Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38774 * 119.77589 * 2 1 4 4 C 1.36611 * 120.67291 * 180.02562 * 3 2 1 5 5 C 1.39741 * 119.88301 * 359.97438 * 4 3 2 6 6 N 1.35780 * 133.60211 * 180.02562 * 5 4 3 7 7 C 1.30113 * 109.64391 * 180.02562 * 6 5 4 8 8 C 1.50701 * 124.95160 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47340 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47239 * 300.02802 * 8 7 6 11 11 C 1.50708 * 109.46882 * 60.02771 * 8 7 6 12 12 H 1.08000 * 119.99958 * 356.76591 * 11 8 7 13 13 C 1.37869 * 120.00085 * 176.76422 * 11 8 7 14 14 N 1.31525 * 119.99911 * 352.54774 * 13 11 8 15 15 Si 1.86797 * 120.00174 * 172.54574 * 13 11 8 16 16 H 1.48499 * 109.47298 * 265.08410 * 15 13 11 17 17 H 1.48493 * 109.47024 * 25.08702 * 15 13 11 18 18 H 1.48499 * 109.47194 * 145.08818 * 15 13 11 19 19 N 1.36034 * 110.09551 * 0.22887 * 7 6 5 20 20 C 1.46505 * 126.34741 * 179.73568 * 19 7 6 21 21 C 1.38047 * 107.30722 * 359.63322 * 19 7 6 22 22 C 1.37854 * 119.77809 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.47024 * 89.99753 * 1 2 3 24 24 H 1.08991 * 109.47128 * 209.99856 * 1 2 3 25 25 H 1.08998 * 109.47010 * 330.00339 * 1 2 3 26 26 H 1.07998 * 119.66934 * 0.02562 * 3 2 1 27 27 H 1.07993 * 120.05492 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46962 * 299.09131 * 10 8 7 29 29 H 1.08994 * 109.47330 * 59.09552 * 10 8 7 30 30 H 1.09002 * 109.47190 * 179.09299 * 10 8 7 31 31 H 0.97001 * 119.99678 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.46830 * 89.99707 * 20 19 7 33 33 H 1.08996 * 109.47206 * 209.99862 * 20 19 7 34 34 H 1.09008 * 109.47197 * 330.00400 * 20 19 7 35 35 H 1.08008 * 120.15200 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.2045 0.0000 4 6 3.5621 1.2259 -0.0005 5 6 4.2772 0.0253 -0.0005 6 7 5.6012 -0.2760 -0.0005 7 6 5.7557 -1.5679 -0.0011 8 6 7.0847 -2.2784 -0.0018 9 1 6.9207 -3.3560 -0.0026 10 6 7.8744 -1.8818 -1.2508 11 6 7.8628 -1.8897 1.2290 12 1 7.4601 -1.1580 1.9137 13 6 9.0886 -2.4682 1.4808 14 7 9.5133 -3.4619 0.7311 15 14 10.1464 -1.8407 2.8868 16 1 11.1182 -0.8445 2.3688 17 1 9.2808 -1.2019 3.9105 18 1 10.8811 -2.9768 3.4988 19 7 4.5428 -2.1837 -0.0066 20 6 4.3027 -3.6290 -0.0143 21 6 3.5799 -1.1945 -0.0012 22 6 2.1916 -1.1965 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6471 2.1345 0.0004 27 1 4.0883 2.1690 -0.0009 28 1 7.3190 -2.1775 -2.1408 29 1 8.0246 -0.8023 -1.2581 30 1 8.8422 -2.3832 -1.2432 31 1 10.3760 -3.8686 0.9081 32 1 4.2412 -3.9925 1.0114 33 1 3.3663 -3.8390 -0.5310 34 1 5.1223 -4.1307 -0.5290 35 1 1.6505 -2.1312 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260861660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = 56.637606 kcal Electronic energy + Delta-G solvation = -17187.334596 eV Core-core repulsion = 14571.422196 eV Total energy + Delta-G solvation = -2615.912399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52550 -37.49537 -34.24485 -33.72615 -31.42192 -30.62767 -29.45234 -26.47624 -25.74566 -25.16738 -22.98575 -20.96741 -20.94678 -18.86989 -16.83436 -16.41432 -16.05009 -15.13367 -14.96493 -14.44953 -13.82627 -13.59248 -13.51162 -12.93996 -12.66317 -12.63924 -12.25253 -12.08390 -11.74932 -11.57371 -11.16382 -10.99938 -10.91722 -10.59392 -10.42187 -10.28018 -9.87602 -9.76370 -9.19224 -9.05765 -8.44957 -7.76137 -7.38302 -6.12942 -4.14782 1.44404 1.94281 3.22136 3.29913 3.36494 3.41156 3.51673 4.33470 4.42941 4.81654 5.07018 5.10589 5.17868 5.22797 5.38523 5.48720 5.53926 5.65293 5.75624 5.81211 5.85680 5.95870 6.07126 6.24973 6.52862 6.65890 6.79650 6.89067 6.94291 7.04533 7.05440 7.33333 7.48586 7.69161 7.83134 7.92082 8.20202 8.79411 8.87035 9.48654 10.95862 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.005962 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.653348 B = 4695.293887 C = 4974.436492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.070 4.070 5 C 0.050 3.950 6 N -0.502 5.502 7 C 0.340 3.660 8 C 0.111 3.889 9 H 0.049 0.951 10 C -0.124 4.124 11 C -0.501 4.501 12 H 0.063 0.937 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.278 1.278 17 H -0.273 1.273 18 H -0.287 1.287 19 N -0.502 5.502 20 C 0.083 3.917 21 C 0.032 3.968 22 C -0.107 4.107 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.011 0.989 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 1.740 -2.464 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.097 4.097 3 C -0.155 4.155 4 C -0.089 4.089 5 C -0.069 4.069 6 N -0.220 5.220 7 C 0.076 3.924 8 C 0.091 3.909 9 H 0.067 0.933 10 C -0.183 4.183 11 C -0.540 4.540 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.530 5.530 15 Si 0.726 3.274 16 H -0.204 1.204 17 H -0.198 1.198 18 H -0.213 1.213 19 N -0.191 5.191 20 C -0.059 4.059 21 C -0.077 4.077 22 C -0.128 4.128 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.158 2.070 -2.484 13.549 hybrid contribution -0.020 -0.419 0.776 0.882 sum -13.178 1.650 -1.708 13.390 Atomic orbital electron populations 1.20662 0.91371 1.02225 1.01743 1.19406 0.95337 0.92309 1.02609 1.20351 0.93432 0.97115 1.04561 1.19921 0.93040 0.95687 1.00269 1.19319 0.90456 0.92743 1.04396 1.70582 1.14691 1.12286 1.24417 1.25063 0.88169 0.87947 0.91199 1.17663 0.82344 0.94211 0.96717 0.93298 1.21678 1.01499 1.00893 0.94219 1.20915 1.02987 1.23922 1.06200 0.91900 1.24902 0.97624 0.94409 0.96778 1.69932 1.20539 1.22671 1.39829 0.86458 0.80420 0.78465 0.82028 1.20417 1.19809 1.21258 1.45458 1.05950 1.06369 1.61313 1.21864 1.02978 0.77864 1.03210 1.18880 0.91448 0.89786 1.07569 1.19642 0.89580 0.97781 1.05841 0.91723 0.92102 0.91801 0.86212 0.85916 0.97022 0.93637 0.90173 0.92732 0.91094 0.90812 0.89028 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.00 36.01 0.36 -0.67 16 2 C -0.09 -1.33 5.88 -104.56 -0.62 -1.95 16 3 C -0.13 -1.95 9.61 -39.97 -0.38 -2.33 16 4 C -0.07 -1.22 10.05 -39.61 -0.40 -1.62 16 5 C 0.05 1.07 7.23 -84.70 -0.61 0.46 16 6 N -0.50 -12.17 11.26 -8.23 -0.09 -12.26 16 7 C 0.34 7.97 6.31 -154.82 -0.98 6.99 16 8 C 0.11 2.76 2.51 -92.92 -0.23 2.53 16 9 H 0.05 1.22 6.66 -51.93 -0.35 0.88 16 10 C -0.12 -2.98 8.99 37.16 0.33 -2.65 16 11 C -0.50 -13.79 8.49 -34.44 -0.29 -14.08 16 12 H 0.06 1.81 7.75 -52.49 -0.41 1.41 16 13 C 0.06 1.75 5.22 -17.82 -0.09 1.66 16 14 N -0.89 -24.48 11.91 55.43 0.66 -23.82 16 15 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 N -0.50 -10.03 3.21 -118.50 -0.38 -10.41 16 20 C 0.08 1.26 10.81 59.85 0.65 1.91 16 21 C 0.03 0.63 6.87 -83.99 -0.58 0.05 16 22 C -0.11 -1.69 9.69 -39.50 -0.38 -2.08 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 26 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 27 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 2.03 6.61 -51.93 -0.34 1.69 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.37 7.01 -51.92 -0.36 1.00 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -30.61 296.29 -8.41 -39.02 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.82 Total: -1.52 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.22 Total: -11.78 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.19 Total: -46.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.61 -8.41 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.659 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds