Wall clock time and date at job start Mon Mar 30 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32381 * 120.49239 * 2 1 4 4 C 1.31770 * 120.77311 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.09110 * 179.97438 * 4 3 2 6 6 C 1.52992 * 117.49903 * 8.74647 * 5 4 3 7 7 C 1.52991 * 117.50019 * 300.08410 * 5 4 3 8 8 N 1.31794 * 121.81850 * 0.26862 * 4 3 2 9 9 C 1.32428 * 120.79678 * 359.44223 * 8 4 3 10 10 C 1.38454 * 118.99083 * 0.55071 * 9 8 4 11 11 C 1.51061 * 109.86516 * 179.69967 * 10 9 8 12 12 H 1.09002 * 110.30758 * 101.88972 * 11 10 9 13 13 C 1.50702 * 110.30284 * 224.04752 * 11 10 9 14 14 H 1.08000 * 120.00419 * 35.14743 * 13 11 10 15 15 C 1.37882 * 119.99851 * 215.13660 * 13 11 10 16 16 N 1.31513 * 119.99721 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 119.99998 * 359.97438 * 15 13 11 18 18 H 1.48497 * 109.47440 * 85.51590 * 17 15 13 19 19 H 1.48502 * 109.47191 * 205.51666 * 17 15 13 20 20 H 1.48504 * 109.47121 * 325.51946 * 17 15 13 21 21 C 1.54416 * 105.15497 * 342.96725 * 11 10 9 22 22 C 1.51166 * 131.30075 * 180.20294 * 9 8 4 23 23 H 1.08993 * 109.47151 * 89.99252 * 1 2 3 24 24 H 1.08999 * 109.47541 * 210.00495 * 1 2 3 25 25 H 1.09008 * 109.46440 * 330.00157 * 1 2 3 26 26 H 1.09003 * 115.54864 * 154.41517 * 5 4 3 27 27 H 1.09004 * 117.50156 * 0.02562 * 6 5 4 28 28 H 1.09000 * 117.49986 * 145.02023 * 6 5 4 29 29 H 1.08997 * 117.50470 * 214.97847 * 7 5 4 30 30 H 1.09005 * 117.50096 * 359.97438 * 7 5 4 31 31 H 0.97004 * 119.99248 * 180.02562 * 16 15 13 32 32 H 1.08997 * 110.81097 * 267.89443 * 21 11 10 33 33 H 1.09001 * 110.98082 * 144.44793 * 21 11 10 34 34 H 1.08996 * 110.30107 * 316.32732 * 22 9 8 35 35 H 1.08996 * 110.29954 * 78.37403 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1787 1.1407 0.0000 4 6 3.4964 1.1472 0.0005 5 6 4.2227 2.4677 -0.0001 6 6 3.3878 3.7332 0.2051 7 6 3.9676 3.4137 -1.1751 8 7 4.1968 0.0307 -0.0042 9 6 3.5935 -1.1481 0.0014 10 6 2.2097 -1.1938 0.0007 11 6 1.7435 -2.6307 0.0002 12 1 1.4259 -2.9256 1.0004 13 6 0.6163 -2.8144 -0.9830 14 1 0.6086 -2.2546 -1.9066 15 6 -0.4052 -3.6974 -0.7036 16 7 -1.3891 -3.8573 -1.5615 17 14 -0.3915 -4.6664 0.8933 18 1 -1.0067 -3.8519 1.9719 19 1 -1.1660 -5.9212 0.7175 20 1 1.0092 -4.9964 1.2600 21 6 2.9746 -3.4544 -0.4359 22 6 4.1499 -2.5537 0.0020 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3632 0.8901 0.5139 26 1 5.2263 2.4524 0.4250 27 1 2.3132 3.6107 0.3410 28 1 3.8422 4.5507 0.7648 29 1 4.8031 4.0212 -1.5228 30 1 3.2747 3.0809 -1.9480 31 1 -2.1079 -4.4782 -1.3647 32 1 2.9801 -3.6003 -1.5160 33 1 3.0068 -4.4125 0.0829 34 1 4.9732 -2.6348 -0.7076 35 1 4.4853 -2.8271 1.0024 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:28 Heat of formation + Delta-G solvation = 43.900656 kcal Electronic energy + Delta-G solvation = -17440.702305 eV Core-core repulsion = 14824.237590 eV Total energy + Delta-G solvation = -2616.464715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.40014 -38.82912 -37.09973 -35.58012 -34.28302 -31.50335 -30.30243 -28.89044 -26.23712 -24.85403 -23.33552 -22.99420 -21.39388 -21.13846 -19.27543 -18.61785 -17.27696 -16.48529 -16.38715 -15.82198 -15.26834 -14.95619 -14.78401 -14.26368 -14.07508 -13.78616 -13.62993 -13.35598 -13.06767 -12.84186 -12.67799 -12.39762 -12.32144 -12.09740 -11.84645 -11.62850 -11.44729 -11.33223 -11.26785 -11.07664 -10.69094 -10.08965 -9.63471 -8.25303 -6.28874 0.03032 0.11152 1.38393 1.40798 1.49973 2.36833 2.55666 2.68623 2.99284 3.08090 3.21230 3.64322 3.80297 3.92938 3.95753 4.13135 4.19833 4.29537 4.34499 4.59063 4.67439 4.74906 4.78255 4.81253 4.83649 4.96742 5.00128 5.10013 5.16519 5.23155 5.31357 5.35438 5.44590 5.58714 5.64844 6.12827 6.34015 6.72635 7.19598 7.34091 8.90829 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.007185 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.758700 B = 3895.868886 C = 4386.779337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.174 3.826 3 N -0.530 5.530 4 C 0.317 3.683 5 C -0.112 4.112 6 C -0.141 4.141 7 C -0.149 4.149 8 N -0.531 5.531 9 C 0.144 3.856 10 C -0.189 4.189 11 C 0.052 3.948 12 H 0.056 0.944 13 C -0.493 4.493 14 H 0.027 0.973 15 C 0.024 3.976 16 N -0.944 5.944 17 Si 0.930 3.070 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.237 1.237 21 C -0.113 4.113 22 C -0.061 4.061 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.074 0.926 31 H 0.266 0.734 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 8.475 5.963 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.030 3.970 3 N -0.245 5.245 4 C 0.050 3.950 5 C -0.132 4.132 6 C -0.179 4.179 7 C -0.187 4.187 8 N -0.245 5.245 9 C -0.002 4.002 10 C -0.193 4.193 11 C 0.032 3.968 12 H 0.073 0.927 13 C -0.531 4.531 14 H 0.045 0.955 15 C -0.174 4.174 16 N -0.583 5.583 17 Si 0.754 3.246 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.160 1.160 21 C -0.151 4.151 22 C -0.098 4.098 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.158 0.842 27 H 0.110 0.890 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.719 9.228 5.919 15.333 hybrid contribution -1.134 -1.479 0.116 1.867 sum 9.585 7.749 6.036 13.724 Atomic orbital electron populations 1.20517 0.87311 1.02947 1.02864 1.21477 0.98124 0.87205 0.90177 1.67998 1.09844 1.29727 1.16958 1.22652 0.86373 0.93728 0.92215 1.20703 1.00220 0.84321 1.07945 1.23068 0.99987 0.95890 0.98956 1.23037 1.03794 1.00628 0.91282 1.67386 1.42410 0.97927 1.16819 1.22767 0.91870 0.95018 0.90548 1.22558 0.96523 0.98963 1.01305 1.18625 0.94934 0.86578 0.96692 0.92670 1.20762 1.05367 1.23369 1.03609 0.95462 1.25782 0.94474 0.97344 0.99802 1.70030 1.12225 1.37886 1.38156 0.85994 0.80068 0.78388 0.80181 1.19436 1.21636 1.16008 1.22598 0.92746 0.98348 1.01443 1.21114 0.98922 0.85518 1.04265 0.91345 0.90758 0.89787 0.84227 0.89042 0.85244 0.85109 0.90721 0.92504 0.91954 0.89355 0.88388 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.19 9.12 71.24 0.65 -2.54 16 2 C 0.17 7.42 6.81 42.54 0.29 7.71 16 3 N -0.53 -20.96 9.29 -176.06 -1.64 -22.60 16 4 C 0.32 11.71 7.31 138.76 1.01 12.73 16 5 C -0.11 -3.04 6.23 -11.54 -0.07 -3.11 16 6 C -0.14 -3.12 10.01 30.61 0.31 -2.81 16 7 C -0.15 -3.37 10.24 30.61 0.31 -3.06 16 8 N -0.53 -20.46 10.34 -175.62 -1.82 -22.28 16 9 C 0.14 5.63 7.37 42.67 0.31 5.95 16 10 C -0.19 -8.18 5.53 -19.63 -0.11 -8.28 16 11 C 0.05 2.27 2.20 -11.69 -0.03 2.24 16 12 H 0.06 2.38 5.45 -2.39 -0.01 2.37 16 13 C -0.49 -26.10 6.96 25.60 0.18 -25.92 16 14 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 15 C 0.02 1.29 5.47 84.66 0.46 1.75 16 16 N -0.94 -55.65 13.96 21.45 0.30 -55.35 16 17 Si 0.93 40.59 26.92 68.60 1.85 42.44 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.24 -9.23 6.90 99.48 0.69 -8.54 16 21 C -0.11 -4.17 6.58 31.55 0.21 -3.96 16 22 C -0.06 -1.92 6.76 30.47 0.21 -1.71 16 23 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 24 H 0.07 3.18 7.18 -2.39 -0.02 3.17 16 25 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 26 H 0.14 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.09 2.39 7.54 -2.39 -0.02 2.37 16 28 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.06 2.45 7.90 -2.39 -0.02 2.43 16 33 H 0.09 2.88 8.11 -2.39 -0.02 2.86 16 34 H 0.10 2.73 8.14 -2.39 -0.02 2.72 16 35 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -64.09 289.89 3.50 -60.60 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 1.06 Total: 18.20 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.74 Total: -21.01 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -3.15 Total: -100.23 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.85 Total: 42.44 kcal Total: -64.09 3.50 -60.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.499 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds