Wall clock time and date at job start Mon Mar 30 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47072 * 264.99104 * 3 2 1 5 5 H 1.48503 * 109.46911 * 24.99178 * 3 2 1 6 6 H 1.48505 * 109.46745 * 144.98690 * 3 2 1 7 7 C 1.40117 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00269 * 187.12792 * 7 2 1 9 9 C 1.41554 * 119.99833 * 7.13210 * 7 2 1 10 10 N 1.33955 * 120.59038 * 7.77190 * 9 7 2 11 11 C 1.31379 * 120.37702 * 180.40457 * 10 9 7 12 12 C 1.50701 * 119.00682 * 179.82250 * 11 10 9 13 13 C 1.53004 * 117.49620 * 345.81089 * 12 11 10 14 14 C 1.53002 * 117.49652 * 54.46669 * 12 11 10 15 15 N 1.31863 * 121.99391 * 359.54858 * 11 10 9 16 16 C 1.33011 * 121.54112 * 0.23479 * 15 11 10 17 17 C 1.37505 * 118.95949 * 359.74609 * 16 15 11 18 18 C 1.50297 * 122.89284 * 180.76042 * 17 16 15 19 19 C 1.52832 * 110.44591 * 342.12316 * 18 17 16 20 20 C 1.53307 * 108.46736 * 50.83491 * 19 18 17 21 21 C 1.50465 * 118.50630 * 179.40103 * 16 15 11 22 22 H 0.96998 * 120.00317 * 0.02562 * 1 2 3 23 23 H 1.08994 * 115.55448 * 200.14303 * 12 11 10 24 24 H 1.09001 * 117.50092 * 215.00297 * 13 12 11 25 25 H 1.09007 * 117.49892 * 0.02562 * 13 12 11 26 26 H 1.08995 * 117.50021 * 359.97438 * 14 12 11 27 27 H 1.09002 * 117.49923 * 144.97734 * 14 12 11 28 28 H 1.09003 * 109.30912 * 102.42841 * 18 17 16 29 29 H 1.09007 * 109.30235 * 221.82573 * 18 17 16 30 30 H 1.09006 * 109.63875 * 170.52271 * 19 18 17 31 31 H 1.09000 * 109.64242 * 291.13882 * 19 18 17 32 32 H 1.09004 * 109.62801 * 50.08342 * 20 19 18 33 33 H 1.08998 * 109.62768 * 170.46751 * 20 19 18 34 34 H 1.09006 * 109.29913 * 282.62945 * 21 16 15 35 35 H 1.08999 * 109.30171 * 42.00573 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5941 1.9853 -1.3947 5 1 1.3892 2.6809 0.5915 6 1 3.4813 1.4730 0.8034 7 6 2.0073 -1.2134 0.0005 8 1 3.0811 -1.2170 0.1166 9 6 1.3078 -2.4346 -0.1511 10 7 0.0020 -2.4397 -0.4501 11 6 -0.6449 -3.5756 -0.5821 12 6 -2.1144 -3.5452 -0.9148 13 6 -2.8472 -2.2114 -0.7563 14 6 -2.5419 -2.7560 -2.1539 15 7 -0.0462 -4.7415 -0.4374 16 6 1.2485 -4.8273 -0.1446 17 6 1.9755 -3.6697 0.0045 18 6 3.4453 -3.6636 0.3185 19 6 3.8794 -5.0221 0.8680 20 6 3.3812 -6.1137 -0.0862 21 6 1.8589 -6.1928 0.0185 22 1 -0.4850 0.8400 -0.0004 23 1 -2.6682 -4.4544 -0.6814 24 1 -3.8830 -2.2433 -0.4186 25 1 -2.2662 -1.3558 -0.4117 26 1 -1.7604 -2.2584 -2.7281 27 1 -3.3768 -3.1463 -2.7360 28 1 4.0070 -3.4461 -0.5900 29 1 3.6521 -2.8920 1.0601 30 1 4.9668 -5.0605 0.9328 31 1 3.4451 -5.1733 1.8563 32 1 3.6653 -5.8639 -1.1085 33 1 3.8204 -7.0716 0.1922 34 1 1.5852 -6.5957 0.9937 35 1 1.4778 -6.8532 -0.7605 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261003756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:52 Heat of formation + Delta-G solvation = 26.805230 kcal Electronic energy + Delta-G solvation = -17622.961415 eV Core-core repulsion = 15005.755387 eV Total energy + Delta-G solvation = -2617.206028 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29461 -38.37926 -36.84154 -35.88703 -33.64030 -31.59525 -30.56014 -28.26594 -25.55615 -24.47175 -23.12503 -22.88417 -22.05336 -20.04650 -19.37605 -17.83546 -17.10948 -16.40233 -15.93483 -15.49928 -15.24225 -14.76535 -14.64213 -14.46523 -14.03813 -13.76366 -13.17072 -12.95917 -12.90384 -12.82679 -12.45027 -12.20757 -11.97748 -11.93160 -11.80100 -11.48132 -11.40339 -11.22478 -11.12930 -10.57370 -10.33465 -9.33571 -9.23266 -8.37641 -6.68228 0.77907 1.04929 1.38876 1.51678 1.54882 2.18494 2.74218 3.15009 3.43329 3.87011 3.92534 4.08991 4.10766 4.12390 4.18234 4.36903 4.39718 4.55282 4.74846 4.77705 4.80358 4.86654 4.94100 5.03013 5.04540 5.11795 5.15778 5.25274 5.31344 5.33404 5.48782 5.52332 5.62671 5.77896 6.04944 6.13345 6.63875 6.86537 7.23184 8.26436 8.38858 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.011486 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.336513 B = 2437.253466 C = 4082.802615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.029 3.971 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.447 4.447 8 H 0.097 0.903 9 C 0.235 3.765 10 N -0.541 5.541 11 C 0.310 3.690 12 C -0.104 4.104 13 C -0.152 4.152 14 C -0.145 4.145 15 N -0.638 5.638 16 C 0.147 3.853 17 C -0.301 4.301 18 C -0.040 4.040 19 C -0.111 4.111 20 C -0.105 4.105 21 C -0.056 4.056 22 H 0.283 0.717 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.126 0.874 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -3.584 -0.089 4.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.480 4.480 8 H 0.115 0.885 9 C 0.106 3.894 10 N -0.261 5.261 11 C 0.040 3.960 12 C -0.124 4.124 13 C -0.189 4.189 14 C -0.183 4.183 15 N -0.362 5.362 16 C 0.010 3.990 17 C -0.310 4.310 18 C -0.079 4.079 19 C -0.148 4.148 20 C -0.143 4.143 21 C -0.094 4.094 22 H 0.093 0.907 23 H 0.139 0.861 24 H 0.135 0.865 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.144 0.856 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.622 -3.460 -0.280 3.832 hybrid contribution 0.900 0.811 0.156 1.221 sum 2.522 -2.649 -0.124 3.660 Atomic orbital electron populations 1.70072 1.08941 1.29602 1.27626 1.27005 0.95717 1.04491 0.92306 0.85160 0.79109 0.75575 0.79550 1.18982 1.19158 1.17629 1.19999 0.95600 0.89873 1.42544 0.88477 1.19368 0.88693 0.93333 0.88031 1.68964 1.09046 1.27464 1.20653 1.22411 0.96167 0.85141 0.92262 1.20545 0.88816 0.97374 1.05638 1.23030 1.00445 0.96339 0.99123 1.22815 1.02555 1.02472 0.90499 1.67868 1.11710 1.29679 1.26922 1.21229 0.89432 0.95786 0.92566 1.21089 0.99171 0.94176 1.16515 1.19892 0.90342 0.98088 0.99545 1.21547 1.01231 0.93568 0.98459 1.21501 0.93041 0.99987 0.99788 1.20250 0.96055 0.90765 1.02313 0.90653 0.86106 0.86534 0.88756 0.91777 0.85631 0.92874 0.92740 0.89284 0.92606 0.92492 0.88337 0.90399 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.68 11.30 21.85 0.25 -38.44 16 2 C 0.03 1.44 5.47 85.32 0.47 1.91 16 3 Si 0.99 37.11 29.57 68.60 2.03 39.14 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 6 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.45 -23.75 8.59 23.54 0.20 -23.55 16 8 H 0.10 4.78 6.40 -2.91 -0.02 4.77 16 9 C 0.24 13.27 6.55 40.38 0.26 13.53 16 10 N -0.54 -30.82 7.11 -181.29 -1.29 -32.11 16 11 C 0.31 16.49 7.30 138.85 1.01 17.51 16 12 C -0.10 -4.50 6.23 -11.54 -0.07 -4.57 16 13 C -0.15 -5.96 10.01 30.62 0.31 -5.66 16 14 C -0.15 -5.48 10.21 30.62 0.31 -5.16 16 15 N -0.64 -33.08 10.20 -176.87 -1.80 -34.89 16 16 C 0.15 7.05 6.63 42.13 0.28 7.33 16 17 C -0.30 -15.04 5.79 -19.42 -0.11 -15.15 16 18 C -0.04 -1.62 4.83 29.67 0.14 -1.47 16 19 C -0.11 -3.37 5.98 30.64 0.18 -3.19 16 20 C -0.11 -3.04 5.97 30.63 0.18 -2.85 16 21 C -0.06 -2.01 5.95 29.71 0.18 -1.83 16 22 H 0.28 13.31 8.29 -92.71 -0.77 12.54 16 23 H 0.12 4.74 8.14 -2.39 -0.02 4.72 16 24 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 25 H 0.09 4.44 7.26 -2.38 -0.02 4.42 16 26 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.13 3.65 8.14 -2.39 -0.02 3.63 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 2.23 7.03 -2.38 -0.02 2.22 16 30 H 0.09 2.14 8.14 -2.38 -0.02 2.13 16 31 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -65.93 287.48 3.62 -62.31 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 1.09 Total: 27.15 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.35 Total: -23.17 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -2.84 Total: -105.43 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -65.93 3.62 -62.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261003756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.118 kcal (2) G-P(sol) polarization free energy of solvation -65.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds