Wall clock time and date at job start Mon Mar 30 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47072 * 264.99104 * 3 2 1 5 5 H 1.48503 * 109.46911 * 24.99178 * 3 2 1 6 6 H 1.48505 * 109.46745 * 144.98690 * 3 2 1 7 7 C 1.40117 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00269 * 187.12792 * 7 2 1 9 9 C 1.41554 * 119.99833 * 7.13210 * 7 2 1 10 10 N 1.33955 * 120.59038 * 7.77190 * 9 7 2 11 11 C 1.31379 * 120.37702 * 180.40457 * 10 9 7 12 12 C 1.50701 * 119.00682 * 179.82250 * 11 10 9 13 13 C 1.53004 * 117.49620 * 345.81089 * 12 11 10 14 14 C 1.53002 * 117.49652 * 54.46669 * 12 11 10 15 15 N 1.31863 * 121.99391 * 359.54858 * 11 10 9 16 16 C 1.33011 * 121.54112 * 0.23479 * 15 11 10 17 17 C 1.37505 * 118.95949 * 359.74609 * 16 15 11 18 18 C 1.50297 * 122.89284 * 180.76042 * 17 16 15 19 19 C 1.52832 * 110.44591 * 342.12316 * 18 17 16 20 20 C 1.53307 * 108.46736 * 50.83491 * 19 18 17 21 21 C 1.50465 * 118.50630 * 179.40103 * 16 15 11 22 22 H 0.96998 * 120.00317 * 0.02562 * 1 2 3 23 23 H 1.08994 * 115.55448 * 200.14303 * 12 11 10 24 24 H 1.09001 * 117.50092 * 215.00297 * 13 12 11 25 25 H 1.09007 * 117.49892 * 0.02562 * 13 12 11 26 26 H 1.08995 * 117.50021 * 359.97438 * 14 12 11 27 27 H 1.09002 * 117.49923 * 144.97734 * 14 12 11 28 28 H 1.09003 * 109.30912 * 102.42841 * 18 17 16 29 29 H 1.09007 * 109.30235 * 221.82573 * 18 17 16 30 30 H 1.09006 * 109.63875 * 170.52271 * 19 18 17 31 31 H 1.09000 * 109.64242 * 291.13882 * 19 18 17 32 32 H 1.09004 * 109.62801 * 50.08342 * 20 19 18 33 33 H 1.08998 * 109.62768 * 170.46751 * 20 19 18 34 34 H 1.09006 * 109.29913 * 282.62945 * 21 16 15 35 35 H 1.08999 * 109.30171 * 42.00573 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5941 1.9853 -1.3947 5 1 1.3892 2.6809 0.5915 6 1 3.4813 1.4730 0.8034 7 6 2.0073 -1.2134 0.0005 8 1 3.0811 -1.2170 0.1166 9 6 1.3078 -2.4346 -0.1511 10 7 0.0020 -2.4397 -0.4501 11 6 -0.6449 -3.5756 -0.5821 12 6 -2.1144 -3.5452 -0.9148 13 6 -2.8472 -2.2114 -0.7563 14 6 -2.5419 -2.7560 -2.1539 15 7 -0.0462 -4.7415 -0.4374 16 6 1.2485 -4.8273 -0.1446 17 6 1.9755 -3.6697 0.0045 18 6 3.4453 -3.6636 0.3185 19 6 3.8794 -5.0221 0.8680 20 6 3.3812 -6.1137 -0.0862 21 6 1.8589 -6.1928 0.0185 22 1 -0.4850 0.8400 -0.0004 23 1 -2.6682 -4.4544 -0.6814 24 1 -3.8830 -2.2433 -0.4186 25 1 -2.2662 -1.3558 -0.4117 26 1 -1.7604 -2.2584 -2.7281 27 1 -3.3768 -3.1463 -2.7360 28 1 4.0070 -3.4461 -0.5900 29 1 3.6521 -2.8920 1.0601 30 1 4.9668 -5.0605 0.9328 31 1 3.4451 -5.1733 1.8563 32 1 3.6653 -5.8639 -1.1085 33 1 3.8204 -7.0716 0.1922 34 1 1.5852 -6.5957 0.9937 35 1 1.4778 -6.8532 -0.7605 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261003756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:52 Heat of formation + Delta-G solvation = 41.798700 kcal Electronic energy + Delta-G solvation = -17622.311249 eV Core-core repulsion = 15005.755387 eV Total energy + Delta-G solvation = -2616.555862 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49739 -36.79436 -35.23087 -34.06086 -31.81446 -29.89643 -28.93667 -26.38364 -23.91095 -22.81723 -21.55880 -21.15344 -20.45187 -18.42487 -17.51689 -16.09430 -15.32388 -14.76770 -14.38993 -13.86694 -13.59482 -13.18871 -13.03489 -12.82137 -12.39312 -12.21070 -11.49985 -11.31830 -11.29528 -11.16681 -10.70359 -10.59541 -10.49897 -10.39442 -10.35440 -9.90682 -9.80102 -9.63282 -9.43718 -8.78697 -8.43217 -7.50294 -7.33468 -6.52467 -4.73763 2.63182 2.84843 3.02896 3.04877 3.21477 3.85674 4.50368 4.87773 5.06137 5.42676 5.43526 5.51485 5.66032 5.70884 5.81367 5.92751 6.02529 6.07739 6.17080 6.28107 6.30843 6.35852 6.43751 6.50565 6.58091 6.62556 6.72888 6.81403 6.91192 6.92942 7.04131 7.25508 7.29583 7.52105 7.88991 8.05304 8.52056 8.78848 9.12795 10.11751 10.26381 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.011486 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.336513 B = 2437.253466 C = 4082.802615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.422 4.422 8 H 0.089 0.911 9 C 0.278 3.722 10 N -0.516 5.516 11 C 0.336 3.664 12 C -0.082 4.082 13 C -0.160 4.160 14 C -0.165 4.165 15 N -0.622 5.622 16 C 0.165 3.835 17 C -0.281 4.281 18 C -0.043 4.043 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.059 4.059 22 H 0.276 0.724 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.128 0.872 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -3.079 -0.142 3.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.153 4.153 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.107 0.893 9 C 0.148 3.852 10 N -0.235 5.235 11 C 0.066 3.934 12 C -0.102 4.102 13 C -0.198 4.198 14 C -0.204 4.204 15 N -0.345 5.345 16 C 0.028 3.972 17 C -0.290 4.290 18 C -0.081 4.081 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.097 4.097 22 H 0.087 0.913 23 H 0.123 0.877 24 H 0.097 0.903 25 H 0.146 0.854 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.832 -2.931 -0.337 3.065 hybrid contribution 1.188 0.681 0.176 1.380 sum 2.020 -2.250 -0.161 3.028 Atomic orbital electron populations 1.69974 1.07381 1.28262 1.27519 1.26070 0.94864 1.01150 0.93187 0.86333 0.80413 0.80538 0.79539 1.19214 1.20089 1.18519 1.19639 0.95026 0.89164 1.41739 0.89274 1.18728 0.87932 0.91517 0.87063 1.68954 1.08495 1.26541 1.19532 1.21607 0.94283 0.85140 0.92415 1.20370 0.90579 0.95893 1.03330 1.23080 0.99362 0.98645 0.98677 1.22804 1.02491 1.04062 0.91025 1.67733 1.10672 1.29831 1.26309 1.20362 0.89710 0.93501 0.93663 1.20628 0.96951 0.94749 1.16673 1.19879 0.92901 0.95722 0.99629 1.21567 0.99191 0.95903 0.98837 1.21499 0.95298 0.98254 1.00059 1.20131 0.94106 0.93779 1.01640 0.91291 0.87704 0.90254 0.85365 0.88977 0.89833 0.92982 0.91782 0.92664 0.92360 0.92105 0.92362 0.91440 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.93 11.30 55.55 0.63 -17.30 16 2 C 0.07 1.81 5.47 -17.34 -0.09 1.72 16 3 Si 0.91 17.95 29.57 -169.99 -5.03 12.93 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.42 -10.86 8.59 -37.61 -0.32 -11.18 16 8 H 0.09 2.14 6.40 -52.49 -0.34 1.80 16 9 C 0.28 7.51 6.55 -84.53 -0.55 6.95 16 10 N -0.52 -14.06 7.11 -8.65 -0.06 -14.12 16 11 C 0.34 8.64 7.30 -157.49 -1.15 7.49 16 12 C -0.08 -1.76 6.23 -91.77 -0.57 -2.33 16 13 C -0.16 -3.16 10.01 -26.69 -0.27 -3.43 16 14 C -0.17 -3.17 10.21 -26.69 -0.27 -3.44 16 15 N -0.62 -15.78 10.20 -7.26 -0.07 -15.85 16 16 C 0.17 3.91 6.63 -82.46 -0.55 3.37 16 17 C -0.28 -6.85 5.79 -103.94 -0.60 -7.45 16 18 C -0.04 -0.86 4.83 -28.16 -0.14 -1.00 16 19 C -0.12 -1.93 5.98 -26.66 -0.16 -2.09 16 20 C -0.11 -1.79 5.97 -26.67 -0.16 -1.95 16 21 C -0.06 -1.09 5.95 -28.10 -0.17 -1.26 16 22 H 0.28 6.31 8.29 -40.82 -0.34 5.98 16 23 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.13 2.92 7.26 -51.93 -0.38 2.54 16 26 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.30 7.03 -51.92 -0.36 0.94 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -28.83 287.48 -10.06 -38.89 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.86 Total: 5.73 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -5.00 Total: -14.61 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.49 Total: -47.28 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.83 -10.06 -38.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261003756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.693 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds