Wall clock time and date at job start Mon Mar 30 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.37860 * 126.22378 * 348.51228 * 3 2 1 5 5 C 1.39961 * 107.09862 * 180.02562 * 4 3 2 6 6 C 1.35365 * 107.85559 * 359.72743 * 5 4 3 7 7 N 1.35758 * 108.85208 * 0.43733 * 6 5 4 8 8 C 1.46500 * 125.68253 * 179.82576 * 7 6 5 9 9 H 1.09000 * 109.47100 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46931 * 299.99878 * 8 7 6 11 11 C 1.53004 * 109.47196 * 60.00227 * 10 8 7 12 12 C 1.53002 * 109.47263 * 59.99640 * 11 10 8 13 13 C 1.53003 * 109.47309 * 300.00291 * 12 11 10 14 14 H 1.08998 * 109.47046 * 300.00443 * 13 12 11 15 15 C 1.50691 * 109.47376 * 179.97438 * 13 12 11 16 16 H 1.07997 * 120.00269 * 239.99690 * 15 13 12 17 17 C 1.37876 * 120.00057 * 59.99877 * 15 13 12 18 18 N 1.31521 * 120.00054 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00197 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47304 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47408 * 119.99985 * 19 17 15 22 22 H 1.48502 * 109.46993 * 239.99872 * 19 17 15 23 23 C 1.53002 * 109.47038 * 59.99938 * 8 7 6 24 24 H 1.07991 * 126.45470 * 0.05984 * 4 3 2 25 25 H 1.08003 * 126.07501 * 180.02562 * 5 4 3 26 26 H 1.08005 * 125.57635 * 180.25602 * 6 5 4 27 27 H 1.09001 * 109.46765 * 179.97438 * 10 8 7 28 28 H 1.08996 * 109.47287 * 299.99657 * 10 8 7 29 29 H 1.08998 * 109.46532 * 300.00121 * 11 10 8 30 30 H 1.08994 * 109.47103 * 179.97438 * 11 10 8 31 31 H 1.08990 * 109.47087 * 180.02562 * 12 11 10 32 32 H 1.09001 * 109.47217 * 60.00027 * 12 11 10 33 33 H 0.96995 * 120.00307 * 179.97438 * 18 17 15 34 34 H 1.08994 * 109.47199 * 59.99990 * 23 8 7 35 35 H 1.09001 * 109.46743 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3832 -1.0889 0.2215 5 6 4.7054 -0.6388 0.1308 6 6 4.6748 0.6863 -0.1444 7 7 3.3805 1.0887 -0.2206 8 6 2.9248 2.4531 -0.4979 9 1 1.8351 2.4792 -0.4985 10 6 3.4574 3.3979 0.5813 11 6 4.9871 3.3612 0.5815 12 6 5.5080 3.8047 -0.7870 13 6 4.9753 2.8600 -1.8662 14 1 5.3143 1.8448 -1.6599 15 6 5.4879 3.2972 -3.2142 16 1 4.7924 3.5732 -3.9929 17 6 6.8449 3.3447 -3.4534 18 7 7.6920 3.0080 -2.5054 19 14 7.4804 3.8873 -5.1241 20 1 6.3326 4.2096 -6.0095 21 1 8.3342 5.0913 -4.9618 22 1 8.2795 2.7917 -5.7294 23 6 3.4457 2.8966 -1.8664 24 1 3.0621 -2.0995 0.4259 25 1 5.5925 -1.2425 0.2533 26 1 5.5388 1.3203 -0.2783 27 1 3.1187 4.4131 0.3748 28 1 3.0863 3.0820 1.5562 29 1 5.3260 2.3460 0.7877 30 1 5.3665 4.0346 1.3500 31 1 6.5976 3.7782 -0.7870 32 1 5.1689 4.8199 -0.9934 33 1 8.6467 3.0411 -2.6737 34 1 3.0663 2.2236 -2.6352 35 1 3.1070 3.9120 -2.0724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:11 Heat of formation + Delta-G solvation = 69.715213 kcal Electronic energy + Delta-G solvation = -17819.078411 eV Core-core repulsion = 15203.733099 eV Total energy + Delta-G solvation = -2615.345312 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.65444 -38.94148 -37.46454 -35.05617 -32.99325 -31.69029 -30.39159 -29.68762 -26.79943 -23.98666 -22.99391 -22.77122 -21.73859 -20.77570 -18.35132 -18.26453 -16.66816 -16.35714 -16.27936 -15.73666 -15.27219 -14.79735 -14.68412 -14.39700 -14.10449 -13.95744 -13.76022 -13.28215 -13.13711 -13.01034 -12.92367 -12.84999 -12.61094 -12.50667 -12.36934 -11.81672 -11.69108 -11.03334 -10.70390 -10.50809 -10.18612 -9.55811 -8.98392 -8.04374 -6.14301 0.53172 1.28126 1.40473 1.45166 1.53120 1.95241 2.15521 2.46237 2.51984 2.95856 3.23760 3.66148 3.85743 4.03794 4.34006 4.39749 4.45335 4.60671 4.67033 4.72872 4.75074 4.88606 5.02174 5.05981 5.16557 5.28045 5.32738 5.37114 5.46463 5.63969 5.72502 5.98071 6.10145 6.18919 6.24767 6.29714 6.45536 6.47302 6.94412 7.51853 8.99203 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.007046 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.180266 B = 3973.107051 C = 4049.646389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.308 3.692 3 C 0.008 3.992 4 C -0.103 4.103 5 C -0.220 4.220 6 C 0.033 3.967 7 N -0.407 5.407 8 C 0.132 3.868 9 H 0.092 0.908 10 C -0.116 4.116 11 C -0.136 4.136 12 C -0.106 4.106 13 C 0.028 3.972 14 H 0.041 0.959 15 C -0.533 4.533 16 H 0.041 0.959 17 C 0.023 3.977 18 N -0.906 5.906 19 Si 0.939 3.061 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.113 4.113 24 H 0.171 0.829 25 H 0.163 0.837 26 H 0.187 0.813 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -3.150 7.257 8.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.006 4.006 3 C -0.104 4.104 4 C -0.133 4.133 5 C -0.244 4.244 6 C -0.103 4.103 7 N -0.081 5.081 8 C 0.030 3.970 9 H 0.110 0.890 10 C -0.153 4.153 11 C -0.173 4.173 12 C -0.145 4.145 13 C 0.010 3.990 14 H 0.059 0.941 15 C -0.571 4.571 16 H 0.060 0.940 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.767 3.233 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.151 4.151 24 H 0.188 0.812 25 H 0.180 0.820 26 H 0.204 0.796 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.989 -2.778 7.208 9.774 hybrid contribution 0.978 0.560 -1.297 1.718 sum -5.010 -2.218 5.911 8.060 Atomic orbital electron populations 1.81246 1.12020 1.07473 1.12806 1.24456 0.90994 0.93284 0.91850 1.15861 0.82788 0.89867 1.21850 1.21515 0.91635 0.97415 1.02691 1.21152 0.98002 0.94039 1.11164 1.22911 0.86969 0.97363 1.03059 1.44301 1.05503 1.07127 1.51161 1.21695 0.98932 0.79148 0.97204 0.88964 1.21806 0.96900 0.99291 0.97334 1.22002 0.94657 1.02624 0.98007 1.21490 1.02054 0.97615 0.93299 1.19072 0.89505 0.96779 0.93619 0.94120 1.21538 0.91763 1.44890 0.98929 0.94035 1.25488 0.97335 0.95541 0.99237 1.69933 1.02272 1.49152 1.33218 0.85794 0.78173 0.77922 0.81439 1.20069 1.20784 1.20841 1.21867 0.99139 1.00623 0.93442 0.81178 0.81979 0.79647 0.89312 0.90530 0.90668 0.91585 0.91647 0.95504 0.93009 0.93946 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.83 18.54 19.01 0.35 -14.48 16 2 C 0.31 9.24 14.93 88.33 1.32 10.56 16 3 C 0.01 0.24 6.75 39.40 0.27 0.50 16 4 C -0.10 -2.63 10.85 22.60 0.25 -2.39 16 5 C -0.22 -6.04 10.81 22.02 0.24 -5.80 16 6 C 0.03 1.07 7.12 83.42 0.59 1.66 16 7 N -0.41 -12.69 2.64 -492.26 -1.30 -13.99 16 8 C 0.13 4.06 3.36 44.99 0.15 4.21 16 9 H 0.09 2.64 7.32 -2.39 -0.02 2.62 16 10 C -0.12 -3.19 5.63 30.60 0.17 -3.02 16 11 C -0.14 -4.32 5.57 30.60 0.17 -4.15 16 12 C -0.11 -4.38 4.77 30.60 0.15 -4.24 16 13 C 0.03 1.24 1.75 -11.54 -0.02 1.22 16 14 H 0.04 1.90 4.24 -2.39 -0.01 1.89 16 15 C -0.53 -27.55 8.56 25.60 0.22 -27.33 16 16 H 0.04 2.18 7.74 -2.91 -0.02 2.16 16 17 C 0.02 1.22 5.30 84.65 0.45 1.67 16 18 N -0.91 -48.09 11.32 21.45 0.24 -47.85 16 19 Si 0.94 42.03 29.54 68.60 2.03 44.06 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.11 -4.21 4.85 30.60 0.15 -4.07 16 24 H 0.17 3.25 8.06 -2.92 -0.02 3.23 16 25 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 26 H 0.19 6.73 3.80 -2.91 -0.01 6.72 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 2.40 4.24 -2.39 -0.01 2.39 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 3.11 6.07 -2.39 -0.01 3.10 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -55.36 280.29 6.52 -48.84 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.10 Total: 14.58 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.10 Total: -31.17 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -0.70 Total: -76.31 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -55.36 6.52 -48.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.557 kcal (2) G-P(sol) polarization free energy of solvation -55.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds