Wall clock time and date at job start Mon Mar 30 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38515 * 120.35304 * 2 1 4 4 N 1.31645 * 121.52872 * 179.97438 * 3 2 1 5 5 C 1.32705 * 121.73813 * 0.02562 * 4 3 2 6 6 C 1.40474 * 119.70563 * 359.97438 * 5 4 3 7 7 C 1.38446 * 120.36020 * 179.72170 * 2 1 3 8 8 C 1.47553 * 106.23249 * 180.02562 * 6 5 4 9 9 C 1.40891 * 126.98963 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99690 * 0.02562 * 9 8 6 11 11 C 1.39762 * 119.99960 * 180.02562 * 9 8 6 12 12 N 1.31035 * 120.00377 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47262 * 89.99863 * 13 11 9 15 15 H 1.48491 * 109.47110 * 209.99783 * 13 11 9 16 16 H 1.48500 * 109.46872 * 329.99893 * 13 11 9 17 17 C 1.38891 * 106.02651 * 0.02562 * 8 6 5 18 18 N 1.35763 * 109.25856 * 0.02562 * 17 8 6 19 19 C 1.46499 * 124.63026 * 180.02562 * 18 17 8 20 20 C 1.53004 * 109.46991 * 299.97399 * 19 18 17 21 21 C 1.53002 * 109.47228 * 59.97395 * 19 18 17 22 22 H 1.08999 * 109.47015 * 90.00450 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99603 * 1 2 3 24 24 H 1.09000 * 109.47248 * 330.00320 * 1 2 3 25 25 H 1.07997 * 119.23635 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.95959 * 359.97438 * 7 2 1 27 27 H 0.97001 * 120.00155 * 180.02562 * 12 11 9 28 28 H 1.07999 * 125.37285 * 179.97438 * 17 8 6 29 29 H 1.08998 * 109.46981 * 179.97438 * 19 18 17 30 30 H 1.08994 * 109.47004 * 179.97438 * 20 19 18 31 31 H 1.09000 * 109.47260 * 300.00097 * 20 19 18 32 32 H 1.09007 * 109.46879 * 60.00125 * 20 19 18 33 33 H 1.09002 * 109.47119 * 59.99778 * 21 19 18 34 34 H 1.08994 * 109.46984 * 180.02562 * 21 19 18 35 35 H 1.09007 * 109.46840 * 299.99997 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1953 0.0000 4 7 3.5232 1.2223 0.0005 5 6 4.2443 0.1083 0.0005 6 6 3.5982 -1.1391 0.0006 7 6 2.2068 -1.1946 0.0058 8 6 4.6665 -2.1569 0.0012 9 6 4.5040 -3.5564 0.0020 10 1 3.5127 -3.9849 0.0017 11 6 5.6257 -4.3902 0.0031 12 7 6.8286 -3.8703 0.0029 13 14 5.4103 -6.2458 0.0033 14 1 5.3542 -6.7378 -1.3967 15 1 6.5570 -6.8771 0.7044 16 1 4.1482 -6.5974 0.7025 17 6 5.8650 -1.4549 0.0021 18 7 5.6036 -0.1227 0.0026 19 6 6.6262 0.9264 0.0031 20 6 7.4982 0.7880 1.2527 21 6 7.4991 0.7883 -1.2458 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6603 2.1267 -0.0004 26 1 1.6885 -2.1421 0.0108 27 1 7.6071 -4.4490 0.0033 28 1 6.8495 -1.8988 0.0032 29 1 6.1439 1.9038 0.0030 30 1 8.2592 1.5682 1.2528 31 1 6.8763 0.8864 2.1425 32 1 7.9805 -0.1896 1.2527 33 1 6.8779 0.8868 -2.1361 34 1 8.2602 1.5685 -1.2452 35 1 7.9814 -0.1893 -1.2457 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872849.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:43 Heat of formation + Delta-G solvation = 34.066513 kcal Electronic energy + Delta-G solvation = -17407.983188 eV Core-core repulsion = 14791.092032 eV Total energy + Delta-G solvation = -2616.891155 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.89508 -38.91965 -36.27108 -34.76623 -33.93967 -31.33181 -29.95483 -28.16009 -27.48686 -26.69070 -24.01349 -23.00619 -21.65917 -20.43470 -19.02302 -17.44656 -17.17425 -16.73899 -15.87183 -15.80978 -15.36082 -14.94495 -14.47070 -14.30254 -13.97498 -13.64286 -13.56376 -13.22519 -13.14902 -13.03889 -12.98305 -12.82107 -12.50622 -12.47021 -11.94933 -11.91228 -11.83506 -11.66686 -11.14185 -10.64461 -10.03281 -8.74855 -8.65163 -8.41162 -6.00125 0.47705 0.73428 1.39512 1.41781 1.54332 2.16653 2.28236 2.32115 3.10712 3.58947 3.70215 3.82879 4.11840 4.15240 4.23500 4.32720 4.42781 4.55128 4.67598 4.68364 4.82212 4.83096 4.94292 5.00355 5.08107 5.19074 5.25059 5.27154 5.28621 5.30930 5.63597 5.71927 5.90523 6.12292 6.47803 6.58770 6.99083 7.11772 7.18601 7.46881 8.56828 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.009867 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.811989 B = 2837.204364 C = 4361.953317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.203 4.203 3 C 0.116 3.884 4 N -0.527 5.527 5 C 0.240 3.760 6 C -0.205 4.205 7 C -0.041 4.041 8 C -0.022 4.022 9 C -0.451 4.451 10 H 0.065 0.935 11 C 0.014 3.986 12 N -0.854 5.854 13 Si 0.987 3.013 14 H -0.268 1.268 15 H -0.270 1.270 16 H -0.264 1.264 17 C -0.080 4.080 18 N -0.457 5.457 19 C 0.128 3.872 20 C -0.147 4.147 21 C -0.147 4.147 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.184 0.816 26 H 0.122 0.878 27 H 0.280 0.720 28 H 0.186 0.814 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 6.562 0.019 7.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.207 4.207 3 C -0.050 4.050 4 N -0.242 5.242 5 C 0.007 3.993 6 C -0.214 4.214 7 C -0.067 4.067 8 C -0.027 4.027 9 C -0.484 4.484 10 H 0.084 0.916 11 C -0.193 4.193 12 N -0.485 5.485 13 Si 0.810 3.190 14 H -0.194 1.194 15 H -0.195 1.195 16 H -0.189 1.189 17 C -0.204 4.204 18 N -0.144 5.144 19 C 0.026 3.974 20 C -0.205 4.205 21 C -0.205 4.205 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.201 0.799 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.202 0.798 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.870 7.413 0.027 7.646 hybrid contribution -0.241 -1.802 -0.022 1.818 sum -2.112 5.611 0.005 5.996 Atomic orbital electron populations 1.20517 0.87753 1.03314 1.02595 1.20765 0.98704 0.92698 1.08580 1.22681 0.87461 0.98439 0.96429 1.66400 1.08906 1.29566 1.19294 1.18686 0.86027 0.90188 1.04423 1.20414 0.94832 0.95210 1.10917 1.20901 0.91456 0.98614 0.95717 1.18454 0.89547 0.92516 1.02203 1.18925 0.93793 0.90258 1.45400 0.91638 1.26479 0.94035 1.05349 0.93464 1.69490 0.99224 1.38084 1.41730 0.85098 0.78662 0.76363 0.78906 1.19360 1.19509 1.18855 1.23071 1.00541 0.78879 1.17915 1.43802 1.01673 1.06635 1.62319 1.21392 0.88493 0.90116 0.97354 1.22053 0.99598 1.03138 0.95721 1.22055 0.99595 1.03140 0.95729 0.90883 0.91831 0.89715 0.79925 0.86003 0.90904 0.79798 0.89097 0.87991 0.93892 0.93013 0.93900 0.87991 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.07 10.04 71.24 0.71 -1.35 16 2 C -0.20 -7.26 5.90 -19.75 -0.12 -7.38 16 3 C 0.12 4.23 10.82 84.79 0.92 5.15 16 4 N -0.53 -23.18 10.30 -192.70 -1.98 -25.16 16 5 C 0.24 11.90 7.81 133.68 1.04 12.95 16 6 C -0.20 -10.70 6.35 -20.03 -0.13 -10.83 16 7 C -0.04 -1.80 9.89 22.56 0.22 -1.58 16 8 C -0.02 -1.23 6.10 -20.01 -0.12 -1.35 16 9 C -0.45 -25.47 9.42 23.29 0.22 -25.26 16 10 H 0.07 3.59 7.84 -2.91 -0.02 3.56 16 11 C 0.01 0.75 5.49 85.18 0.47 1.22 16 12 N -0.85 -45.28 10.34 21.80 0.23 -45.05 16 13 Si 0.99 40.43 29.56 68.60 2.03 42.45 16 14 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 15 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 16 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 17 C -0.08 -4.31 9.11 84.24 0.77 -3.55 16 18 N -0.46 -21.84 2.63 -495.95 -1.30 -23.14 16 19 C 0.13 4.77 3.52 44.99 0.16 4.93 16 20 C -0.15 -4.78 9.22 71.98 0.66 -4.12 16 21 C -0.15 -4.79 9.22 71.98 0.66 -4.12 16 22 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 24 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 25 H 0.18 4.87 8.06 -2.91 -0.02 4.85 16 26 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 27 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 28 H 0.19 10.16 5.68 -2.91 -0.02 10.14 16 29 H 0.09 3.28 7.97 -2.39 -0.02 3.26 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.42 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.83 7.87 -2.38 -0.02 1.81 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.05 1.83 7.87 -2.38 -0.02 1.81 16 Total: -1.00 -65.74 295.59 5.51 -60.23 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 1.07 Total: 25.97 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 5.48 Total: -35.30 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -3.06 Total: -93.36 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.45 kcal Total: -65.74 5.51 -60.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872849.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.296 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds