Wall clock time and date at job start Mon Mar 30 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47488 * 2 1 4 4 C 1.53005 * 109.47123 * 239.99414 * 2 1 3 5 5 C 1.50703 * 109.46931 * 120.00258 * 2 1 3 6 6 C 1.34058 * 126.94063 * 359.97438 * 5 2 1 7 7 O 1.34399 * 110.04449 * 179.75874 * 6 5 2 8 8 C 1.34517 * 110.91899 * 0.41949 * 7 6 5 9 9 C 1.40073 * 107.43801 * 359.59091 * 8 7 6 10 10 C 1.39706 * 120.31852 * 180.26748 * 9 8 7 11 11 C 1.38331 * 120.14271 * 359.95764 * 10 9 8 12 12 C 1.37906 * 120.57327 * 0.04011 * 11 10 9 13 13 C 1.40645 * 120.38501 * 359.97438 * 12 11 10 14 14 C 1.41072 * 120.27834 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99682 * 154.47955 * 14 13 12 16 16 C 1.39943 * 120.00222 * 334.48717 * 14 13 12 17 17 N 1.30857 * 120.00051 * 343.10586 * 16 14 13 18 18 Si 1.86796 * 120.00383 * 163.10335 * 16 14 13 19 19 H 1.48504 * 109.46985 * 60.00004 * 18 16 14 20 20 H 1.48500 * 109.47409 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47137 * 300.00385 * 18 16 14 22 22 H 1.09001 * 109.46702 * 300.00477 * 1 2 3 23 23 H 1.09000 * 109.46740 * 59.99785 * 1 2 3 24 24 H 1.08993 * 109.47580 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47365 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47306 * 299.99869 * 3 2 1 27 27 H 1.09001 * 109.47538 * 60.00035 * 3 2 1 28 28 H 1.08993 * 109.47381 * 300.00720 * 4 2 1 29 29 H 1.09000 * 109.46658 * 60.00751 * 4 2 1 30 30 H 1.08996 * 109.47259 * 180.02562 * 4 2 1 31 31 H 1.08002 * 124.97836 * 0.02562 * 6 5 2 32 32 H 1.08002 * 119.93237 * 179.97438 * 10 9 8 33 33 H 1.07995 * 119.71834 * 180.02562 * 11 10 9 34 34 H 1.08000 * 119.80665 * 179.97438 * 12 11 10 35 35 H 0.96992 * 120.00071 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 1.2906 -1.2685 2.1978 7 8 2.0875 -1.8144 3.1323 8 6 3.3841 -1.6310 2.8245 9 6 3.4328 -0.9313 1.6120 10 6 4.6626 -0.6008 1.0374 11 6 5.8417 -0.9625 1.6640 12 6 5.8186 -1.6517 2.8582 13 6 4.5936 -1.9965 3.4570 14 6 4.5726 -2.7010 4.6790 15 1 3.7207 -2.6151 5.3373 16 6 5.6557 -3.5111 5.0384 17 7 6.5233 -3.8834 4.1323 18 14 5.8629 -4.0611 6.8115 19 1 4.6736 -4.8466 7.2283 20 1 7.0790 -4.9052 6.9290 21 1 6.0005 -2.8693 7.6866 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6766 -1.7490 -1.2492 29 1 1.6768 -0.2075 -2.1392 30 1 3.1300 -0.7218 -1.2490 31 1 0.2109 -1.2815 2.2205 32 1 4.6929 -0.0615 0.1022 33 1 6.7885 -0.7031 1.2139 34 1 6.7466 -1.9282 3.3365 35 1 7.2737 -4.4452 4.3813 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260881437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:53 Heat of formation + Delta-G solvation = -1.120283 kcal Electronic energy + Delta-G solvation = -17445.086076 eV Core-core repulsion = 14794.376356 eV Total energy + Delta-G solvation = -2650.709720 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18522 -36.77135 -36.38870 -33.61446 -30.53693 -29.32443 -28.22427 -26.88832 -26.66719 -25.23321 -22.01068 -20.99478 -20.65055 -18.25911 -17.12191 -15.91191 -15.55027 -14.96388 -14.82271 -14.25316 -13.82089 -13.73526 -13.46889 -12.88687 -12.54757 -12.04239 -12.02401 -11.81501 -11.47436 -11.40157 -11.10482 -11.04524 -10.73356 -10.69603 -10.67908 -10.45749 -10.34720 -9.92583 -9.40061 -9.27736 -8.51242 -7.27710 -6.95041 -6.80171 -4.34450 2.31393 2.89989 3.04711 3.06432 3.09895 3.52925 3.90479 4.09911 4.60348 5.10467 5.13010 5.30523 5.54313 5.60318 5.73848 5.79368 5.90106 6.02639 6.07707 6.17381 6.21657 6.21829 6.36061 6.40497 6.61550 6.67032 6.69532 6.86770 6.99299 7.14669 7.24682 7.49969 7.71040 7.76625 8.04811 8.16050 8.25468 8.59739 8.75496 8.89054 10.12798 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.038384 B = 0.006542 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.293958 B = 4278.716692 C = 4749.534964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.010 3.990 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.186 4.186 6 C -0.024 4.024 7 O -0.192 6.192 8 C -0.033 4.033 9 C -0.089 4.089 10 C -0.214 4.214 11 C -0.097 4.097 12 C -0.177 4.177 13 C 0.133 3.867 14 C -0.453 4.453 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.789 5.789 18 Si 0.912 3.088 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.262 1.262 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.184 0.816 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 4.746 -4.934 9.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 C -0.193 4.193 4 C -0.193 4.193 5 C -0.187 4.187 6 C -0.090 4.090 7 O -0.093 6.093 8 C -0.079 4.079 9 C -0.090 4.090 10 C -0.233 4.233 11 C -0.115 4.115 12 C -0.197 4.197 13 C 0.130 3.870 14 C -0.482 4.482 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.413 5.413 18 Si 0.736 3.264 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.187 1.187 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.201 0.799 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.967 4.437 -4.716 8.806 hybrid contribution 0.110 -0.307 0.581 0.666 sum -5.857 4.130 -4.135 8.274 Atomic orbital electron populations 1.21910 0.95042 1.01586 1.01438 1.18765 0.94057 0.94319 0.91873 1.21831 1.01908 0.94891 1.00634 1.21831 1.01932 0.99829 0.95701 1.20832 0.92460 1.07091 0.98361 1.23354 0.95477 1.00181 0.90024 1.83771 1.15946 1.65005 1.44549 1.20075 0.82522 1.08266 0.97067 1.19321 0.92188 1.01670 0.95776 1.19681 0.90411 1.11402 1.01822 1.20583 0.95832 0.98946 0.96179 1.20934 0.97076 1.04313 0.97387 1.16613 0.86296 0.91370 0.92719 1.19486 1.02984 1.22784 1.02980 0.90176 1.25899 0.94627 0.94475 0.99336 1.69823 1.11142 1.25919 1.34456 0.86297 0.78554 0.79305 0.82223 1.18920 1.20210 1.18696 0.92649 0.92725 0.92631 0.92043 0.93301 0.92969 0.92933 0.93303 0.92034 0.79875 0.89128 0.88870 0.85574 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 7.39 37.16 0.27 -1.50 16 2 C 0.01 0.15 0.98 -155.66 -0.15 0.00 16 3 C -0.14 -1.98 8.40 37.15 0.31 -1.67 16 4 C -0.14 -2.02 8.40 37.16 0.31 -1.71 16 5 C -0.19 -3.66 4.86 -102.62 -0.50 -4.16 16 6 C -0.02 -0.47 11.00 29.26 0.32 -0.14 16 7 O -0.19 -4.64 10.57 4.86 0.05 -4.58 16 8 C -0.03 -0.86 7.15 -37.73 -0.27 -1.13 16 9 C -0.09 -2.10 6.16 -105.19 -0.65 -2.75 16 10 C -0.21 -4.90 9.31 -39.00 -0.36 -5.26 16 11 C -0.10 -2.30 10.00 -39.67 -0.40 -2.69 16 12 C -0.18 -4.64 8.67 -38.80 -0.34 -4.98 16 13 C 0.13 3.65 5.57 -106.75 -0.59 3.06 16 14 C -0.45 -12.33 9.04 -37.87 -0.34 -12.67 16 15 H 0.08 2.14 7.90 -52.49 -0.41 1.73 16 16 C 0.07 1.89 5.15 -17.33 -0.09 1.80 16 17 N -0.79 -20.33 10.96 55.55 0.61 -19.72 16 18 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 H 0.05 0.66 7.96 -51.93 -0.41 0.25 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.67 7.96 -51.93 -0.41 0.26 16 25 H 0.06 0.98 6.94 -51.93 -0.36 0.62 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.00 6.93 -51.93 -0.36 0.64 16 31 H 0.18 2.74 7.27 -52.49 -0.38 2.35 16 32 H 0.09 1.86 6.58 -52.49 -0.35 1.51 16 33 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.13 3.35 6.17 -52.49 -0.32 3.03 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 289.29 15.07 4.36 4.36 Total: -1.00 -28.52 289.29 -7.16 -35.68 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.68 Total: 4.35 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: -2.47 Total: -33.81 kcal Atomic # 7 Polarization: -20.33 SS G_CDS: 0.61 Total: -19.72 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.05 Total: -4.58 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.52 -7.16 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.563 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds