Wall clock time and date at job start Mon Mar 30 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32381 * 120.49239 * 2 1 4 4 C 1.31770 * 120.77311 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.09110 * 179.97438 * 4 3 2 6 6 C 1.52992 * 117.49903 * 8.74647 * 5 4 3 7 7 C 1.52991 * 117.50019 * 300.08410 * 5 4 3 8 8 N 1.31794 * 121.81850 * 0.26862 * 4 3 2 9 9 C 1.32428 * 120.79678 * 359.44223 * 8 4 3 10 10 C 1.38454 * 118.99083 * 0.55071 * 9 8 4 11 11 C 1.51061 * 109.86516 * 179.69967 * 10 9 8 12 12 H 1.09002 * 110.30758 * 101.88972 * 11 10 9 13 13 C 1.50702 * 110.30284 * 224.04752 * 11 10 9 14 14 H 1.08000 * 120.00419 * 35.14743 * 13 11 10 15 15 C 1.37882 * 119.99851 * 215.13660 * 13 11 10 16 16 N 1.31513 * 119.99721 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 119.99998 * 359.97438 * 15 13 11 18 18 H 1.48497 * 109.47440 * 85.51590 * 17 15 13 19 19 H 1.48502 * 109.47191 * 205.51666 * 17 15 13 20 20 H 1.48504 * 109.47121 * 325.51946 * 17 15 13 21 21 C 1.54416 * 105.15497 * 342.96725 * 11 10 9 22 22 C 1.51166 * 131.30075 * 180.20294 * 9 8 4 23 23 H 1.08993 * 109.47151 * 89.99252 * 1 2 3 24 24 H 1.08999 * 109.47541 * 210.00495 * 1 2 3 25 25 H 1.09008 * 109.46440 * 330.00157 * 1 2 3 26 26 H 1.09003 * 115.54864 * 154.41517 * 5 4 3 27 27 H 1.09004 * 117.50156 * 0.02562 * 6 5 4 28 28 H 1.09000 * 117.49986 * 145.02023 * 6 5 4 29 29 H 1.08997 * 117.50470 * 214.97847 * 7 5 4 30 30 H 1.09005 * 117.50096 * 359.97438 * 7 5 4 31 31 H 0.97004 * 119.99248 * 180.02562 * 16 15 13 32 32 H 1.08997 * 110.81097 * 267.89443 * 21 11 10 33 33 H 1.09001 * 110.98082 * 144.44793 * 21 11 10 34 34 H 1.08996 * 110.30107 * 316.32732 * 22 9 8 35 35 H 1.08996 * 110.29954 * 78.37403 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1787 1.1407 0.0000 4 6 3.4964 1.1472 0.0005 5 6 4.2227 2.4677 -0.0001 6 6 3.3878 3.7332 0.2051 7 6 3.9676 3.4137 -1.1751 8 7 4.1968 0.0307 -0.0042 9 6 3.5935 -1.1481 0.0014 10 6 2.2097 -1.1938 0.0007 11 6 1.7435 -2.6307 0.0002 12 1 1.4259 -2.9256 1.0004 13 6 0.6163 -2.8144 -0.9830 14 1 0.6086 -2.2546 -1.9066 15 6 -0.4052 -3.6974 -0.7036 16 7 -1.3891 -3.8573 -1.5615 17 14 -0.3915 -4.6664 0.8933 18 1 -1.0067 -3.8519 1.9719 19 1 -1.1660 -5.9212 0.7175 20 1 1.0092 -4.9964 1.2600 21 6 2.9746 -3.4544 -0.4359 22 6 4.1499 -2.5537 0.0020 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3632 0.8901 0.5139 26 1 5.2263 2.4524 0.4250 27 1 2.3132 3.6107 0.3410 28 1 3.8422 4.5507 0.7648 29 1 4.8031 4.0212 -1.5228 30 1 3.2747 3.0809 -1.9480 31 1 -2.1079 -4.4782 -1.3647 32 1 2.9801 -3.6003 -1.5160 33 1 3.0068 -4.4125 0.0829 34 1 4.9732 -2.6348 -0.7076 35 1 4.4853 -2.8271 1.0024 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:28 Heat of formation + Delta-G solvation = 59.618924 kcal Electronic energy + Delta-G solvation = -17440.020710 eV Core-core repulsion = 14824.237590 eV Total energy + Delta-G solvation = -2615.783119 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.87365 -37.50753 -35.73057 -33.96807 -32.34988 -29.97213 -28.57429 -27.32571 -24.59102 -23.31975 -22.28364 -21.48549 -20.05485 -19.51293 -17.42726 -16.96859 -16.02054 -14.87996 -14.61952 -14.54970 -13.79322 -13.38421 -13.28258 -12.48239 -12.40253 -12.21695 -12.03283 -12.00314 -11.51261 -11.41884 -11.25293 -11.05245 -10.71523 -10.59794 -10.36433 -10.23509 -10.03549 -9.69499 -9.57966 -9.45882 -8.69011 -8.52696 -8.04396 -6.20706 -4.20607 1.57140 1.69847 3.17940 3.27351 3.28567 3.81330 4.04387 4.28560 4.42563 4.55218 4.98173 5.01445 5.12860 5.17655 5.22799 5.45553 5.63392 5.70005 5.71748 5.77883 5.86982 6.13213 6.16334 6.21798 6.25390 6.32741 6.40175 6.47062 6.58248 6.71604 6.81698 6.89424 7.07658 7.17034 7.54755 7.71843 8.37749 8.73776 8.82740 9.39618 10.91711 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.007185 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.758700 B = 3895.868886 C = 4386.779337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.190 3.810 3 N -0.523 5.523 4 C 0.322 3.678 5 C -0.089 4.089 6 C -0.157 4.157 7 C -0.160 4.160 8 N -0.522 5.522 9 C 0.145 3.855 10 C -0.155 4.155 11 C 0.053 3.947 12 H 0.053 0.947 13 C -0.504 4.504 14 H 0.075 0.925 15 C 0.076 3.924 16 N -0.893 5.893 17 Si 0.870 3.130 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.117 4.117 22 C -0.070 4.070 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.266 0.734 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 7.794 4.225 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 N -0.239 5.239 4 C 0.055 3.945 5 C -0.109 4.109 6 C -0.194 4.194 7 C -0.199 4.199 8 N -0.236 5.236 9 C 0.000 4.000 10 C -0.159 4.159 11 C 0.033 3.967 12 H 0.071 0.929 13 C -0.542 4.542 14 H 0.093 0.907 15 C -0.126 4.126 16 N -0.530 5.530 17 Si 0.698 3.302 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.155 4.155 22 C -0.108 4.108 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.354 8.533 4.177 12.651 hybrid contribution -0.425 -1.412 0.746 1.652 sum 7.929 7.121 4.923 11.740 Atomic orbital electron populations 1.20649 0.87503 1.02565 1.03869 1.21255 0.97595 0.86577 0.90020 1.67909 1.09207 1.30437 1.16314 1.21700 0.86380 0.92149 0.94301 1.20454 0.99332 0.85641 1.05440 1.22987 1.01063 0.96516 0.98871 1.22952 1.03281 1.01658 0.91984 1.67220 1.42546 0.97778 1.16082 1.22245 0.92240 0.93595 0.91965 1.22513 0.95400 0.99236 0.98776 1.18644 0.95015 0.85268 0.97733 0.92914 1.20755 1.04029 1.24688 1.04703 0.90656 1.25023 0.95026 0.96156 0.96425 1.69877 1.11030 1.36387 1.35670 0.86960 0.78653 0.80185 0.84440 1.20024 1.21298 1.18903 1.22714 0.93286 0.97475 1.02035 1.21075 0.99526 0.88119 1.02101 0.89690 0.89210 0.92209 0.86040 0.87238 0.88667 0.88409 0.88661 0.92412 0.90506 0.91418 0.90517 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.12 36.01 0.33 -1.39 16 2 C 0.19 3.99 6.81 -82.25 -0.56 3.43 16 3 N -0.52 -10.40 9.29 -7.00 -0.07 -10.47 16 4 C 0.32 6.13 7.31 -157.21 -1.15 4.98 16 5 C -0.09 -1.31 6.23 -91.78 -0.57 -1.88 16 6 C -0.16 -1.94 10.01 -26.70 -0.27 -2.21 16 7 C -0.16 -2.02 10.24 -26.70 -0.27 -2.29 16 8 N -0.52 -10.46 10.34 -6.86 -0.07 -10.53 16 9 C 0.14 2.94 7.37 -82.03 -0.60 2.33 16 10 C -0.15 -3.35 5.53 -104.26 -0.58 -3.92 16 11 C 0.05 1.18 2.20 -92.00 -0.20 0.98 16 12 H 0.05 1.18 5.45 -51.93 -0.28 0.89 16 13 C -0.50 -12.90 6.96 -34.44 -0.24 -13.14 16 14 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 15 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 17 Si 0.87 19.83 26.92 -169.99 -4.58 15.26 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.26 -5.70 6.90 56.52 0.39 -5.31 16 21 C -0.12 -2.25 6.58 -25.25 -0.17 -2.42 16 22 C -0.07 -1.21 6.76 -26.92 -0.18 -1.40 16 23 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 24 H 0.09 1.85 7.18 -51.93 -0.37 1.48 16 25 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 26 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 27 H 0.11 1.52 7.54 -51.93 -0.39 1.12 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.08 1.53 7.90 -51.93 -0.41 1.12 16 33 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 289.89 15.07 4.37 4.37 Total: -1.00 -28.67 289.89 -8.96 -37.63 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.83 Total: 3.32 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -4.56 Total: -15.01 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.64 Total: -45.56 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.58 Total: 15.26 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.67 -8.96 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.248 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds