Wall clock time and date at job start Mon Mar 30 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.37865 * 126.23013 * 333.31437 * 3 2 1 5 5 C 1.39961 * 107.10316 * 180.27735 * 4 3 2 6 6 C 1.35363 * 107.85694 * 359.73418 * 5 4 3 7 7 N 1.35764 * 108.84826 * 0.02562 * 6 5 4 8 8 C 1.46508 * 125.67769 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46675 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46887 * 60.00937 * 8 7 6 11 11 C 1.53002 * 109.47393 * 300.00060 * 10 8 7 12 12 C 1.53002 * 109.46782 * 300.00247 * 11 10 8 13 13 C 1.52999 * 109.47358 * 59.99732 * 12 11 10 14 14 C 1.53002 * 109.47159 * 300.00769 * 8 7 6 15 15 H 1.08997 * 109.46811 * 179.97438 * 14 8 7 16 16 C 1.50692 * 109.47492 * 300.00120 * 14 8 7 17 17 H 1.08007 * 119.99841 * 5.38323 * 16 14 8 18 18 C 1.37876 * 120.00379 * 185.38407 * 16 14 8 19 19 N 1.31511 * 120.00526 * 185.18717 * 18 16 14 20 20 Si 1.86804 * 119.99600 * 5.19181 * 18 16 14 21 21 H 1.48503 * 109.46997 * 269.99580 * 20 18 16 22 22 H 1.48499 * 109.46949 * 149.99853 * 20 18 16 23 23 H 1.48493 * 109.47201 * 29.99864 * 20 18 16 24 24 H 1.08001 * 126.44283 * 0.02562 * 4 3 2 25 25 H 1.07994 * 126.07155 * 179.71763 * 5 4 3 26 26 H 1.07997 * 125.57670 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47057 * 60.00215 * 10 8 7 28 28 H 1.08997 * 109.47183 * 179.97438 * 10 8 7 29 29 H 1.08997 * 109.47205 * 59.99709 * 11 10 8 30 30 H 1.08997 * 109.47076 * 179.97438 * 11 10 8 31 31 H 1.09001 * 109.47228 * 180.02562 * 12 11 10 32 32 H 1.08997 * 109.46811 * 299.99703 * 12 11 10 33 33 H 1.09000 * 109.47057 * 179.97438 * 13 12 11 34 34 H 1.08997 * 109.47183 * 60.00199 * 13 12 11 35 35 H 0.96999 * 119.99689 * 354.99484 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3833 -0.9926 0.4994 5 6 4.7054 -0.5794 0.2993 6 6 4.6749 0.6287 -0.3105 7 7 3.3805 0.9913 -0.5009 8 6 2.9248 2.2337 -1.1298 9 1 1.8351 2.2541 -1.1461 10 6 3.4581 2.3057 -2.5620 11 6 4.9877 2.2770 -2.5388 12 6 5.5081 3.4737 -1.7400 13 6 4.9748 3.4017 -0.3078 14 6 3.4452 3.4304 -0.3310 15 1 3.1065 4.3546 -0.7991 16 6 2.9200 3.3594 1.0797 17 1 2.3515 2.4994 1.4016 18 6 3.1651 4.3924 1.9594 19 7 2.7961 4.2866 3.2172 20 14 4.0213 5.9424 1.3645 21 1 5.4898 5.7889 1.5236 22 1 3.5554 7.1034 2.1646 23 1 3.6994 6.1671 -0.0676 24 1 3.0620 -1.9141 0.9621 25 1 5.5924 -1.1270 0.5814 26 1 5.5389 1.2096 -0.5977 27 1 3.0874 1.4531 -3.1311 28 1 3.1188 3.2297 -3.0301 29 1 5.3267 1.3528 -2.0709 30 1 5.3676 2.3278 -3.5592 31 1 6.5978 3.4536 -1.7238 32 1 5.1690 4.3979 -2.2079 33 1 5.3459 4.2540 0.2614 34 1 5.3138 2.4775 0.1602 35 1 2.2876 3.5142 3.5101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:58 Heat of formation + Delta-G solvation = 83.262458 kcal Electronic energy + Delta-G solvation = -18201.304599 eV Core-core repulsion = 15586.546741 eV Total energy + Delta-G solvation = -2614.757859 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36922 -37.68683 -35.94986 -33.07318 -32.13306 -30.33665 -29.09067 -28.60645 -24.52672 -22.70909 -21.80018 -21.16305 -20.19230 -19.54025 -17.61222 -17.01734 -15.26732 -14.97533 -14.75100 -14.19464 -13.66909 -13.63205 -13.34126 -13.06751 -12.70612 -12.57025 -12.29559 -11.97292 -11.87715 -11.76767 -11.61613 -11.48558 -11.28447 -10.99361 -10.55883 -10.11426 -9.86268 -9.63047 -9.45406 -8.68914 -8.50978 -8.18440 -7.64992 -6.47722 -4.15087 1.94892 2.74959 3.21556 3.29122 3.35225 3.50593 3.60117 3.95903 4.41206 4.42912 4.99395 5.05999 5.13939 5.25313 5.43211 5.51065 5.66797 5.79210 5.82067 5.88162 5.93343 5.99360 6.01664 6.20159 6.26941 6.39945 6.48519 6.53344 6.58633 6.76280 6.93569 7.20486 7.24112 7.55209 7.68278 7.89665 7.95310 8.33260 8.82325 9.56559 10.91754 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.011269 C = 0.008962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.184939 B = 2484.193997 C = 3123.549770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.294 3.706 3 C 0.045 3.955 4 C -0.128 4.128 5 C -0.221 4.221 6 C 0.031 3.969 7 N -0.376 5.376 8 C 0.140 3.860 9 H 0.085 0.915 10 C -0.128 4.128 11 C -0.138 4.138 12 C -0.128 4.128 13 C -0.144 4.144 14 C 0.010 3.990 15 H 0.045 0.955 16 C -0.591 4.591 17 H 0.058 0.942 18 C 0.030 3.970 19 N -0.909 5.909 20 Si 1.055 2.945 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.280 1.280 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.185 0.815 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -5.230 -10.805 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.021 4.021 3 C -0.069 4.069 4 C -0.157 4.157 5 C -0.245 4.245 6 C -0.106 4.106 7 N -0.047 5.047 8 C 0.039 3.961 9 H 0.103 0.897 10 C -0.166 4.166 11 C -0.175 4.175 12 C -0.166 4.166 13 C -0.182 4.182 14 C -0.009 4.009 15 H 0.063 0.937 16 C -0.629 4.629 17 H 0.076 0.924 18 C -0.175 4.175 19 N -0.543 5.543 20 Si 0.885 3.115 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.206 1.206 24 H 0.157 0.843 25 H 0.157 0.843 26 H 0.202 0.798 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.863 -3.418 -10.469 12.476 hybrid contribution -0.245 -1.318 -0.312 1.377 sum 5.617 -4.735 -10.782 13.047 Atomic orbital electron populations 1.81185 1.11549 1.07686 1.10619 1.24462 0.91184 0.93539 0.92875 1.15661 0.83035 0.94225 1.13962 1.21040 0.92338 0.98467 1.03830 1.20699 0.96793 0.97824 1.09194 1.22361 0.87111 0.97197 1.03919 1.44096 1.05072 1.14087 1.41427 1.21726 0.99289 0.83398 0.91704 0.89666 1.21905 0.96841 1.02366 0.95524 1.21952 0.95123 1.00223 1.00202 1.21707 0.99532 0.97904 0.97442 1.22418 0.98727 1.02890 0.94126 1.19487 0.92106 0.92188 0.97099 0.93744 1.21949 1.38528 1.07078 0.95360 0.92394 1.25726 0.96714 1.01305 0.93725 1.70779 1.35480 1.32806 1.15250 0.83847 0.76255 0.76013 0.75408 1.21017 1.21801 1.20572 0.84349 0.84339 0.79810 0.92088 0.90285 0.90122 0.92285 0.92557 0.92379 0.92473 0.90409 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.94 18.54 41.84 0.78 -8.17 16 2 C 0.29 5.76 14.93 -22.47 -0.34 5.42 16 3 C 0.05 0.83 6.63 -83.50 -0.55 0.28 16 4 C -0.13 -2.05 10.85 -39.07 -0.42 -2.47 16 5 C -0.22 -3.33 10.81 -39.96 -0.43 -3.76 16 6 C 0.03 0.50 7.12 -16.84 -0.12 0.38 16 7 N -0.38 -6.77 2.10 -106.94 -0.22 -6.99 16 8 C 0.14 2.58 2.76 -67.93 -0.19 2.39 16 9 H 0.09 1.69 7.32 -51.93 -0.38 1.31 16 10 C -0.13 -1.84 5.63 -26.73 -0.15 -1.99 16 11 C -0.14 -1.78 5.57 -26.73 -0.15 -1.93 16 12 C -0.13 -1.85 5.71 -26.73 -0.15 -2.00 16 13 C -0.14 -2.70 4.46 -26.73 -0.12 -2.82 16 14 C 0.01 0.22 1.50 -91.77 -0.14 0.08 16 15 H 0.04 0.97 6.64 -51.93 -0.35 0.62 16 16 C -0.59 -15.65 8.57 -34.44 -0.30 -15.94 16 17 H 0.06 1.71 7.70 -52.48 -0.40 1.31 16 18 C 0.03 0.84 5.43 -17.82 -0.10 0.75 16 19 N -0.91 -27.70 13.70 55.43 0.76 -26.94 16 20 Si 1.05 24.54 25.31 -169.99 -4.30 20.24 16 21 H -0.28 -6.23 6.78 56.52 0.38 -5.85 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -5.95 6.36 56.52 0.36 -5.59 16 24 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 25 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 26 H 0.19 2.63 3.80 -52.49 -0.20 2.43 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.02 4.24 -51.93 -0.22 0.80 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.16 4.35 -51.93 -0.23 0.93 16 34 H 0.08 1.45 4.24 -51.93 -0.22 1.23 16 35 H 0.27 8.29 8.72 -40.82 -0.36 7.93 16 LS Contribution 273.70 15.07 4.12 4.12 Total: -1.00 -29.91 273.70 -6.19 -36.10 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.17 Total: 3.25 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -3.15 Total: -21.61 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.31 Total: -42.10 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.30 Total: 20.24 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.91 -6.19 -36.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.361 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds