Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38774 * 119.77589 * 2 1 4 4 C 1.36611 * 120.67291 * 180.02562 * 3 2 1 5 5 C 1.39741 * 119.88301 * 359.97438 * 4 3 2 6 6 N 1.35780 * 133.60211 * 180.02562 * 5 4 3 7 7 C 1.30113 * 109.64391 * 180.02562 * 6 5 4 8 8 C 1.50701 * 124.95160 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47340 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47239 * 300.02802 * 8 7 6 11 11 C 1.50708 * 109.46882 * 60.02771 * 8 7 6 12 12 H 1.08000 * 119.99958 * 356.76591 * 11 8 7 13 13 C 1.37869 * 120.00085 * 176.76422 * 11 8 7 14 14 N 1.31525 * 119.99911 * 352.54774 * 13 11 8 15 15 Si 1.86797 * 120.00174 * 172.54574 * 13 11 8 16 16 H 1.48499 * 109.47298 * 265.08410 * 15 13 11 17 17 H 1.48493 * 109.47024 * 25.08702 * 15 13 11 18 18 H 1.48499 * 109.47194 * 145.08818 * 15 13 11 19 19 N 1.36034 * 110.09551 * 0.22887 * 7 6 5 20 20 C 1.46505 * 126.34741 * 179.73568 * 19 7 6 21 21 C 1.38047 * 107.30722 * 359.63322 * 19 7 6 22 22 C 1.37854 * 119.77809 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.47024 * 89.99753 * 1 2 3 24 24 H 1.08991 * 109.47128 * 209.99856 * 1 2 3 25 25 H 1.08998 * 109.47010 * 330.00339 * 1 2 3 26 26 H 1.07998 * 119.66934 * 0.02562 * 3 2 1 27 27 H 1.07993 * 120.05492 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46962 * 299.09131 * 10 8 7 29 29 H 1.08994 * 109.47330 * 59.09552 * 10 8 7 30 30 H 1.09002 * 109.47190 * 179.09299 * 10 8 7 31 31 H 0.97001 * 119.99678 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.46830 * 89.99707 * 20 19 7 33 33 H 1.08996 * 109.47206 * 209.99862 * 20 19 7 34 34 H 1.09008 * 109.47197 * 330.00400 * 20 19 7 35 35 H 1.08008 * 120.15200 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.2045 0.0000 4 6 3.5621 1.2259 -0.0005 5 6 4.2772 0.0253 -0.0005 6 7 5.6012 -0.2760 -0.0005 7 6 5.7557 -1.5679 -0.0011 8 6 7.0847 -2.2784 -0.0018 9 1 6.9207 -3.3560 -0.0026 10 6 7.8744 -1.8818 -1.2508 11 6 7.8628 -1.8897 1.2290 12 1 7.4601 -1.1580 1.9137 13 6 9.0886 -2.4682 1.4808 14 7 9.5133 -3.4619 0.7311 15 14 10.1464 -1.8407 2.8868 16 1 11.1182 -0.8445 2.3688 17 1 9.2808 -1.2019 3.9105 18 1 10.8811 -2.9768 3.4988 19 7 4.5428 -2.1837 -0.0066 20 6 4.3027 -3.6290 -0.0143 21 6 3.5799 -1.1945 -0.0012 22 6 2.1916 -1.1965 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6471 2.1345 0.0004 27 1 4.0883 2.1690 -0.0009 28 1 7.3190 -2.1775 -2.1408 29 1 8.0246 -0.8023 -1.2581 30 1 8.8422 -2.3832 -1.2432 31 1 10.3760 -3.8686 0.9081 32 1 4.2412 -3.9925 1.0114 33 1 3.3663 -3.8390 -0.5310 34 1 5.1223 -4.1307 -0.5290 35 1 1.6505 -2.1312 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260861660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = 39.703020 kcal Electronic energy + Delta-G solvation = -17188.068934 eV Core-core repulsion = 14571.422196 eV Total energy + Delta-G solvation = -2616.646738 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.99529 -38.78192 -36.16830 -35.14588 -33.13989 -31.99692 -30.83559 -27.79144 -27.30779 -26.90792 -24.60026 -22.45739 -22.25171 -20.51723 -18.53501 -17.94789 -17.60897 -16.74322 -16.58833 -15.88967 -15.21300 -14.86712 -14.74032 -14.45659 -14.27156 -13.94993 -13.61676 -13.52977 -12.98651 -12.97906 -12.82364 -12.73520 -12.44492 -12.30742 -12.18014 -11.88860 -11.73565 -11.24452 -11.10178 -10.68769 -10.52800 -9.11641 -8.80341 -8.20393 -6.29207 0.10375 0.65286 1.39119 1.41870 1.51418 1.83355 1.97333 2.42821 2.97440 3.10354 3.47005 3.73278 3.91370 4.06872 4.21750 4.35430 4.42639 4.54726 4.58441 4.59447 4.74468 4.84633 4.89233 4.96796 4.99767 5.03139 5.25059 5.30007 5.42223 5.52918 5.68292 5.72694 5.76865 5.80971 6.09703 6.15322 6.39134 6.72298 7.20649 7.36694 8.87127 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.005962 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.653348 B = 4695.293887 C = 4974.436492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.080 4.080 3 C -0.123 4.123 4 C -0.087 4.087 5 C -0.001 4.001 6 N -0.539 5.539 7 C 0.309 3.691 8 C 0.115 3.885 9 H 0.042 0.958 10 C -0.110 4.110 11 C -0.520 4.520 12 H 0.038 0.962 13 C 0.028 3.972 14 N -0.909 5.909 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.273 1.273 19 N -0.501 5.501 20 C 0.076 3.924 21 C 0.022 3.978 22 C -0.115 4.115 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.159 0.841 27 H 0.126 0.874 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.268 0.732 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.788 1.919 -2.324 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.107 4.107 5 C -0.119 4.119 6 N -0.259 5.259 7 C 0.043 3.957 8 C 0.095 3.905 9 H 0.060 0.940 10 C -0.169 4.169 11 C -0.559 4.559 12 H 0.056 0.944 13 C -0.173 4.173 14 N -0.547 5.547 15 Si 0.780 3.220 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.198 1.198 19 N -0.191 5.191 20 C -0.065 4.065 21 C -0.088 4.088 22 C -0.136 4.136 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.176 0.824 27 H 0.144 0.856 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.042 2.229 -2.350 16.366 hybrid contribution 0.678 -0.395 0.715 1.061 sum -15.365 1.835 -1.635 15.560 Atomic orbital electron populations 1.20770 0.87714 1.03943 1.03358 1.20025 0.97793 0.91328 0.98987 1.20835 0.92223 0.99207 1.02008 1.20215 0.94497 0.94853 1.01098 1.19818 0.89756 0.95044 1.07286 1.70391 1.17254 1.13200 1.25022 1.24501 0.88762 0.88208 0.94179 1.17415 0.83444 0.93853 0.95801 0.94011 1.21490 1.00813 0.99556 0.95056 1.21000 1.04044 1.23759 1.07114 0.94370 1.25529 0.98339 0.94465 0.98927 1.69993 1.20912 1.23030 1.40780 0.85604 0.78794 0.78268 0.79360 1.20019 1.20379 1.19850 1.45551 1.05026 1.07979 1.60498 1.22154 1.04665 0.75471 1.04173 1.19305 0.92732 0.88855 1.07864 1.20075 0.87970 0.99971 1.05597 0.89930 0.90707 0.89916 0.82378 0.85571 0.95151 0.95079 0.91832 0.92326 0.90441 0.87131 0.89426 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.00 71.24 0.71 -0.75 16 2 C -0.08 -1.92 5.88 -19.83 -0.12 -2.03 16 3 C -0.12 -3.18 9.61 22.02 0.21 -2.97 16 4 C -0.09 -3.01 10.05 22.25 0.22 -2.79 16 5 C 0.00 -0.03 7.23 39.45 0.29 0.26 16 6 N -0.54 -27.41 11.26 -179.96 -2.03 -29.44 16 7 C 0.31 15.07 6.31 137.92 0.87 15.94 16 8 C 0.12 5.98 2.51 -12.28 -0.03 5.95 16 9 H 0.04 2.18 6.66 -2.39 -0.02 2.17 16 10 C -0.11 -5.53 8.99 71.98 0.65 -4.88 16 11 C -0.52 -29.84 8.49 25.60 0.22 -29.62 16 12 H 0.04 2.32 7.75 -2.91 -0.02 2.30 16 13 C 0.03 1.52 5.22 84.65 0.44 1.97 16 14 N -0.91 -50.71 11.91 21.45 0.26 -50.46 16 15 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 N -0.50 -20.25 3.21 -528.83 -1.70 -21.94 16 20 C 0.08 2.26 10.81 127.77 1.38 3.64 16 21 C 0.02 0.83 6.87 38.86 0.27 1.09 16 22 C -0.12 -3.30 9.69 22.32 0.22 -3.09 16 23 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 25 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 26 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 3.34 6.61 -2.39 -0.02 3.32 16 31 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.09 2.63 7.01 -2.38 -0.02 2.62 16 35 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -69.30 296.29 4.96 -64.34 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.07 Total: 8.29 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 5.33 Total: -17.29 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.47 Total: -101.84 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.30 4.96 -64.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.046 kcal (2) G-P(sol) polarization free energy of solvation -69.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds