Wall clock time and date at job start Mon Mar 30 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.37861 * 126.22250 * 96.03509 * 3 2 1 5 5 C 1.39958 * 107.10193 * 180.18298 * 4 3 2 6 6 C 1.35364 * 107.85647 * 359.57691 * 5 4 3 7 7 N 1.35767 * 108.84821 * 0.25892 * 6 5 4 8 8 C 1.46501 * 125.68015 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47175 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46833 * 60.00182 * 8 7 6 11 11 C 1.53007 * 109.47204 * 299.99821 * 10 8 7 12 12 C 1.52995 * 109.47029 * 300.00191 * 11 10 8 13 13 C 1.53002 * 109.47283 * 59.99858 * 12 11 10 14 14 H 1.09005 * 109.46703 * 59.99922 * 13 12 11 15 15 C 1.50704 * 109.47029 * 179.97438 * 13 12 11 16 16 H 1.07994 * 120.00094 * 120.00246 * 15 13 12 17 17 C 1.37878 * 119.99679 * 300.00150 * 15 13 12 18 18 N 1.31504 * 120.00501 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99607 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47224 * 60.00071 * 19 17 15 21 21 H 1.48496 * 109.47113 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46986 * 300.00117 * 19 17 15 23 23 C 1.52993 * 109.47120 * 299.99966 * 13 12 11 24 24 H 1.07999 * 126.45242 * 0.02562 * 4 3 2 25 25 H 1.08000 * 126.07480 * 179.83184 * 5 4 3 26 26 H 1.07997 * 125.57804 * 180.26285 * 6 5 4 27 27 H 1.09001 * 109.47055 * 59.99722 * 10 8 7 28 28 H 1.08997 * 109.46879 * 180.02562 * 10 8 7 29 29 H 1.08997 * 109.46888 * 60.00391 * 11 10 8 30 30 H 1.08996 * 109.46782 * 180.02562 * 11 10 8 31 31 H 1.09008 * 109.46742 * 180.02562 * 12 11 10 32 32 H 1.08997 * 109.47449 * 299.99856 * 12 11 10 33 33 H 0.97010 * 120.00360 * 179.97438 * 18 17 15 34 34 H 1.09005 * 109.47297 * 299.99592 * 23 13 12 35 35 H 1.08997 * 109.47149 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3826 0.1179 -1.1060 5 6 4.7050 0.0661 -0.6506 6 6 4.6752 -0.0692 0.6960 7 7 3.3810 -0.1102 1.1042 8 6 2.9261 -0.2499 2.4897 9 1 1.8364 -0.2519 2.5159 10 6 3.4535 0.9218 3.3203 11 6 4.9831 0.9253 3.2836 12 6 5.5101 -0.3888 3.8634 13 6 4.9827 -1.5606 3.0328 14 1 5.3212 -1.4566 2.0019 15 6 5.5023 -2.8549 3.6036 16 1 4.8108 -3.6052 3.9574 17 6 6.8605 -3.0812 3.6740 18 7 7.7026 -2.1678 3.2427 19 14 7.5046 -4.6859 4.3809 20 1 6.9928 -5.8229 3.5742 21 1 8.9891 -4.6824 4.3444 22 1 7.0438 -4.8284 5.7853 23 6 3.4532 -1.5640 3.0695 24 1 3.0609 0.2266 -2.1312 25 1 5.5917 0.1276 -1.2640 26 1 5.5395 -0.1339 1.3402 27 1 3.0780 1.8580 2.9072 28 1 3.1154 0.8176 4.3512 29 1 5.3216 1.0293 2.2527 30 1 5.3588 1.7598 3.8757 31 1 6.5999 -0.3861 3.8377 32 1 5.1716 -0.4928 4.8942 33 1 8.6583 -2.3269 3.2926 34 1 3.1146 -1.6680 4.1004 35 1 3.0774 -2.3990 2.4782 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:12 Heat of formation + Delta-G solvation = 69.831493 kcal Electronic energy + Delta-G solvation = -17818.831351 eV Core-core repulsion = 15203.491082 eV Total energy + Delta-G solvation = -2615.340269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.65419 -38.94071 -37.46415 -35.05455 -32.99295 -31.68913 -30.39138 -29.68790 -26.79436 -23.98657 -22.99448 -22.76862 -21.73831 -20.77479 -18.35104 -18.25708 -16.66811 -16.35620 -16.28110 -15.73898 -15.26933 -14.79813 -14.67616 -14.39652 -14.10354 -13.95572 -13.75640 -13.28382 -13.13633 -13.01007 -12.91832 -12.82866 -12.61171 -12.52929 -12.36837 -11.82634 -11.68819 -11.02852 -10.70214 -10.51430 -10.18279 -9.55806 -8.98350 -8.03824 -6.13936 0.53169 1.28106 1.43089 1.45186 1.50925 1.95253 2.15516 2.46508 2.51944 2.95880 3.24183 3.66160 3.85759 4.03750 4.34064 4.39764 4.45297 4.60692 4.67047 4.72904 4.75038 4.88652 5.02116 5.06046 5.16530 5.28082 5.32760 5.37139 5.46510 5.63885 5.72422 5.98070 6.10287 6.18939 6.24795 6.29710 6.45608 6.47305 6.94366 7.52039 8.99353 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.007043 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.523188 B = 3974.391720 C = 4052.405259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.308 3.692 3 C 0.008 3.992 4 C -0.103 4.103 5 C -0.220 4.220 6 C 0.033 3.967 7 N -0.407 5.407 8 C 0.132 3.868 9 H 0.092 0.908 10 C -0.116 4.116 11 C -0.136 4.136 12 C -0.106 4.106 13 C 0.029 3.971 14 H 0.041 0.959 15 C -0.536 4.536 16 H 0.042 0.958 17 C 0.024 3.976 18 N -0.906 5.906 19 Si 0.939 3.061 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.277 1.277 23 C -0.113 4.113 24 H 0.171 0.829 25 H 0.163 0.837 26 H 0.187 0.813 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 6.872 -3.857 8.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.006 4.006 3 C -0.104 4.104 4 C -0.133 4.133 5 C -0.244 4.244 6 C -0.103 4.103 7 N -0.081 5.081 8 C 0.030 3.970 9 H 0.110 0.890 10 C -0.153 4.153 11 C -0.173 4.173 12 C -0.145 4.145 13 C 0.011 3.989 14 H 0.059 0.941 15 C -0.574 4.574 16 H 0.060 0.940 17 C -0.175 4.175 18 N -0.545 5.545 19 Si 0.766 3.234 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.203 1.203 23 C -0.151 4.151 24 H 0.188 0.812 25 H 0.180 0.820 26 H 0.204 0.796 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.991 6.862 -3.486 9.754 hybrid contribution 0.963 -1.240 0.693 1.716 sum -5.028 5.623 -2.793 8.043 Atomic orbital electron populations 1.81247 1.12017 1.12967 1.07312 1.24454 0.90994 0.91812 0.93323 1.15859 0.82786 1.22843 0.88877 1.21516 0.91636 1.02817 0.97294 1.21150 0.98001 1.11719 0.93484 1.22912 0.86971 1.03395 0.97023 1.44301 1.05503 1.52609 1.05681 1.21692 0.98937 0.97848 0.78499 0.88959 1.21808 0.96924 0.96330 1.00281 1.22001 0.94644 0.98230 1.02415 1.21490 1.02034 0.93517 0.97409 1.19062 0.89491 0.93355 0.97008 0.94135 1.21490 0.91781 1.02835 1.41286 0.94007 1.25482 0.97342 0.98894 0.95818 1.69915 1.02424 1.34587 1.47582 0.85913 0.77227 0.81324 0.78926 1.20418 1.20901 1.20251 1.21861 0.99111 0.93947 1.00140 0.81175 0.81980 0.79650 0.90534 0.89316 0.90667 0.91589 0.91646 0.95533 0.92984 0.90950 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.83 18.54 19.00 0.35 -14.48 16 2 C 0.31 9.24 14.93 88.33 1.32 10.56 16 3 C 0.01 0.24 6.75 39.40 0.27 0.50 16 4 C -0.10 -2.64 10.85 22.60 0.25 -2.39 16 5 C -0.22 -6.05 10.81 22.02 0.24 -5.81 16 6 C 0.03 1.07 7.12 83.42 0.59 1.66 16 7 N -0.41 -12.70 2.64 -492.28 -1.30 -14.00 16 8 C 0.13 4.06 3.36 44.99 0.15 4.21 16 9 H 0.09 2.64 7.32 -2.39 -0.02 2.62 16 10 C -0.12 -3.20 5.63 30.60 0.17 -3.03 16 11 C -0.14 -4.32 5.57 30.59 0.17 -4.15 16 12 C -0.11 -4.38 4.77 30.59 0.15 -4.24 16 13 C 0.03 1.27 1.75 -11.54 -0.02 1.25 16 14 H 0.04 1.89 4.24 -2.38 -0.01 1.88 16 15 C -0.54 -27.70 8.56 25.60 0.22 -27.48 16 16 H 0.04 2.18 7.74 -2.91 -0.02 2.16 16 17 C 0.02 1.26 5.30 84.66 0.45 1.71 16 18 N -0.91 -48.08 11.32 21.45 0.24 -47.84 16 19 Si 0.94 41.99 29.54 68.60 2.03 44.01 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 C -0.11 -4.21 4.85 30.59 0.15 -4.06 16 24 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 25 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 26 H 0.19 6.74 3.80 -2.91 -0.01 6.73 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.08 2.40 4.24 -2.39 -0.01 2.39 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 3.11 6.07 -2.38 -0.01 3.10 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.26 13.37 8.31 -92.70 -0.77 12.60 16 34 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -55.27 280.29 6.52 -48.75 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.10 Total: 14.81 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 4.10 Total: -31.26 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -0.70 Total: -76.31 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -55.27 6.52 -48.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.578 kcal (2) G-P(sol) polarization free energy of solvation -55.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds