Wall clock time and date at job start Mon Mar 30 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36834 * 125.03570 * 2 1 4 4 H 0.96997 * 125.06073 * 359.96975 * 3 2 1 5 5 C 1.37685 * 109.87389 * 180.02562 * 3 2 1 6 6 C 1.39123 * 133.50291 * 180.02562 * 5 3 2 7 7 C 1.37751 * 119.77773 * 179.97438 * 6 5 3 8 8 C 1.38831 * 120.66265 * 0.02562 * 7 6 5 9 9 C 1.36625 * 120.53211 * 359.97438 * 8 7 6 10 10 C 1.39632 * 119.76540 * 359.69537 * 9 8 7 11 11 C 1.34233 * 125.03682 * 180.02562 * 2 1 3 12 12 C 1.50708 * 126.49881 * 359.97438 * 11 2 1 13 13 C 1.53001 * 109.46804 * 90.02524 * 12 11 2 14 14 H 1.09002 * 109.47550 * 55.00373 * 13 12 11 15 15 N 1.46894 * 109.47180 * 294.99929 * 13 12 11 16 16 C 1.50705 * 109.46788 * 174.99991 * 13 12 11 17 17 H 1.07999 * 120.00005 * 34.90921 * 16 13 12 18 18 C 1.37880 * 119.99984 * 214.91128 * 16 13 12 19 19 N 1.31513 * 119.99879 * 184.79882 * 18 16 13 20 20 Si 1.86803 * 119.99921 * 4.79737 * 18 16 13 21 21 H 1.48495 * 109.47077 * 84.87881 * 20 18 16 22 22 H 1.48502 * 109.47096 * 204.87918 * 20 18 16 23 23 H 1.48503 * 109.47187 * 324.87865 * 20 18 16 24 24 H 1.09006 * 109.47296 * 269.99902 * 1 2 3 25 25 H 1.09006 * 109.47325 * 29.99646 * 1 2 3 26 26 H 1.08997 * 109.47340 * 149.99660 * 1 2 3 27 27 H 1.07999 * 120.11098 * 0.02562 * 6 5 3 28 28 H 1.07993 * 119.66645 * 179.97438 * 7 6 5 29 29 H 1.08007 * 119.73357 * 179.97438 * 8 7 6 30 30 H 1.08001 * 120.11829 * 180.02562 * 9 8 7 31 31 H 1.08996 * 109.47107 * 330.02509 * 12 11 2 32 32 H 1.09005 * 109.46800 * 210.02353 * 12 11 2 33 33 H 1.00900 * 111.00174 * 173.62028 * 15 13 12 34 34 H 1.00906 * 111.00224 * 297.56576 * 15 13 12 35 35 H 0.97001 * 119.99995 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9623 2.0324 -0.0004 5 6 3.6214 0.7603 -0.0006 6 6 4.8097 1.4838 -0.0004 7 6 6.0159 0.8183 -0.0006 8 6 6.0589 -0.5693 -0.0016 9 6 4.9041 -1.2995 -0.0018 10 6 3.6704 -0.6456 0.0054 11 6 2.2776 -1.0991 -0.0005 12 6 1.8003 -2.5286 -0.0006 13 6 1.6389 -3.0122 -1.4432 14 1 2.5750 -2.8666 -1.9822 15 7 0.5714 -2.2460 -2.0999 16 6 1.2806 -4.4760 -1.4450 17 1 0.6540 -4.8796 -0.6635 18 6 1.7530 -5.3001 -2.4445 19 7 1.3649 -6.5554 -2.5000 20 14 2.9442 -4.6334 -3.7197 21 1 4.3298 -4.7124 -3.1918 22 1 2.8412 -5.4396 -4.9625 23 1 2.6083 -3.2180 -4.0186 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 4.7867 2.5635 0.0008 28 1 6.9372 1.3817 -0.0009 29 1 7.0129 -1.0757 -0.0021 30 1 4.9454 -2.3788 -0.0021 31 1 0.8411 -2.5914 0.5132 32 1 2.5294 -3.1551 0.5133 33 1 0.5147 -2.4730 -3.0814 34 1 -0.3154 -2.3959 -1.6424 35 1 1.6969 -7.1350 -3.2034 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260868642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:15 Heat of formation + Delta-G solvation = 43.017136 kcal Electronic energy + Delta-G solvation = -17358.493500 eV Core-core repulsion = 14741.990473 eV Total energy + Delta-G solvation = -2616.503027 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91127 -36.80723 -35.35212 -32.35781 -31.34026 -30.59595 -29.32630 -27.62612 -26.11568 -24.80641 -21.87800 -21.04010 -20.22323 -18.42361 -17.34582 -16.80938 -15.98068 -14.96098 -14.76971 -14.35583 -14.28800 -13.65460 -13.47660 -12.92261 -12.61860 -12.58372 -12.29303 -12.12968 -11.94760 -11.25191 -11.18159 -11.04797 -10.95487 -10.76927 -10.43628 -10.22117 -9.75193 -9.42357 -9.01512 -8.61186 -7.76316 -7.39241 -6.99626 -6.13501 -4.15588 1.49542 1.97717 3.18808 3.28847 3.36677 3.41991 3.47484 4.28426 4.38385 5.05990 5.18289 5.20672 5.30636 5.43668 5.62472 5.73202 5.77183 5.86942 5.90292 6.06745 6.27543 6.28385 6.36105 6.49328 6.52046 6.70069 6.85961 6.95219 7.04973 7.18183 7.28471 7.44412 7.61466 7.68202 7.96068 8.34032 8.49844 8.70785 8.93209 9.51173 10.99512 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.008121 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.110584 B = 3447.077576 C = 4247.077926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.079 3.921 3 N -0.599 5.599 4 H 0.406 0.594 5 C 0.094 3.906 6 C -0.138 4.138 7 C -0.108 4.108 8 C -0.158 4.158 9 C -0.065 4.065 10 C -0.099 4.099 11 C -0.132 4.132 12 C -0.028 4.028 13 C 0.184 3.816 14 H 0.040 0.960 15 N -0.848 5.848 16 C -0.549 4.549 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.897 5.897 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.291 1.291 23 H -0.262 1.262 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.322 0.678 34 H 0.320 0.680 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 15.264 4.787 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 N -0.203 5.203 4 H 0.242 0.758 5 C -0.014 4.014 6 C -0.159 4.159 7 C -0.127 4.127 8 C -0.178 4.178 9 C -0.084 4.084 10 C -0.104 4.104 11 C -0.138 4.138 12 C -0.066 4.066 13 C 0.075 3.925 14 H 0.058 0.942 15 N -0.375 5.375 16 C -0.589 4.589 17 H 0.089 0.911 18 C -0.128 4.128 19 N -0.535 5.535 20 Si 0.703 3.297 21 H -0.200 1.200 22 H -0.218 1.218 23 H -0.187 1.187 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.797 15.836 4.906 17.007 hybrid contribution 0.217 -0.300 -1.025 1.090 sum 4.014 15.536 3.881 16.509 Atomic orbital electron populations 1.20511 0.88076 1.04400 1.01662 1.19959 0.93129 0.84902 1.04667 1.41632 1.03908 1.07863 1.66898 0.75795 1.18184 0.84591 0.94261 1.04341 1.19892 0.89946 0.98334 1.07736 1.20659 0.96303 0.94393 1.01371 1.20537 0.97782 0.93877 1.05569 1.20390 0.90679 0.99875 0.97440 1.19237 0.93713 0.91820 1.05674 1.20327 0.89559 0.95502 1.08443 1.20008 0.99551 0.88485 0.98593 1.19328 0.91817 0.90763 0.90590 0.94203 1.59667 1.08743 1.62728 1.06359 1.21809 1.32452 0.92968 1.11641 0.91065 1.25101 0.95664 0.94685 0.97366 1.69929 1.43933 1.05787 1.33825 0.86878 0.82273 0.79476 0.81117 1.20040 1.21782 1.18653 0.91989 0.92485 0.87826 0.87028 0.86479 0.86580 0.86034 0.92471 0.91764 0.86690 0.86870 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.95 36.00 0.36 -0.83 16 2 C 0.08 1.29 7.00 -81.77 -0.57 0.72 16 3 N -0.60 -8.76 6.07 -6.95 -0.04 -8.81 16 4 H 0.41 4.49 8.96 -40.82 -0.37 4.13 16 5 C 0.09 1.54 7.28 -83.99 -0.61 0.93 16 6 C -0.14 -1.95 10.08 -39.43 -0.40 -2.35 16 7 C -0.11 -1.47 10.01 -39.54 -0.40 -1.87 16 8 C -0.16 -2.37 9.97 -39.94 -0.40 -2.76 16 9 C -0.07 -1.15 10.05 -39.64 -0.40 -1.55 16 10 C -0.10 -1.86 6.35 -105.14 -0.67 -2.53 16 11 C -0.13 -2.51 5.31 -102.71 -0.55 -3.06 16 12 C -0.03 -0.57 4.95 -27.88 -0.14 -0.71 16 13 C 0.18 4.26 2.38 -68.86 -0.16 4.09 16 14 H 0.04 1.00 5.30 -51.93 -0.28 0.72 16 15 N -0.85 -17.33 7.66 -5.65 -0.04 -17.38 16 16 C -0.55 -14.88 9.13 -34.44 -0.31 -15.20 16 17 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 18 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 20 Si 0.88 21.61 26.99 -169.99 -4.59 17.03 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.26 -6.31 6.82 56.52 0.39 -5.93 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 1.52 4.91 -51.93 -0.26 1.26 16 27 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.06 1.11 7.69 -51.93 -0.40 0.72 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.32 6.81 9.08 -39.29 -0.36 6.45 16 34 H 0.32 6.09 7.65 -39.29 -0.30 5.79 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -31.07 290.27 -8.35 -39.43 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -4.49 Total: 14.67 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -4.34 Total: -23.09 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.69 Total: -52.41 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.03 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.07 -8.35 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.444 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds