Wall clock time and date at job start Mon Mar 30 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46843 * 2 1 4 4 H 1.09008 * 109.46614 * 182.34712 * 3 2 1 5 5 C 1.50697 * 109.47667 * 62.35074 * 3 2 1 6 6 H 1.08008 * 119.99421 * 273.36792 * 5 3 2 7 7 C 1.37877 * 120.00376 * 93.36282 * 5 3 2 8 8 N 1.31516 * 119.99829 * 185.95203 * 7 5 3 9 9 Si 1.86794 * 119.99844 * 5.94810 * 7 5 3 10 10 H 1.48505 * 109.47126 * 86.80958 * 9 7 5 11 11 H 1.48500 * 109.46972 * 206.80963 * 9 7 5 12 12 H 1.48501 * 109.47346 * 326.81283 * 9 7 5 13 13 C 1.53001 * 109.47168 * 302.34297 * 3 2 1 14 14 H 1.08998 * 110.27585 * 56.62053 * 13 3 2 15 15 C 1.53077 * 110.46079 * 294.40739 * 13 3 2 16 16 C 1.44817 * 115.41717 * 146.47792 * 15 13 3 17 17 C 1.55238 * 110.45033 * 64.06383 * 16 15 13 18 18 S 1.79260 * 109.69233 * 286.73628 * 17 16 15 19 19 O 1.42103 * 109.47162 * 207.08580 * 18 17 16 20 20 C 1.82383 * 106.77565 * 88.70338 * 18 17 16 21 21 C 1.51415 * 110.32517 * 178.74324 * 13 3 2 22 22 H 1.08997 * 109.47336 * 65.79132 * 1 2 3 23 23 H 1.09001 * 109.46997 * 185.79080 * 1 2 3 24 24 H 1.09004 * 109.46777 * 305.78882 * 1 2 3 25 25 H 1.08995 * 109.47063 * 239.99755 * 2 1 3 26 26 H 1.09004 * 109.47016 * 119.99587 * 2 1 3 27 27 H 0.97000 * 119.99873 * 180.02562 * 8 7 5 28 28 H 1.08999 * 108.29239 * 268.02284 * 15 13 3 29 29 H 1.09004 * 108.28846 * 25.12834 * 15 13 3 30 30 H 1.09005 * 109.30375 * 184.36409 * 16 15 13 31 31 H 1.09003 * 109.30833 * 303.95755 * 16 15 13 32 32 H 1.08997 * 109.43257 * 46.80630 * 17 16 15 33 33 H 1.09000 * 109.43242 * 166.71400 * 17 16 15 34 34 H 1.08994 * 109.15989 * 198.64198 * 20 18 17 35 35 H 1.08999 * 109.24870 * 79.36895 * 20 18 17 36 36 H 1.08998 * 109.53208 * 344.36289 * 21 13 3 37 37 H 1.09008 * 109.52767 * 104.50659 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1292 1.4428 -0.0421 5 6 1.5858 2.1360 1.2585 6 1 0.6179 2.6141 1.2923 7 6 2.4057 2.1600 2.3667 8 7 1.9650 2.6613 3.4999 9 14 4.1423 1.4805 2.2586 10 1 5.0612 2.5443 1.7796 11 1 4.5773 1.0180 3.6010 12 1 4.1690 0.3390 1.3090 13 6 1.4823 2.1806 -1.2187 14 1 0.3932 2.1366 -1.2212 15 6 2.0417 1.5794 -2.5106 16 6 1.1410 1.5949 -3.6444 17 6 0.8166 3.0552 -4.0594 18 16 -0.2903 3.7930 -2.8579 19 8 -1.0638 4.8063 -3.4859 20 6 0.7578 4.5418 -1.5667 21 6 1.9506 3.6205 -1.2212 22 1 -0.3634 0.4214 -0.9372 23 1 -0.3633 -1.0224 0.1037 24 1 -0.3633 0.6010 0.8337 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.5420 2.6785 4.2795 28 1 2.9428 2.1295 -2.7818 29 1 2.3213 0.5445 -2.3132 30 1 1.6077 1.0772 -4.4825 31 1 0.2154 1.0854 -3.3764 32 1 1.7398 3.6329 -4.1048 33 1 0.3396 3.0562 -5.0395 34 1 0.1597 4.7046 -0.6703 35 1 1.1367 5.4999 -1.9224 36 1 2.3376 3.8796 -0.2357 37 1 2.7363 3.7468 -1.9661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260826000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:13 Heat of formation + Delta-G solvation = -57.542734 kcal Electronic energy + Delta-G solvation = -17013.010369 eV Core-core repulsion = 14495.297939 eV Total energy + Delta-G solvation = -2517.712430 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.44678 -35.33749 -34.31287 -32.26820 -31.84022 -28.55328 -27.18574 -24.67404 -23.28057 -21.31886 -20.84115 -18.57623 -16.95662 -16.70320 -15.67281 -15.35517 -14.59033 -14.06868 -13.81798 -13.65343 -13.27901 -13.14201 -12.83925 -12.69938 -12.37022 -11.96898 -11.62055 -11.28934 -11.11635 -11.01862 -10.72850 -10.69320 -10.56344 -10.01858 -9.95644 -9.69054 -9.59659 -9.52051 -9.15754 -8.78970 -8.48673 -7.73642 -6.06782 -4.03315 1.72380 2.99232 3.27192 3.37425 3.38338 4.06169 4.42420 4.85292 5.03318 5.22457 5.24834 5.38552 5.44782 5.67813 5.79121 5.90560 5.95305 6.07255 6.14371 6.19474 6.29178 6.33547 6.39865 6.56048 6.58420 6.72542 6.77523 6.87431 7.08138 7.11854 7.23786 7.39382 7.48243 7.81523 8.54390 9.00003 9.57520 11.06294 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.008406 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.857647 B = 3330.304501 C = 3594.939345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.021 3.979 4 H 0.030 0.970 5 C -0.498 4.498 6 H 0.077 0.923 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.869 3.131 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.263 1.263 13 C -0.081 4.081 14 H 0.079 0.921 15 C -0.142 4.142 16 C -0.075 4.075 17 C -0.454 4.454 18 S 1.226 4.774 19 O -0.877 6.877 20 C -0.423 4.423 21 C -0.092 4.092 22 H 0.045 0.955 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -4.274 -10.816 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.002 3.998 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.095 0.905 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.697 3.303 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.188 1.188 13 C -0.100 4.100 14 H 0.097 0.903 15 C -0.179 4.179 16 C -0.113 4.113 17 C -0.591 4.591 18 S 1.426 4.574 19 O -0.873 6.873 20 C -0.562 4.562 21 C -0.130 4.130 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.576 -4.194 -10.694 11.595 hybrid contribution 2.492 1.390 -0.799 2.963 sum 0.915 -2.804 -11.493 11.866 Atomic orbital electron populations 1.21730 0.96789 0.99528 1.01921 1.21719 0.95901 0.98995 0.98673 1.19233 0.95595 0.91698 0.93238 0.95163 1.20917 1.04335 1.34065 0.94306 0.90489 1.25032 0.97866 0.94885 0.95344 1.69905 1.36412 1.46539 1.01055 0.86992 0.86085 0.80101 0.77143 1.20554 1.21906 1.18807 1.21227 1.00362 0.94207 0.94220 0.90286 1.20686 0.99186 1.02891 0.95180 1.19965 1.00848 0.92099 0.98434 1.27871 1.12780 1.05688 1.12764 1.70501 0.88417 1.05999 0.92456 1.92997 1.55514 1.62825 1.75921 1.28017 1.09546 1.06340 1.12269 1.21662 0.93952 0.93842 1.03509 0.93646 0.95269 0.91091 0.95042 0.93364 0.92838 0.92733 0.91259 0.91674 0.90774 0.89416 0.88405 0.86135 0.91084 0.88553 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.21 37.16 0.34 -1.98 16 2 C -0.11 -2.08 5.48 -26.73 -0.15 -2.23 16 3 C 0.02 0.42 1.19 -91.77 -0.11 0.31 16 4 H 0.03 0.63 5.30 -51.92 -0.28 0.35 16 5 C -0.50 -12.01 6.21 -34.44 -0.21 -12.22 16 6 H 0.08 2.00 7.95 -52.48 -0.42 1.59 16 7 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -25.79 13.96 55.43 0.77 -25.02 16 9 Si 0.87 20.19 27.07 -169.99 -4.60 15.59 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.26 -5.81 6.72 56.52 0.38 -5.43 16 13 C -0.08 -1.29 1.13 -91.38 -0.10 -1.40 16 14 H 0.08 1.16 4.48 -51.93 -0.23 0.93 16 15 C -0.14 -1.88 4.45 -30.52 -0.14 -2.02 16 16 C -0.07 -0.83 5.48 -29.37 -0.16 -0.99 16 17 C -0.45 -5.62 5.92 38.34 0.23 -5.39 16 18 S 1.23 17.56 11.50 -107.50 -1.24 16.32 16 19 O -0.88 -17.52 18.13 -35.23 -0.64 -18.16 16 20 C -0.42 -6.63 6.59 38.01 0.25 -6.38 16 21 C -0.09 -1.51 5.08 -26.68 -0.14 -1.65 16 22 H 0.04 0.62 6.65 -51.93 -0.35 0.27 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 1.32 7.03 -51.93 -0.37 0.96 16 25 H 0.03 0.49 6.42 -51.93 -0.33 0.16 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 29 H 0.07 0.91 5.93 -51.93 -0.31 0.60 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.09 1.11 7.89 -51.76 -0.41 0.70 16 33 H 0.10 1.17 8.14 -51.75 -0.42 0.75 16 34 H 0.12 1.94 8.14 -51.93 -0.42 1.51 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.10 1.89 6.65 -51.93 -0.35 1.54 16 37 H 0.05 0.73 6.55 -51.92 -0.34 0.39 16 LS Contribution 284.61 15.07 4.29 4.29 Total: -1.00 -31.03 284.61 -7.53 -38.55 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.83 Total: 0.62 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -0.28 Total: -32.20 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.77 Total: -25.02 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.64 Total: -18.16 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.60 Total: 15.59 kcal Atomic # 16 Polarization: 17.56 SS G_CDS: -1.24 Total: 16.32 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.03 -7.53 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260826000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.989 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds