Wall clock time and date at job start Mon Mar 30 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.37860 * 126.22378 * 348.51228 * 3 2 1 5 5 C 1.39961 * 107.09862 * 180.02562 * 4 3 2 6 6 C 1.35365 * 107.85559 * 359.72743 * 5 4 3 7 7 N 1.35758 * 108.85208 * 0.43733 * 6 5 4 8 8 C 1.46500 * 125.68253 * 179.82576 * 7 6 5 9 9 H 1.09000 * 109.47100 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46931 * 299.99878 * 8 7 6 11 11 C 1.53004 * 109.47196 * 60.00227 * 10 8 7 12 12 C 1.53002 * 109.47263 * 59.99640 * 11 10 8 13 13 C 1.53003 * 109.47309 * 300.00291 * 12 11 10 14 14 H 1.08998 * 109.47046 * 300.00443 * 13 12 11 15 15 C 1.50691 * 109.47376 * 179.97438 * 13 12 11 16 16 H 1.07997 * 120.00269 * 239.99690 * 15 13 12 17 17 C 1.37876 * 120.00057 * 59.99877 * 15 13 12 18 18 N 1.31521 * 120.00054 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00197 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47304 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47408 * 119.99985 * 19 17 15 22 22 H 1.48502 * 109.46993 * 239.99872 * 19 17 15 23 23 C 1.53002 * 109.47038 * 59.99938 * 8 7 6 24 24 H 1.07991 * 126.45470 * 0.05984 * 4 3 2 25 25 H 1.08003 * 126.07501 * 180.02562 * 5 4 3 26 26 H 1.08005 * 125.57635 * 180.25602 * 6 5 4 27 27 H 1.09001 * 109.46765 * 179.97438 * 10 8 7 28 28 H 1.08996 * 109.47287 * 299.99657 * 10 8 7 29 29 H 1.08998 * 109.46532 * 300.00121 * 11 10 8 30 30 H 1.08994 * 109.47103 * 179.97438 * 11 10 8 31 31 H 1.08990 * 109.47087 * 180.02562 * 12 11 10 32 32 H 1.09001 * 109.47217 * 60.00027 * 12 11 10 33 33 H 0.96995 * 120.00307 * 179.97438 * 18 17 15 34 34 H 1.08994 * 109.47199 * 59.99990 * 23 8 7 35 35 H 1.09001 * 109.46743 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3832 -1.0889 0.2215 5 6 4.7054 -0.6388 0.1308 6 6 4.6748 0.6863 -0.1444 7 7 3.3805 1.0887 -0.2206 8 6 2.9248 2.4531 -0.4979 9 1 1.8351 2.4792 -0.4985 10 6 3.4574 3.3979 0.5813 11 6 4.9871 3.3612 0.5815 12 6 5.5080 3.8047 -0.7870 13 6 4.9753 2.8600 -1.8662 14 1 5.3143 1.8448 -1.6599 15 6 5.4879 3.2972 -3.2142 16 1 4.7924 3.5732 -3.9929 17 6 6.8449 3.3447 -3.4534 18 7 7.6920 3.0080 -2.5054 19 14 7.4804 3.8873 -5.1241 20 1 6.3326 4.2096 -6.0095 21 1 8.3342 5.0913 -4.9618 22 1 8.2795 2.7917 -5.7294 23 6 3.4457 2.8966 -1.8664 24 1 3.0621 -2.0995 0.4259 25 1 5.5925 -1.2425 0.2533 26 1 5.5388 1.3203 -0.2783 27 1 3.1187 4.4131 0.3748 28 1 3.0863 3.0820 1.5562 29 1 5.3260 2.3460 0.7877 30 1 5.3665 4.0346 1.3500 31 1 6.5976 3.7782 -0.7870 32 1 5.1689 4.8199 -0.9934 33 1 8.6467 3.0411 -2.6737 34 1 3.0663 2.2236 -2.6352 35 1 3.1070 3.9120 -2.0724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:11 Heat of formation + Delta-G solvation = 81.118553 kcal Electronic energy + Delta-G solvation = -17818.583925 eV Core-core repulsion = 15203.733099 eV Total energy + Delta-G solvation = -2614.850826 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39715 -37.52112 -36.17895 -33.30553 -31.56298 -30.07838 -29.16552 -28.33000 -24.96871 -22.61534 -21.70914 -21.27645 -20.45923 -19.33417 -17.05136 -16.39459 -15.15525 -14.98344 -14.75016 -14.30356 -13.94189 -13.50385 -13.16390 -13.05393 -12.81366 -12.44211 -12.22259 -11.89875 -11.79873 -11.76669 -11.52858 -11.19465 -11.04394 -10.78924 -10.73593 -10.23968 -9.98474 -9.35859 -9.12722 -8.79588 -8.37268 -8.31700 -7.73275 -6.08868 -4.13507 1.76060 2.53419 3.16377 3.24514 3.33466 3.36786 3.38938 3.73600 4.20520 4.36846 4.94223 5.14182 5.22190 5.36179 5.61587 5.63738 5.72006 5.80774 5.95582 6.04623 6.19571 6.31522 6.38275 6.44551 6.47061 6.57104 6.61777 6.84660 7.04065 7.13542 7.29316 7.42869 7.54347 7.63099 7.72061 7.85003 7.99526 8.33332 8.88036 9.51203 10.97144 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.007046 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.180266 B = 3973.107051 C = 4049.646389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.294 3.706 3 C 0.019 3.981 4 C -0.116 4.116 5 C -0.225 4.225 6 C 0.051 3.949 7 N -0.400 5.400 8 C 0.127 3.873 9 H 0.080 0.920 10 C -0.122 4.122 11 C -0.144 4.144 12 C -0.116 4.116 13 C 0.030 3.970 14 H 0.051 0.949 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.889 3.111 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.119 4.119 24 H 0.141 0.859 25 H 0.143 0.857 26 H 0.206 0.794 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -2.529 6.378 7.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.020 4.020 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.248 4.248 6 C -0.086 4.086 7 N -0.074 5.074 8 C 0.026 3.974 9 H 0.098 0.902 10 C -0.160 4.160 11 C -0.181 4.181 12 C -0.154 4.154 13 C 0.012 3.988 14 H 0.068 0.932 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.157 4.157 24 H 0.158 0.842 25 H 0.161 0.839 26 H 0.222 0.778 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.377 -2.158 6.328 8.580 hybrid contribution 0.758 0.400 -0.996 1.314 sum -4.619 -1.758 5.332 7.270 Atomic orbital electron populations 1.81227 1.11481 1.06817 1.11939 1.24492 0.91113 0.93894 0.92493 1.15690 0.82927 0.89553 1.21118 1.21137 0.92387 0.96521 1.04540 1.20856 0.96844 0.94688 1.12412 1.23058 0.87260 0.96616 1.01619 1.44308 1.05510 1.06980 1.50583 1.21778 0.98385 0.78671 0.98595 0.90186 1.21831 0.98473 0.98880 0.96818 1.22121 0.93337 1.02294 1.00328 1.21726 1.04093 0.98457 0.91160 1.19115 0.87551 0.97188 0.94930 0.93170 1.21160 0.91603 1.44909 0.97398 0.92800 1.24906 0.96978 0.95155 0.96681 1.69828 1.02275 1.48563 1.32189 0.86580 0.78891 0.78322 0.84475 1.19937 1.21066 1.20983 1.22027 1.01225 1.00684 0.91801 0.84155 0.83929 0.77817 0.90465 0.92544 0.90856 0.93082 0.88511 0.94483 0.92937 0.92499 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.48 18.54 41.84 0.78 -6.70 16 2 C 0.29 4.73 14.93 -22.47 -0.34 4.39 16 3 C 0.02 0.31 6.75 -83.50 -0.56 -0.26 16 4 C -0.12 -1.66 10.85 -39.07 -0.42 -2.08 16 5 C -0.22 -3.34 10.81 -39.96 -0.43 -3.77 16 6 C 0.05 0.85 7.12 -16.84 -0.12 0.73 16 7 N -0.40 -6.57 2.64 -106.94 -0.28 -6.85 16 8 C 0.13 2.06 3.36 -67.93 -0.23 1.83 16 9 H 0.08 1.23 7.32 -51.93 -0.38 0.85 16 10 C -0.12 -1.83 5.63 -26.73 -0.15 -1.98 16 11 C -0.14 -2.37 5.57 -26.73 -0.15 -2.52 16 12 C -0.12 -2.38 4.77 -26.73 -0.13 -2.51 16 13 C 0.03 0.65 1.75 -91.77 -0.16 0.49 16 14 H 0.05 1.15 4.24 -51.93 -0.22 0.93 16 15 C -0.51 -13.00 8.56 -34.44 -0.29 -13.29 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -23.23 11.32 55.43 0.63 -22.60 16 19 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.12 -2.24 4.85 -26.73 -0.13 -2.37 16 24 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 25 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 26 H 0.21 3.69 3.80 -52.48 -0.20 3.49 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.21 4.24 -51.93 -0.22 0.99 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 2.25 6.07 -51.93 -0.32 1.94 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 280.29 15.07 4.22 4.22 Total: -1.00 -26.05 280.29 -7.14 -33.20 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.26 Total: 3.22 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -3.21 Total: -19.78 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 1.12 Total: -36.15 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.05 -7.14 -33.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.318 kcal (2) G-P(sol) polarization free energy of solvation -26.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds