36644 * 119.66337 * 2 1 4 4 C 1.39699 * 119.88604 * 180.29440 * 3 2 1 5 5 N 1.35784 * 133.60762 * 179.72657 * 4 3 2 6 6 C 1.30113 * 109.64550 * 179.97438 * 5 4 3 7 7 C 1.50697 * 124.94510 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46869 * 90.02660 * 7 6 5 9 9 H 1.07998 * 120.00221 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99664 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00540 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99665 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47292 * 90.00666 * 12 10 8 14 14 H 1.48507 * 109.47056 * 210.00293 * 12 10 8 15 15 H 1.48496 * 109.46988 * 329.99991 * 12 10 8 16 16 N 1.36035 * 110.10688 * 0.02562 * 6 5 4 17 17 C 1.46502 * 126.35084 * 180.02562 * 16 6 5 18 18 C 1.38063 * 107.30322 * 359.97438 * 16 6 5 19 19 C 1.38788 * 134.14227 * 180.02562 * 18 16 6 20 20 C 1.37896 * 119.68803 * 179.97438 * 19 18 16 21 21 C 1.50703 * 119.77528 * 179.97438 * 20 19 18 22 22 H 1.09006 * 109.47258 * 270.25916 * 1 2 3 23 23 H 1.08999 * 109.47678 * 30.25972 * 1 2 3 24 24 H 1.09004 * 109.46701 * 150.26136 * 1 2 3 25 25 H 1.07999 * 120.05306 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47429 * 210.02340 * 7 6 5 27 27 H 1.08994 * 109.47290 * 330.02814 * 7 6 5 28 28 H 0.96993 * 120.00118 * 180.02562 * 11 10 8 29 29 H 1.09005 * 109.46567 * 269.97672 * 17 16 6 30 30 H 1.09003 * 109.47169 * 29.96722 * 17 16 6 31 31 H 1.08990 * 109.47553 * 149.97103 * 17 16 6 32 32 H 1.08004 * 120.15833 * 0.02562 * 19 18 16 33 33 H 1.09002 * 109.47152 * 90.00258 * 21 20 19 34 34 H 1.09001 * 109.46980 * 330.00359 * 21 20 19 35 35 H 1.09004 * 109.47113 * 210.00339 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.1874 0.0000 4 6 3.5802 1.1928 -0.0062 5 7 4.5129 2.1796 -0.0126 6 6 5.7039 1.6558 -0.0162 7 6 6.9913 2.4391 -0.0240 8 6 7.4269 2.7038 1.3942 9 1 6.8313 2.3407 2.2187 10 6 8.5863 3.4085 1.6391 11 7 9.3120 3.8502 0.6351 12 14 9.1259 3.7372 3.3971 13 1 9.9960 2.6280 3.8635 14 1 9.8805 5.0151 3.4526 15 1 7.9301 3.8301 4.2726 16 7 5.6178 0.2982 -0.0129 17 6 6.7403 -0.6431 -0.0148 18 6 4.2763 -0.0281 -0.0064 19 6 3.5725 -1.2243 -0.0003 20 6 2.1937 -1.2054 0.0061 21 6 1.4275 -2.5031 0.0121 22 1 -0.3634 0.0046 1.0277 23 1 -0.3634 0.8876 -0.5178 24 1 -0.3633 -0.8924 -0.5098 25 1 1.6386 2.1200 -0.0004 26 1 7.7620 1.8663 -0.5398 27 1 6.8368 3.3869 -0.5395 28 1 10.1278 4.3456 0.8074 29 1 7.0148 -0.8791 -1.0430 30 1 7.5926 -0.1933 0.4946 31 1 6.4489 -1.5572 0.5024 32 1 4.1022 -2.1655 0.0002 33 1 1.2475 -2.8141 1.0412 34 1 2.0068 -3.2695 -0.5030 35 1 0.4740 -2.3645 -0.4977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260689435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:52 Heat of formation + Delta-G solvation = 34.471096 kcal Electronic energy + Delta-G solvation = -16967.510857 eV Core-core repulsion = 14350.637246 eV Total energy + Delta-G solvation = -2616.873611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.02122 -39.20017 -35.49011 -35.16684 -33.17559 -32.57495 -30.78252 -28.60135 -27.14488 -26.79234 -24.95970 -22.66265 -21.81403 -20.75373 -18.68701 -17.83458 -17.51340 -16.66442 -16.60145 -16.09365 -15.07673 -14.94538 -14.79441 -14.44544 -14.23246 -13.84017 -13.71417 -13.48783 -13.36609 -13.27871 -12.86913 -12.77168 -12.64500 -12.18082 -12.09493 -12.02548 -11.93379 -11.35044 -11.19467 -10.78542 -10.67637 -8.98524 -8.85792 -8.27659 -6.42572 0.06516 0.60009 1.37590 1.40221 1.51178 1.81693 1.91401 2.38229 2.90390 3.03277 3.39933 3.71890 3.91675 4.01225 4.14468 4.37457 4.38227 4.41353 4.53179 4.62667 4.73054 4.83783 4.85814 4.96260 5.02435 5.07431 5.13145 5.20613 5.27518 5.36055 5.60703 5.62980 5.73070 5.76407 5.94885 6.10816 6.34044 6.63339 7.12704 7.26208 8.81115 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037058 B = 0.005380 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.399122 B = 5202.964957 C = 5413.808675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 C -0.092 4.092 4 C 0.006 3.994 5 N -0.554 5.554 6 C 0.308 3.692 7 C 0.102 3.898 8 C -0.532 4.532 9 H 0.044 0.956 10 C 0.019 3.981 11 N -0.919 5.919 12 Si 0.968 3.032 13 H -0.263 1.263 14 H -0.275 1.275 15 H -0.276 1.276 16 N -0.494 5.494 17 C 0.077 3.923 18 C 0.018 3.982 19 C -0.111 4.111 20 C -0.078 4.078 21 C -0.105 4.105 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.124 0.876 26 H 0.038 0.962 27 H 0.024 0.976 28 H 0.271 0.729 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.962 -14.793 -1.140 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.112 4.112 4 C -0.112 4.112 5 N -0.275 5.275 6 C 0.043 3.957 7 C 0.063 3.937 8 C -0.571 4.571 9 H 0.062 0.938 10 C -0.181 4.181 11 N -0.558 5.558 12 Si 0.792 3.208 13 H -0.188 1.188 14 H -0.200 1.200 15 H -0.201 1.201 16 N -0.184 5.184 17 C -0.064 4.064 18 C -0.091 4.091 19 C -0.132 4.132 20 C -0.080 4.080 21 C -0.161 4.161 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.876 -13.955 -1.206 19.026 hybrid contribution 1.115 0.173 0.686 1.321 sum -11.761 -13.782 -0.520 18.125 Atomic orbital electron populations 1.20863 0.88120 1.03973 1.03265 1.19588 0.97873 0.91082 1.01156 1.20020 0.89212 0.99357 1.02571 1.19709 0.95318 0.89173 1.06986 1.70405 0.98683 1.32307 1.26056 1.24375 0.96310 0.80887 0.94157 1.17675 0.84635 0.93345 0.98056 1.20998 1.08024 1.36939 0.91135 0.93762 1.25766 0.95941 0.94489 1.01892 1.70028 1.15676 1.37268 1.32806 0.85412 0.78198 0.78319 0.78906 1.18815 1.20035 1.20145 1.45412 1.05881 1.06907 1.60166 1.22155 0.87399 0.92511 1.04305 1.19299 0.83878 0.97604 1.08336 1.20074 0.93769 0.94105 1.05215 1.19877 0.91987 0.96533 0.99622 1.20869 1.00172 0.91678 1.03429 0.90240 0.91400 0.88896 0.85821 0.94425 0.95770 0.92016 0.89505 0.89802 0.87591 0.83791 0.90003 0.90551 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.57 71.24 0.68 -1.18 16 2 C -0.09 -2.56 5.84 -20.12 -0.12 -2.68 16 3 C -0.09 -3.29 9.67 22.25 0.22 -3.07 16 4 C 0.01 0.28 7.23 39.45 0.29 0.57 16 5 N -0.55 -28.86 11.27 -179.97 -2.03 -30.89 16 6 C 0.31 15.51 7.04 137.92 0.97 16.48 16 7 C 0.10 5.56 5.04 29.10 0.15 5.71 16 8 C -0.53 -30.66 9.09 25.60 0.23 -30.42 16 9 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 10 C 0.02 1.07 5.46 84.65 0.46 1.54 16 11 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 12 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 13 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 N -0.49 -20.60 3.21 -528.84 -1.70 -22.30 16 17 C 0.08 2.41 10.76 127.77 1.37 3.78 16 18 C 0.02 0.70 6.87 38.85 0.27 0.96 16 19 C -0.11 -3.27 9.69 22.32 0.22 -3.05 16 20 C -0.08 -1.96 5.88 -19.83 -0.12 -2.07 16 21 C -0.11 -1.55 9.59 71.24 0.68 -0.87 16 22 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 24 H 0.09 1.16 5.90 -2.39 -0.01 1.15 16 25 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.04 2.01 7.65 -2.39 -0.02 1.99 16 27 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.09 2.31 8.14 -2.38 -0.02 2.30 16 30 H 0.08 2.89 7.62 -2.39 -0.02 2.87 16 31 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 35 H 0.09 1.00 5.89 -2.38 -0.01 0.98 16 Total: -1.00 -72.06 296.46 4.97 -67.09 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.08 Total: 7.67 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.30 Total: -14.31 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -3.44 Total: -106.37 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.06 4.97 -67.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260689435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.560 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds