Wall clock time and date at job start Mon Mar 30 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.37865 * 126.23013 * 333.31437 * 3 2 1 5 5 C 1.39961 * 107.10316 * 180.27735 * 4 3 2 6 6 C 1.35363 * 107.85694 * 359.73418 * 5 4 3 7 7 N 1.35764 * 108.84826 * 0.02562 * 6 5 4 8 8 C 1.46508 * 125.67769 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46675 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46887 * 60.00937 * 8 7 6 11 11 C 1.53002 * 109.47393 * 300.00060 * 10 8 7 12 12 C 1.53002 * 109.46782 * 300.00247 * 11 10 8 13 13 C 1.52999 * 109.47358 * 59.99732 * 12 11 10 14 14 C 1.53002 * 109.47159 * 300.00769 * 8 7 6 15 15 H 1.08997 * 109.46811 * 179.97438 * 14 8 7 16 16 C 1.50692 * 109.47492 * 300.00120 * 14 8 7 17 17 H 1.08007 * 119.99841 * 5.38323 * 16 14 8 18 18 C 1.37876 * 120.00379 * 185.38407 * 16 14 8 19 19 N 1.31511 * 120.00526 * 185.18717 * 18 16 14 20 20 Si 1.86804 * 119.99600 * 5.19181 * 18 16 14 21 21 H 1.48503 * 109.46997 * 269.99580 * 20 18 16 22 22 H 1.48499 * 109.46949 * 149.99853 * 20 18 16 23 23 H 1.48493 * 109.47201 * 29.99864 * 20 18 16 24 24 H 1.08001 * 126.44283 * 0.02562 * 4 3 2 25 25 H 1.07994 * 126.07155 * 179.71763 * 5 4 3 26 26 H 1.07997 * 125.57670 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47057 * 60.00215 * 10 8 7 28 28 H 1.08997 * 109.47183 * 179.97438 * 10 8 7 29 29 H 1.08997 * 109.47205 * 59.99709 * 11 10 8 30 30 H 1.08997 * 109.47076 * 179.97438 * 11 10 8 31 31 H 1.09001 * 109.47228 * 180.02562 * 12 11 10 32 32 H 1.08997 * 109.46811 * 299.99703 * 12 11 10 33 33 H 1.09000 * 109.47057 * 179.97438 * 13 12 11 34 34 H 1.08997 * 109.47183 * 60.00199 * 13 12 11 35 35 H 0.96999 * 119.99689 * 354.99484 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3833 -0.9926 0.4994 5 6 4.7054 -0.5794 0.2993 6 6 4.6749 0.6287 -0.3105 7 7 3.3805 0.9913 -0.5009 8 6 2.9248 2.2337 -1.1298 9 1 1.8351 2.2541 -1.1461 10 6 3.4581 2.3057 -2.5620 11 6 4.9877 2.2770 -2.5388 12 6 5.5081 3.4737 -1.7400 13 6 4.9748 3.4017 -0.3078 14 6 3.4452 3.4304 -0.3310 15 1 3.1065 4.3546 -0.7991 16 6 2.9200 3.3594 1.0797 17 1 2.3515 2.4994 1.4016 18 6 3.1651 4.3924 1.9594 19 7 2.7961 4.2866 3.2172 20 14 4.0213 5.9424 1.3645 21 1 5.4898 5.7889 1.5236 22 1 3.5554 7.1034 2.1646 23 1 3.6994 6.1671 -0.0676 24 1 3.0620 -1.9141 0.9621 25 1 5.5924 -1.1270 0.5814 26 1 5.5389 1.2096 -0.5977 27 1 3.0874 1.4531 -3.1311 28 1 3.1188 3.2297 -3.0301 29 1 5.3267 1.3528 -2.0709 30 1 5.3676 2.3278 -3.5592 31 1 6.5978 3.4536 -1.7238 32 1 5.1690 4.3979 -2.2079 33 1 5.3459 4.2540 0.2614 34 1 5.3138 2.4775 0.1602 35 1 2.2876 3.5142 3.5101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260900495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:58 Heat of formation + Delta-G solvation = 65.858961 kcal Electronic energy + Delta-G solvation = -18202.059272 eV Core-core repulsion = 15586.546741 eV Total energy + Delta-G solvation = -2615.512531 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.69700 -39.03549 -37.51837 -35.01696 -33.43709 -31.93673 -30.44382 -29.92199 -26.29188 -24.00710 -23.19871 -22.58893 -21.65506 -20.77522 -19.65376 -18.41336 -16.78581 -16.33187 -16.10470 -15.59155 -15.28717 -14.99828 -14.85974 -14.47407 -14.33709 -14.12727 -13.83003 -13.35547 -13.14042 -13.11937 -13.00370 -12.96865 -12.71177 -12.54045 -12.04427 -11.71324 -11.41820 -11.07125 -10.83754 -10.57356 -10.54462 -9.51489 -8.98440 -8.69715 -6.37106 0.53137 1.26249 1.41540 1.52291 1.67132 1.94710 2.20606 2.48279 2.49113 2.98950 3.13147 3.68975 3.88573 3.97372 4.20705 4.31070 4.39391 4.47968 4.58419 4.64515 4.67435 4.72925 4.86404 4.96105 5.14870 5.21742 5.28807 5.31292 5.31811 5.40235 5.51142 5.71239 5.95937 5.99888 6.04500 6.18494 6.32727 6.49974 6.56009 7.43578 8.67050 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.011269 C = 0.008962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.184939 B = 2484.193997 C = 3123.549770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.301 3.699 3 C 0.001 3.999 4 C -0.118 4.118 5 C -0.218 4.218 6 C 0.030 3.970 7 N -0.386 5.386 8 C 0.140 3.860 9 H 0.054 0.946 10 C -0.122 4.122 11 C -0.132 4.132 12 C -0.122 4.122 13 C -0.143 4.143 14 C 0.007 3.993 15 H 0.043 0.957 16 C -0.579 4.579 17 H 0.010 0.990 18 C -0.028 4.028 19 N -0.950 5.950 20 Si 1.093 2.907 21 H -0.258 1.258 22 H -0.304 1.304 23 H -0.245 1.245 24 H 0.161 0.839 25 H 0.174 0.826 26 H 0.208 0.792 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.435 -5.243 -13.459 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.012 4.012 3 C -0.112 4.112 4 C -0.147 4.147 5 C -0.242 4.242 6 C -0.106 4.106 7 N -0.058 5.058 8 C 0.038 3.962 9 H 0.072 0.928 10 C -0.160 4.160 11 C -0.169 4.169 12 C -0.159 4.159 13 C -0.180 4.180 14 C -0.012 4.012 15 H 0.061 0.939 16 C -0.617 4.617 17 H 0.029 0.971 18 C -0.224 4.224 19 N -0.588 5.588 20 Si 0.916 3.084 21 H -0.183 1.183 22 H -0.232 1.232 23 H -0.169 1.169 24 H 0.178 0.822 25 H 0.191 0.809 26 H 0.224 0.776 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.110 -3.468 -13.155 16.373 hybrid contribution -1.291 -1.418 0.550 1.995 sum 7.819 -4.886 -12.605 15.617 Atomic orbital electron populations 1.81154 1.12480 1.08863 1.12256 1.24854 0.91728 0.92641 0.91979 1.15982 0.82588 0.95929 1.16675 1.21490 0.92660 0.98489 1.02088 1.21164 0.97353 0.97573 1.08061 1.22915 0.86805 0.97720 1.03192 1.44154 1.05758 1.13864 1.42044 1.21599 0.97783 0.82721 0.94093 0.92756 1.21902 0.98357 1.03470 0.92237 1.21948 0.93329 0.99653 1.01965 1.21672 1.01260 0.98936 0.94026 1.22291 0.95966 1.02244 0.97508 1.19445 0.94426 0.93563 0.93792 0.93861 1.22163 1.36523 1.04690 0.98314 0.97143 1.27230 0.97281 1.04733 0.93181 1.70942 1.38189 1.32376 1.17258 0.83419 0.76723 0.71652 0.76597 1.18331 1.23202 1.16947 0.82176 0.80860 0.77620 0.90972 0.89217 0.89715 0.88943 0.89557 0.91746 0.93839 0.90597 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.42 18.54 19.00 0.35 -20.07 16 2 C 0.30 12.34 14.93 88.33 1.32 13.66 16 3 C 0.00 0.05 6.63 39.40 0.26 0.31 16 4 C -0.12 -3.62 10.85 22.60 0.25 -3.37 16 5 C -0.22 -5.91 10.81 22.02 0.24 -5.67 16 6 C 0.03 0.90 7.12 83.42 0.59 1.49 16 7 N -0.39 -13.59 2.10 -492.26 -1.03 -14.62 16 8 C 0.14 5.05 2.76 44.99 0.12 5.18 16 9 H 0.05 2.24 7.32 -2.39 -0.02 2.22 16 10 C -0.12 -3.11 5.63 30.59 0.17 -2.94 16 11 C -0.13 -2.71 5.57 30.60 0.17 -2.54 16 12 C -0.12 -2.86 5.71 30.59 0.17 -2.68 16 13 C -0.14 -4.90 4.46 30.59 0.14 -4.76 16 14 C 0.01 0.29 1.50 -11.54 -0.02 0.27 16 15 H 0.04 1.81 6.64 -2.39 -0.02 1.79 16 16 C -0.58 -31.55 8.57 25.60 0.22 -31.33 16 17 H 0.01 0.64 7.70 -2.91 -0.02 0.62 16 18 C -0.03 -1.62 5.43 84.65 0.46 -1.16 16 19 N -0.95 -60.62 13.70 21.45 0.29 -60.33 16 20 Si 1.09 48.85 25.31 68.60 1.74 50.59 16 21 H -0.26 -10.44 6.78 99.48 0.67 -9.76 16 22 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.25 -9.50 6.36 99.48 0.63 -8.86 16 24 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 25 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 26 H 0.21 5.02 3.80 -2.91 -0.01 5.01 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.08 1.69 4.24 -2.39 -0.01 1.68 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.61 4.35 -2.39 -0.01 1.60 16 34 H 0.08 2.60 4.24 -2.39 -0.01 2.59 16 35 H 0.25 16.23 8.72 -92.71 -0.81 15.42 16 Total: -1.00 -69.90 273.70 6.41 -63.49 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.96 Total: 14.48 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 4.10 Total: -33.53 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -0.39 Total: -95.02 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.74 Total: 50.59 kcal Total: -69.90 6.41 -63.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.349 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds