Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47435 * 2 1 4 4 H 1.08996 * 109.47278 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46901 * 59.91774 * 3 2 1 6 6 H 1.08001 * 120.00127 * 240.00304 * 5 3 2 7 7 C 1.37885 * 119.99795 * 60.00365 * 5 3 2 8 8 N 1.31511 * 119.99675 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00022 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47003 * 89.99843 * 9 7 5 11 11 H 1.48496 * 109.46705 * 209.99885 * 9 7 5 12 12 H 1.48500 * 109.47037 * 329.99662 * 9 7 5 13 13 C 1.53006 * 109.46957 * 299.92349 * 3 2 1 14 14 H 1.09003 * 109.49053 * 64.32646 * 13 3 2 15 15 C 1.51588 * 109.47753 * 184.35529 * 13 3 2 16 16 C 1.53182 * 106.87887 * 222.72876 * 15 13 3 17 17 C 1.45384 * 115.33480 * 268.25805 * 16 15 13 18 18 S 1.83634 * 109.69557 * 64.73401 * 17 16 15 19 19 O 1.42102 * 109.47300 * 174.76219 * 18 17 16 20 20 C 1.79973 * 102.84222 * 291.06885 * 18 17 16 21 21 C 1.53044 * 109.62375 * 304.34164 * 13 3 2 22 22 H 1.09000 * 109.47145 * 65.08664 * 1 2 3 23 23 H 1.09004 * 109.47175 * 185.08654 * 1 2 3 24 24 H 1.08996 * 109.47352 * 305.08652 * 1 2 3 25 25 H 1.09001 * 109.47097 * 240.00155 * 2 1 3 26 26 H 1.09003 * 109.47165 * 119.99954 * 2 1 3 27 27 H 0.97007 * 119.99746 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.98819 * 103.35954 * 15 13 3 29 29 H 1.08999 * 109.98717 * 342.09525 * 15 13 3 30 30 H 1.08997 * 108.31130 * 29.78047 * 16 15 13 31 31 H 1.09008 * 108.30785 * 146.92955 * 16 15 13 32 32 H 1.08998 * 109.43080 * 184.79818 * 17 16 15 33 33 H 1.09000 * 109.43659 * 304.66218 * 17 16 15 34 34 H 1.08998 * 108.74872 * 207.64472 * 20 18 17 35 35 H 1.09001 * 108.75244 * 325.87935 * 20 18 17 36 36 H 1.08997 * 108.29456 * 76.66812 * 21 13 3 37 37 H 1.09006 * 108.04425 * 319.72496 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5361 2.1535 1.2295 6 1 0.9153 3.0315 1.1292 7 6 1.8675 1.6829 2.4824 8 7 2.6230 0.6135 2.6045 9 14 1.2422 2.5638 4.0065 10 1 -0.0663 1.9884 4.4089 11 1 2.2189 2.3936 5.1121 12 1 1.0772 4.0095 3.7099 13 6 1.5316 2.1632 -1.2503 14 1 0.4443 2.2311 -1.2141 15 6 2.1236 3.5576 -1.3058 16 6 0.9943 4.5039 -1.7248 17 6 0.8752 4.7354 -3.1552 18 16 0.4219 3.1693 -4.0000 19 8 0.1882 3.4249 -5.3782 20 6 1.9089 2.1719 -3.8186 21 6 1.9503 1.3836 -2.4989 22 1 -0.3633 0.4329 -0.9320 23 1 -0.3634 -1.0236 0.0911 24 1 -0.3634 0.5907 0.8409 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.8559 0.2822 3.4860 28 1 2.9294 3.5914 -2.0391 29 1 2.5020 3.8411 -0.3237 30 1 0.0514 4.0923 -1.3649 31 1 1.1546 5.4655 -1.2371 32 1 0.1034 5.4829 -3.3385 33 1 1.8275 5.0952 -3.5449 34 1 1.9621 1.4679 -4.6491 35 1 2.7782 2.8282 -3.8602 36 1 1.2955 0.5178 -2.5973 37 1 2.9683 1.0244 -2.3472 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260826004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = -80.006738 kcal Electronic energy + Delta-G solvation = -16872.661399 eV Core-core repulsion = 14353.974857 eV Total energy + Delta-G solvation = -2518.686542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.47877 -36.78550 -35.86919 -34.00211 -32.62499 -30.44344 -27.77736 -26.38897 -24.45916 -23.10866 -21.61918 -20.00593 -18.12036 -17.91636 -16.85776 -16.49337 -16.21825 -15.59382 -15.48749 -15.07932 -14.72745 -14.25711 -13.92977 -13.80062 -13.56281 -13.35336 -12.95088 -12.70850 -12.58604 -12.23035 -12.19115 -11.94447 -11.81290 -11.49672 -11.38514 -11.23335 -11.02447 -10.72209 -10.51263 -10.24702 -10.14962 -9.04892 -7.89043 -5.96951 0.62461 1.49302 1.53183 1.59045 1.70024 2.56905 2.88435 3.40741 3.86891 3.94070 4.17290 4.26930 4.36478 4.39622 4.69891 4.81814 4.90115 4.96975 4.98344 5.09362 5.11788 5.15135 5.28796 5.43121 5.44870 5.53599 5.59819 5.67904 5.80598 5.88404 5.93992 5.97158 6.24176 6.45718 6.63363 7.16398 7.68977 9.15310 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.033514 B = 0.007316 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.261595 B = 3826.130832 C = 4243.172565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.119 4.119 3 C 0.056 3.944 4 H -0.016 1.016 5 C -0.493 4.493 6 H 0.065 0.935 7 C 0.011 3.989 8 N -0.923 5.923 9 Si 0.933 3.067 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.266 1.266 13 C -0.083 4.083 14 H 0.093 0.907 15 C -0.120 4.120 16 C -0.100 4.100 17 C -0.405 4.405 18 S 1.262 4.738 19 O -0.927 6.927 20 C -0.432 4.432 21 C -0.077 4.077 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.042 0.958 25 H 0.032 0.968 26 H 0.046 0.954 27 H 0.252 0.748 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 3.731 -7.683 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C 0.038 3.962 4 H 0.002 0.998 5 C -0.532 4.532 6 H 0.083 0.917 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.761 3.239 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.190 1.190 13 C -0.101 4.101 14 H 0.111 0.889 15 C -0.158 4.158 16 C -0.139 4.139 17 C -0.544 4.544 18 S 1.464 4.536 19 O -0.923 6.923 20 C -0.570 4.570 21 C -0.116 4.116 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.983 3.393 -8.052 10.590 hybrid contribution 2.222 1.116 0.248 2.499 sum -3.761 4.509 -7.804 9.766 Atomic orbital electron populations 1.21615 0.96061 0.99238 1.01728 1.21486 0.96103 0.99064 0.99066 1.18703 0.93446 0.92271 0.91815 0.99774 1.21519 1.29508 1.11165 0.90965 0.91654 1.25574 0.95957 0.95715 1.01360 1.70038 1.38983 1.24551 1.22896 0.85942 0.77740 0.79733 0.80526 1.20618 1.22649 1.18991 1.21321 1.01268 0.94139 0.93409 0.88879 1.21595 0.97482 0.95445 1.01264 1.19892 1.00589 1.00847 0.92524 1.26185 1.07806 1.15435 1.04969 1.70047 0.98994 0.92633 0.91963 1.92927 1.78718 1.84841 1.35776 1.27467 1.16102 1.09498 1.03977 1.21241 1.02115 0.98186 0.90062 0.91245 0.94989 0.93925 0.94921 0.93508 0.93912 0.92930 0.91928 0.89024 0.91687 0.86023 0.90537 0.87875 0.89770 0.90278 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.26 71.98 0.67 -3.93 16 2 C -0.12 -4.98 5.07 30.59 0.15 -4.82 16 3 C 0.06 2.39 1.47 -11.54 -0.02 2.38 16 4 H -0.02 -0.80 8.14 -2.39 -0.02 -0.82 16 5 C -0.49 -23.37 6.10 25.60 0.16 -23.21 16 6 H 0.07 2.94 7.54 -2.91 -0.02 2.92 16 7 C 0.01 0.56 5.30 84.66 0.45 1.01 16 8 N -0.92 -51.06 11.32 21.45 0.24 -50.82 16 9 Si 0.93 41.13 29.54 68.60 2.03 43.16 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 C -0.08 -2.60 0.90 -11.24 -0.01 -2.61 16 14 H 0.09 2.57 5.50 -2.39 -0.01 2.55 16 15 C -0.12 -3.60 4.94 30.19 0.15 -3.45 16 16 C -0.10 -2.34 4.99 28.33 0.14 -2.20 16 17 C -0.41 -8.83 6.05 69.66 0.42 -8.41 16 18 S 1.26 29.78 12.99 -56.49 -0.73 29.04 16 19 O -0.93 -32.88 18.14 -148.98 -2.70 -35.58 16 20 C -0.43 -10.62 5.57 72.24 0.40 -10.21 16 21 C -0.08 -2.12 4.04 30.87 0.12 -1.99 16 22 H 0.07 1.96 6.64 -2.39 -0.02 1.94 16 23 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.04 1.68 7.04 -2.39 -0.02 1.67 16 25 H 0.03 1.22 6.75 -2.39 -0.02 1.20 16 26 H 0.05 2.35 6.07 -2.39 -0.01 2.34 16 27 H 0.25 13.62 8.31 -92.70 -0.77 12.85 16 28 H 0.05 1.50 6.23 -2.39 -0.01 1.49 16 29 H 0.06 2.24 6.82 -2.39 -0.02 2.22 16 30 H 0.09 1.89 7.00 -2.39 -0.02 1.87 16 31 H 0.06 1.48 8.13 -2.38 -0.02 1.46 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.10 2.45 8.14 -2.54 -0.02 2.43 16 35 H 0.08 2.10 7.06 -2.53 -0.02 2.09 16 36 H 0.08 1.95 7.16 -2.39 -0.02 1.93 16 37 H 0.05 1.46 7.94 -2.38 -0.02 1.44 16 Total: -1.00 -64.40 285.89 2.50 -61.90 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.03 Total: 9.77 kcal Atomic # 6 Polarization: -60.11 SS G_CDS: 2.64 Total: -57.47 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.24 Total: -50.82 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -2.70 Total: -35.58 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 29.78 SS G_CDS: -0.73 Total: 29.04 kcal Total: -64.40 2.50 -61.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260826004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.111 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds