Wall clock time and date at job start Mon Mar 30 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47488 * 2 1 4 4 C 1.53005 * 109.47123 * 239.99414 * 2 1 3 5 5 C 1.50703 * 109.46931 * 120.00258 * 2 1 3 6 6 C 1.34058 * 126.94063 * 359.97438 * 5 2 1 7 7 O 1.34399 * 110.04449 * 179.75874 * 6 5 2 8 8 C 1.34517 * 110.91899 * 0.41949 * 7 6 5 9 9 C 1.40073 * 107.43801 * 359.59091 * 8 7 6 10 10 C 1.39706 * 120.31852 * 180.26748 * 9 8 7 11 11 C 1.38331 * 120.14271 * 359.95764 * 10 9 8 12 12 C 1.37906 * 120.57327 * 0.04011 * 11 10 9 13 13 C 1.40645 * 120.38501 * 359.97438 * 12 11 10 14 14 C 1.41072 * 120.27834 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99682 * 154.47955 * 14 13 12 16 16 C 1.39943 * 120.00222 * 334.48717 * 14 13 12 17 17 N 1.30857 * 120.00051 * 343.10586 * 16 14 13 18 18 Si 1.86796 * 120.00383 * 163.10335 * 16 14 13 19 19 H 1.48504 * 109.46985 * 60.00004 * 18 16 14 20 20 H 1.48500 * 109.47409 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47137 * 300.00385 * 18 16 14 22 22 H 1.09001 * 109.46702 * 300.00477 * 1 2 3 23 23 H 1.09000 * 109.46740 * 59.99785 * 1 2 3 24 24 H 1.08993 * 109.47580 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47365 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47306 * 299.99869 * 3 2 1 27 27 H 1.09001 * 109.47538 * 60.00035 * 3 2 1 28 28 H 1.08993 * 109.47381 * 300.00720 * 4 2 1 29 29 H 1.09000 * 109.46658 * 60.00751 * 4 2 1 30 30 H 1.08996 * 109.47259 * 180.02562 * 4 2 1 31 31 H 1.08002 * 124.97836 * 0.02562 * 6 5 2 32 32 H 1.08002 * 119.93237 * 179.97438 * 10 9 8 33 33 H 1.07995 * 119.71834 * 180.02562 * 11 10 9 34 34 H 1.08000 * 119.80665 * 179.97438 * 12 11 10 35 35 H 0.96992 * 120.00071 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 1.2906 -1.2685 2.1978 7 8 2.0875 -1.8144 3.1323 8 6 3.3841 -1.6310 2.8245 9 6 3.4328 -0.9313 1.6120 10 6 4.6626 -0.6008 1.0374 11 6 5.8417 -0.9625 1.6640 12 6 5.8186 -1.6517 2.8582 13 6 4.5936 -1.9965 3.4570 14 6 4.5726 -2.7010 4.6790 15 1 3.7207 -2.6151 5.3373 16 6 5.6557 -3.5111 5.0384 17 7 6.5233 -3.8834 4.1323 18 14 5.8629 -4.0611 6.8115 19 1 4.6736 -4.8466 7.2283 20 1 7.0790 -4.9052 6.9290 21 1 6.0005 -2.8693 7.6866 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6766 -1.7490 -1.2492 29 1 1.6768 -0.2075 -2.1392 30 1 3.1300 -0.7218 -1.2490 31 1 0.2109 -1.2815 2.2205 32 1 4.6929 -0.0615 0.1022 33 1 6.7885 -0.7031 1.2139 34 1 6.7466 -1.9282 3.3365 35 1 7.2737 -4.4452 4.3813 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260881437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:53 Heat of formation + Delta-G solvation = -15.525708 kcal Electronic energy + Delta-G solvation = -17445.710742 eV Core-core repulsion = 14794.376356 eV Total energy + Delta-G solvation = -2651.334386 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.93307 -38.28580 -38.04799 -35.49998 -32.28289 -31.18230 -29.82290 -28.03018 -27.88300 -27.14970 -23.69507 -22.72283 -22.39531 -19.89356 -18.89457 -17.65573 -17.27634 -16.71924 -16.58217 -15.89159 -15.22418 -14.89649 -14.86020 -14.57556 -14.37131 -13.61249 -13.27232 -13.14531 -13.03509 -12.94185 -12.66688 -12.53212 -12.44107 -12.21074 -12.09743 -11.84038 -11.73219 -11.61105 -11.14383 -11.13116 -10.23999 -9.19413 -8.76301 -8.68632 -6.35652 0.54388 0.99856 1.34913 1.40611 1.48376 1.81286 2.18291 2.42255 2.70407 3.58344 3.83610 3.85651 4.08272 4.21387 4.40878 4.55622 4.61157 4.73132 4.84755 4.91561 4.95962 4.96545 5.03831 5.08670 5.09334 5.21381 5.25288 5.28001 5.43467 5.52913 5.59489 5.78985 5.82933 5.86305 6.12266 6.24958 6.38147 6.65359 6.79019 6.97408 8.27031 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.038384 B = 0.006542 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.293958 B = 4278.716692 C = 4749.534964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.008 3.992 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.183 4.183 6 C -0.024 4.024 7 O -0.217 6.217 8 C -0.071 4.071 9 C -0.102 4.102 10 C -0.206 4.206 11 C -0.105 4.105 12 C -0.198 4.198 13 C 0.099 3.901 14 C -0.495 4.495 15 H 0.068 0.932 16 C 0.037 3.963 17 N -0.819 5.819 18 Si 0.986 3.014 19 H -0.262 1.262 20 H -0.260 1.260 21 H -0.259 1.259 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.232 0.768 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 5.570 -6.079 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.008 3.992 3 C -0.191 4.191 4 C -0.192 4.192 5 C -0.185 4.185 6 C -0.088 4.088 7 O -0.119 6.119 8 C -0.117 4.117 9 C -0.103 4.103 10 C -0.225 4.225 11 C -0.123 4.123 12 C -0.218 4.218 13 C 0.097 3.903 14 C -0.524 4.524 15 H 0.087 0.913 16 C -0.179 4.179 17 N -0.444 5.444 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.184 1.184 21 H -0.183 1.183 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.248 0.752 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.436 5.274 -5.890 10.853 hybrid contribution 0.482 -0.487 0.783 1.040 sum -6.954 4.787 -5.106 9.866 Atomic orbital electron populations 1.21897 0.92199 1.02459 1.03100 1.18954 0.96326 0.94156 0.89765 1.21821 1.00664 0.94570 1.02039 1.21827 1.00631 0.99936 0.96777 1.21350 0.90271 1.06825 1.00006 1.24322 0.97089 0.98682 0.88746 1.83741 1.15628 1.66170 1.46372 1.20309 0.83169 1.09819 0.98439 1.19842 0.94479 1.00888 0.95059 1.20044 0.89975 1.10218 1.02305 1.20901 0.97587 0.98337 0.95478 1.20935 0.96365 1.05774 0.98715 1.17002 0.87563 0.92246 0.93525 1.19641 1.04109 1.24921 1.03689 0.91336 1.26750 0.93611 0.93798 1.03733 1.69859 1.11702 1.26383 1.36476 0.85200 0.78986 0.78987 0.76233 1.18646 1.18420 1.18327 0.92005 0.90182 0.92180 0.94011 0.90178 0.93310 0.93540 0.90119 0.94085 0.75236 0.86399 0.86094 0.86840 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 7.39 71.98 0.53 -2.33 16 2 C 0.01 0.23 0.98 -52.93 -0.05 0.17 16 3 C -0.13 -3.50 8.40 71.98 0.60 -2.89 16 4 C -0.13 -3.60 8.40 71.98 0.60 -3.00 16 5 C -0.18 -6.96 4.86 -18.57 -0.09 -7.05 16 6 C -0.02 -0.89 11.00 66.87 0.74 -0.16 16 7 O -0.22 -10.74 10.57 -5.51 -0.06 -10.80 16 8 C -0.07 -3.86 7.15 23.47 0.17 -3.69 16 9 C -0.10 -4.85 6.16 -20.23 -0.12 -4.97 16 10 C -0.21 -9.43 9.31 22.65 0.21 -9.21 16 11 C -0.10 -5.04 10.00 22.21 0.22 -4.81 16 12 C -0.20 -10.85 8.67 22.78 0.20 -10.65 16 13 C 0.10 5.75 5.57 -21.24 -0.12 5.63 16 14 C -0.49 -28.41 9.04 23.38 0.21 -28.20 16 15 H 0.07 3.91 7.90 -2.91 -0.02 3.89 16 16 C 0.04 1.90 5.15 85.25 0.44 2.34 16 17 N -0.82 -43.67 10.96 21.83 0.24 -43.43 16 18 Si 0.99 39.28 29.59 68.60 2.03 41.31 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H 0.06 1.20 7.96 -2.39 -0.02 1.18 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.19 7.96 -2.39 -0.02 1.17 16 25 H 0.04 1.24 6.94 -2.38 -0.02 1.22 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.25 6.93 -2.39 -0.02 1.23 16 31 H 0.23 6.14 7.27 -2.91 -0.02 6.12 16 32 H 0.12 4.66 6.58 -2.91 -0.02 4.65 16 33 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 34 H 0.11 6.36 6.17 -2.91 -0.02 6.35 16 35 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 Total: -1.00 -65.40 289.29 6.83 -58.57 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.08 Total: 23.16 kcal Atomic # 6 Polarization: -72.36 SS G_CDS: 3.54 Total: -68.82 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.24 Total: -43.43 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.06 Total: -10.80 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -65.40 6.83 -58.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.047 kcal (2) G-P(sol) polarization free energy of solvation -65.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds