Wall clock time and date at job start Mon Mar 30 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36834 * 125.03570 * 2 1 4 4 H 0.96997 * 125.06073 * 359.96975 * 3 2 1 5 5 C 1.37685 * 109.87389 * 180.02562 * 3 2 1 6 6 C 1.39123 * 133.50291 * 180.02562 * 5 3 2 7 7 C 1.37751 * 119.77773 * 179.97438 * 6 5 3 8 8 C 1.38831 * 120.66265 * 0.02562 * 7 6 5 9 9 C 1.36625 * 120.53211 * 359.97438 * 8 7 6 10 10 C 1.39632 * 119.76540 * 359.69537 * 9 8 7 11 11 C 1.34233 * 125.03682 * 180.02562 * 2 1 3 12 12 C 1.50708 * 126.49881 * 359.97438 * 11 2 1 13 13 C 1.53001 * 109.46804 * 90.02524 * 12 11 2 14 14 H 1.09002 * 109.47550 * 55.00373 * 13 12 11 15 15 N 1.46894 * 109.47180 * 294.99929 * 13 12 11 16 16 C 1.50705 * 109.46788 * 174.99991 * 13 12 11 17 17 H 1.07999 * 120.00005 * 34.90921 * 16 13 12 18 18 C 1.37880 * 119.99984 * 214.91128 * 16 13 12 19 19 N 1.31513 * 119.99879 * 184.79882 * 18 16 13 20 20 Si 1.86803 * 119.99921 * 4.79737 * 18 16 13 21 21 H 1.48495 * 109.47077 * 84.87881 * 20 18 16 22 22 H 1.48502 * 109.47096 * 204.87918 * 20 18 16 23 23 H 1.48503 * 109.47187 * 324.87865 * 20 18 16 24 24 H 1.09006 * 109.47296 * 269.99902 * 1 2 3 25 25 H 1.09006 * 109.47325 * 29.99646 * 1 2 3 26 26 H 1.08997 * 109.47340 * 149.99660 * 1 2 3 27 27 H 1.07999 * 120.11098 * 0.02562 * 6 5 3 28 28 H 1.07993 * 119.66645 * 179.97438 * 7 6 5 29 29 H 1.08007 * 119.73357 * 179.97438 * 8 7 6 30 30 H 1.08001 * 120.11829 * 180.02562 * 9 8 7 31 31 H 1.08996 * 109.47107 * 330.02509 * 12 11 2 32 32 H 1.09005 * 109.46800 * 210.02353 * 12 11 2 33 33 H 1.00900 * 111.00174 * 173.62028 * 15 13 12 34 34 H 1.00906 * 111.00224 * 297.56576 * 15 13 12 35 35 H 0.97001 * 119.99995 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9623 2.0324 -0.0004 5 6 3.6214 0.7603 -0.0006 6 6 4.8097 1.4838 -0.0004 7 6 6.0159 0.8183 -0.0006 8 6 6.0589 -0.5693 -0.0016 9 6 4.9041 -1.2995 -0.0018 10 6 3.6704 -0.6456 0.0054 11 6 2.2776 -1.0991 -0.0005 12 6 1.8003 -2.5286 -0.0006 13 6 1.6389 -3.0122 -1.4432 14 1 2.5750 -2.8666 -1.9822 15 7 0.5714 -2.2460 -2.0999 16 6 1.2806 -4.4760 -1.4450 17 1 0.6540 -4.8796 -0.6635 18 6 1.7530 -5.3001 -2.4445 19 7 1.3649 -6.5554 -2.5000 20 14 2.9442 -4.6334 -3.7197 21 1 4.3298 -4.7124 -3.1918 22 1 2.8412 -5.4396 -4.9625 23 1 2.6083 -3.2180 -4.0186 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 4.7867 2.5635 0.0008 28 1 6.9372 1.3817 -0.0009 29 1 7.0129 -1.0757 -0.0021 30 1 4.9454 -2.3788 -0.0021 31 1 0.8411 -2.5914 0.5132 32 1 2.5294 -3.1551 0.5133 33 1 0.5147 -2.4730 -3.0814 34 1 -0.3154 -2.3959 -1.6424 35 1 1.6969 -7.1350 -3.2034 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260868642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:15 Heat of formation + Delta-G solvation = 22.284241 kcal Electronic energy + Delta-G solvation = -17359.392545 eV Core-core repulsion = 14741.990473 eV Total energy + Delta-G solvation = -2617.402073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.12349 -38.01990 -37.08954 -34.26297 -32.89703 -31.73862 -30.62293 -29.11133 -27.70138 -26.44615 -23.05330 -22.35376 -21.88741 -19.91432 -19.04500 -18.31897 -17.22601 -16.70566 -16.24755 -15.88978 -15.58311 -14.89874 -14.78221 -14.67044 -14.46313 -13.91808 -13.58508 -13.55855 -13.12235 -12.96021 -12.89078 -12.51996 -12.34542 -12.21277 -12.00566 -11.81405 -11.55096 -11.31404 -10.79701 -10.30961 -9.19104 -8.94252 -8.34929 -8.28346 -6.38897 0.31362 0.79641 1.30118 1.33158 1.43822 1.90697 2.29103 2.34684 3.02728 3.08077 3.91262 4.02207 4.19382 4.26974 4.32453 4.47292 4.58384 4.63459 4.68342 4.75537 4.90246 5.01141 5.05673 5.15421 5.26382 5.32101 5.41903 5.51509 5.60999 5.68938 5.80469 5.97692 6.11310 6.19880 6.38261 6.61213 6.73875 6.89857 6.98616 7.31278 8.82064 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.008121 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.110584 B = 3447.077576 C = 4247.077926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.096 3.904 3 N -0.585 5.585 4 H 0.426 0.574 5 C 0.080 3.920 6 C -0.132 4.132 7 C -0.107 4.107 8 C -0.154 4.154 9 C -0.103 4.103 10 C -0.133 4.133 11 C -0.179 4.179 12 C -0.016 4.016 13 C 0.195 3.805 14 H 0.024 0.976 15 N -0.829 5.829 16 C -0.547 4.547 17 H 0.035 0.965 18 C 0.022 3.978 19 N -0.943 5.943 20 Si 0.939 3.061 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.250 1.250 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.321 0.679 34 H 0.331 0.669 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 18.821 4.438 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.011 4.011 3 N -0.191 5.191 4 H 0.265 0.735 5 C -0.028 4.028 6 C -0.152 4.152 7 C -0.126 4.126 8 C -0.173 4.173 9 C -0.121 4.121 10 C -0.138 4.138 11 C -0.185 4.185 12 C -0.054 4.054 13 C 0.084 3.916 14 H 0.042 0.958 15 N -0.356 5.356 16 C -0.587 4.587 17 H 0.053 0.947 18 C -0.177 4.177 19 N -0.583 5.583 20 Si 0.764 3.236 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.174 1.174 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.165 0.835 28 H 0.173 0.827 29 H 0.155 0.845 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.629 19.440 4.568 20.499 hybrid contribution -0.057 -1.364 -0.817 1.591 sum 4.573 18.075 3.751 19.018 Atomic orbital electron populations 1.20585 0.86019 1.04919 1.03103 1.20275 0.94313 0.84719 1.01835 1.41565 1.03221 1.08430 1.65859 0.73510 1.18462 0.85894 0.93534 1.04863 1.20351 0.89033 1.00103 1.05737 1.21120 0.97820 0.93851 0.99834 1.20867 0.97647 0.94934 1.03885 1.20475 0.91872 0.99453 1.00327 1.19516 0.93773 0.93526 1.06973 1.20161 0.90754 0.94941 1.12666 1.19701 0.99180 0.90066 0.96500 1.19148 0.91629 0.88430 0.92350 0.95827 1.59570 1.08691 1.61295 1.06067 1.22113 1.31161 0.95292 1.10095 0.94683 1.25856 0.97378 0.94823 0.99632 1.70061 1.45829 1.07271 1.35141 0.85858 0.79850 0.79311 0.78568 1.20038 1.21367 1.17412 0.90051 0.89877 0.89280 0.83514 0.82709 0.84539 0.87874 0.92142 0.93901 0.86884 0.85737 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.14 9.95 71.23 0.71 -1.44 16 2 C 0.10 2.96 7.00 40.86 0.29 3.25 16 3 N -0.59 -15.44 6.07 -175.91 -1.07 -16.51 16 4 H 0.43 7.76 8.96 -92.71 -0.83 6.93 16 5 C 0.08 2.44 7.28 39.03 0.28 2.72 16 6 C -0.13 -3.22 10.08 22.37 0.23 -2.99 16 7 C -0.11 -2.53 10.01 22.30 0.22 -2.31 16 8 C -0.15 -4.35 9.97 22.03 0.22 -4.13 16 9 C -0.10 -3.66 10.05 22.23 0.22 -3.44 16 10 C -0.13 -4.95 6.35 -20.20 -0.13 -5.08 16 11 C -0.18 -6.79 5.31 -18.63 -0.10 -6.89 16 12 C -0.02 -0.67 4.95 29.85 0.15 -0.52 16 13 C 0.19 9.14 2.38 44.17 0.11 9.25 16 14 H 0.02 1.20 5.30 -2.39 -0.01 1.18 16 15 N -0.83 -33.44 7.66 -171.80 -1.32 -34.76 16 16 C -0.55 -30.69 9.13 25.60 0.23 -30.46 16 17 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 18 C 0.02 1.27 5.47 84.66 0.46 1.73 16 19 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 20 Si 0.94 45.49 26.99 68.60 1.85 47.34 16 21 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.25 -11.54 6.82 99.48 0.68 -10.86 16 24 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.09 2.45 4.91 -2.39 -0.01 2.44 16 27 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.10 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.06 2.43 7.69 -2.39 -0.02 2.41 16 32 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.32 13.23 9.08 -89.69 -0.81 12.41 16 34 H 0.33 12.40 7.65 -89.69 -0.69 11.71 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -69.23 290.27 1.43 -67.80 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -1.23 Total: 34.67 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 2.89 Total: -40.30 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -2.09 Total: -109.51 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.85 Total: 47.34 kcal Total: -69.23 1.43 -67.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.082 kcal (2) G-P(sol) polarization free energy of solvation -69.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds