Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47435 * 2 1 4 4 H 1.08996 * 109.47278 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46901 * 59.91774 * 3 2 1 6 6 H 1.08001 * 120.00127 * 240.00304 * 5 3 2 7 7 C 1.37885 * 119.99795 * 60.00365 * 5 3 2 8 8 N 1.31511 * 119.99675 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00022 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47003 * 89.99843 * 9 7 5 11 11 H 1.48496 * 109.46705 * 209.99885 * 9 7 5 12 12 H 1.48500 * 109.47037 * 329.99662 * 9 7 5 13 13 C 1.53006 * 109.46957 * 299.92349 * 3 2 1 14 14 H 1.09003 * 109.49053 * 64.32646 * 13 3 2 15 15 C 1.51588 * 109.47753 * 184.35529 * 13 3 2 16 16 C 1.53182 * 106.87887 * 222.72876 * 15 13 3 17 17 C 1.45384 * 115.33480 * 268.25805 * 16 15 13 18 18 S 1.83634 * 109.69557 * 64.73401 * 17 16 15 19 19 O 1.42102 * 109.47300 * 174.76219 * 18 17 16 20 20 C 1.79973 * 102.84222 * 291.06885 * 18 17 16 21 21 C 1.53044 * 109.62375 * 304.34164 * 13 3 2 22 22 H 1.09000 * 109.47145 * 65.08664 * 1 2 3 23 23 H 1.09004 * 109.47175 * 185.08654 * 1 2 3 24 24 H 1.08996 * 109.47352 * 305.08652 * 1 2 3 25 25 H 1.09001 * 109.47097 * 240.00155 * 2 1 3 26 26 H 1.09003 * 109.47165 * 119.99954 * 2 1 3 27 27 H 0.97007 * 119.99746 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.98819 * 103.35954 * 15 13 3 29 29 H 1.08999 * 109.98717 * 342.09525 * 15 13 3 30 30 H 1.08997 * 108.31130 * 29.78047 * 16 15 13 31 31 H 1.09008 * 108.30785 * 146.92955 * 16 15 13 32 32 H 1.08998 * 109.43080 * 184.79818 * 17 16 15 33 33 H 1.09000 * 109.43659 * 304.66218 * 17 16 15 34 34 H 1.08998 * 108.74872 * 207.64472 * 20 18 17 35 35 H 1.09001 * 108.75244 * 325.87935 * 20 18 17 36 36 H 1.08997 * 108.29456 * 76.66812 * 21 13 3 37 37 H 1.09006 * 108.04425 * 319.72496 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5361 2.1535 1.2295 6 1 0.9153 3.0315 1.1292 7 6 1.8675 1.6829 2.4824 8 7 2.6230 0.6135 2.6045 9 14 1.2422 2.5638 4.0065 10 1 -0.0663 1.9884 4.4089 11 1 2.2189 2.3936 5.1121 12 1 1.0772 4.0095 3.7099 13 6 1.5316 2.1632 -1.2503 14 1 0.4443 2.2311 -1.2141 15 6 2.1236 3.5576 -1.3058 16 6 0.9943 4.5039 -1.7248 17 6 0.8752 4.7354 -3.1552 18 16 0.4219 3.1693 -4.0000 19 8 0.1882 3.4249 -5.3782 20 6 1.9089 2.1719 -3.8186 21 6 1.9503 1.3836 -2.4989 22 1 -0.3633 0.4329 -0.9320 23 1 -0.3634 -1.0236 0.0911 24 1 -0.3634 0.5907 0.8409 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.8559 0.2822 3.4860 28 1 2.9294 3.5914 -2.0391 29 1 2.5020 3.8411 -0.3237 30 1 0.0514 4.0923 -1.3649 31 1 1.1546 5.4655 -1.2371 32 1 0.1034 5.4829 -3.3385 33 1 1.8275 5.0952 -3.5449 34 1 1.9621 1.4679 -4.6491 35 1 2.7782 2.8282 -3.8602 36 1 1.2955 0.5178 -2.5973 37 1 2.9683 1.0244 -2.3472 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260826004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = -62.040829 kcal Electronic energy + Delta-G solvation = -16871.882339 eV Core-core repulsion = 14353.974857 eV Total energy + Delta-G solvation = -2517.907482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.08911 -35.46652 -34.41722 -32.55392 -31.01786 -29.08547 -26.16967 -24.96426 -22.89431 -21.87966 -20.24111 -18.51274 -16.95294 -16.12744 -15.51370 -15.30230 -14.67014 -14.28565 -14.12654 -13.69771 -13.27420 -13.00474 -12.60130 -12.16696 -12.06473 -12.03130 -11.59316 -11.13745 -10.91781 -10.78063 -10.65361 -10.52362 -10.29537 -10.19989 -9.96934 -9.64112 -9.57853 -9.33321 -8.86926 -8.61070 -8.26926 -7.91535 -5.95572 -3.99921 1.70120 2.76357 3.30626 3.38704 3.40443 4.00597 4.44750 4.93094 5.09455 5.33775 5.35398 5.37956 5.51506 5.59618 5.85964 6.02270 6.12277 6.22924 6.33533 6.44654 6.48211 6.52682 6.61440 6.68557 6.76366 6.96893 7.02232 7.11249 7.24521 7.53916 7.57952 7.79943 7.97607 8.20905 8.49433 9.03260 9.63570 11.10014 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.033514 B = 0.007316 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.261595 B = 3826.130832 C = 4243.172565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.057 3.943 4 H 0.024 0.976 5 C -0.501 4.501 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.275 1.275 13 C -0.088 4.088 14 H 0.074 0.926 15 C -0.119 4.119 16 C -0.104 4.104 17 C -0.411 4.411 18 S 1.221 4.779 19 O -0.874 6.874 20 C -0.435 4.435 21 C -0.083 4.083 22 H 0.034 0.966 23 H 0.020 0.980 24 H 0.063 0.937 25 H 0.016 0.984 26 H 0.087 0.913 27 H 0.258 0.742 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 2.759 -6.667 8.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.039 3.961 4 H 0.042 0.958 5 C -0.539 4.539 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.200 1.200 13 C -0.106 4.106 14 H 0.092 0.908 15 C -0.157 4.157 16 C -0.142 4.142 17 C -0.549 4.549 18 S 1.421 4.579 19 O -0.870 6.870 20 C -0.574 4.574 21 C -0.122 4.122 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.034 0.966 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.444 2.412 -7.023 8.654 hybrid contribution 1.672 1.403 -0.094 2.185 sum -2.772 3.815 -7.117 8.537 Atomic orbital electron populations 1.21686 0.98171 0.98493 1.00852 1.21578 0.94247 0.99722 1.00217 1.18760 0.95793 0.91425 0.90162 0.95823 1.21133 1.30942 1.11569 0.90271 0.92399 1.24922 0.95240 0.94997 0.98752 1.69875 1.37103 1.22933 1.23030 0.86753 0.78596 0.80190 0.83394 1.20831 1.21574 1.20001 1.21412 1.00339 0.94056 0.94832 0.90808 1.21663 0.96274 0.95261 1.02486 1.19959 1.01140 1.01094 0.92019 1.26257 1.07114 1.15596 1.05897 1.70636 1.00051 0.92945 0.94275 1.93012 1.77354 1.83682 1.32917 1.27557 1.15863 1.09322 1.04650 1.21367 1.02606 0.97847 0.90377 0.94693 0.96107 0.91824 0.96577 0.89474 0.93216 0.93395 0.89151 0.90583 0.92436 0.87990 0.90392 0.88612 0.89710 0.91736 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.26 37.16 0.34 -2.20 16 2 C -0.12 -2.53 5.07 -26.73 -0.14 -2.66 16 3 C 0.06 1.22 1.47 -91.77 -0.13 1.08 16 4 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.50 -11.94 6.10 -34.44 -0.21 -12.15 16 6 H 0.06 1.35 7.54 -52.49 -0.40 0.95 16 7 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 8 N -0.89 -23.89 11.32 55.43 0.63 -23.26 16 9 Si 0.88 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 C -0.09 -1.46 0.90 -91.31 -0.08 -1.55 16 14 H 0.07 1.15 5.50 -51.93 -0.29 0.86 16 15 C -0.12 -1.89 4.94 -27.35 -0.14 -2.03 16 16 C -0.10 -1.38 4.99 -30.22 -0.15 -1.54 16 17 C -0.41 -5.19 6.05 33.57 0.20 -4.99 16 18 S 1.22 16.24 12.99 -107.50 -1.40 14.84 16 19 O -0.87 -16.47 18.14 -35.23 -0.64 -17.11 16 20 C -0.44 -5.92 5.57 37.56 0.21 -5.71 16 21 C -0.08 -1.24 4.04 -26.31 -0.11 -1.34 16 22 H 0.03 0.56 6.64 -51.93 -0.34 0.21 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 1.31 7.04 -51.93 -0.37 0.95 16 25 H 0.02 0.30 6.75 -51.93 -0.35 -0.05 16 26 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 27 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.05 0.72 6.23 -51.93 -0.32 0.40 16 29 H 0.09 1.65 6.82 -51.93 -0.35 1.29 16 30 H 0.08 0.94 7.00 -51.93 -0.36 0.58 16 31 H 0.06 0.75 8.13 -51.92 -0.42 0.33 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.27 8.14 -51.70 -0.42 0.85 16 35 H 0.08 1.16 7.06 -51.70 -0.36 0.79 16 36 H 0.06 0.90 7.16 -51.93 -0.37 0.53 16 37 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 LS Contribution 285.89 15.07 4.31 4.31 Total: -1.00 -29.64 285.89 -8.33 -37.97 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.92 Total: -0.12 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -0.29 Total: -31.60 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.63 Total: -23.26 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.64 Total: -17.11 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 16.24 SS G_CDS: -1.40 Total: 14.84 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.64 -8.33 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260826004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.071 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds