Wall clock time and date at job start Mon Mar 30 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.37866 * 126.22611 * 273.76578 * 3 2 1 5 5 C 1.39960 * 107.10249 * 180.02562 * 4 3 2 6 6 C 1.35368 * 107.85706 * 359.74417 * 5 4 3 7 7 N 1.35767 * 108.84780 * 0.42430 * 6 5 4 8 8 C 1.46499 * 125.67925 * 179.83593 * 7 6 5 9 9 H 1.08994 * 109.47079 * 179.69191 * 8 7 6 10 10 C 1.53003 * 109.46779 * 299.69088 * 8 7 6 11 11 C 1.53002 * 109.46953 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46836 * 299.99896 * 11 10 8 13 13 C 1.53003 * 109.47265 * 60.00295 * 12 11 10 14 14 H 1.09002 * 109.47031 * 59.99317 * 13 12 11 15 15 C 1.50695 * 109.46927 * 179.97438 * 13 12 11 16 16 H 1.08007 * 119.99951 * 114.44533 * 15 13 12 17 17 C 1.37877 * 120.00232 * 294.44094 * 15 13 12 18 18 N 1.31520 * 120.00090 * 162.15225 * 17 15 13 19 19 Si 1.86799 * 120.00138 * 342.15216 * 17 15 13 20 20 H 1.48499 * 109.47329 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.46824 * 59.99699 * 19 17 15 22 22 H 1.48501 * 109.47249 * 300.00123 * 19 17 15 23 23 C 1.53000 * 109.47082 * 59.69027 * 8 7 6 24 24 H 1.07995 * 126.44825 * 0.02562 * 4 3 2 25 25 H 1.08001 * 126.07258 * 180.02562 * 5 4 3 26 26 H 1.07999 * 125.57552 * 180.26137 * 6 5 4 27 27 H 1.09002 * 109.47031 * 60.00511 * 10 8 7 28 28 H 1.09001 * 109.47341 * 299.99960 * 10 8 7 29 29 H 1.09004 * 109.46977 * 180.02562 * 11 10 8 30 30 H 1.08994 * 109.47151 * 59.99953 * 11 10 8 31 31 H 1.09002 * 109.47654 * 299.99993 * 12 11 10 32 32 H 1.09005 * 109.46846 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99465 * 354.65760 * 18 17 15 34 34 H 1.08996 * 109.47048 * 60.00192 * 23 8 7 35 35 H 1.08994 * 109.47297 * 300.00030 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3828 -0.0720 1.1098 5 6 4.7051 -0.0407 0.6523 6 6 4.6752 0.0427 -0.6985 7 7 3.3809 0.0746 -1.1074 8 6 2.9258 0.1661 -2.4969 9 1 1.8362 0.1669 -2.5230 10 6 3.4519 1.4599 -3.1217 11 6 2.9761 1.5557 -4.5727 12 6 3.5039 0.3565 -5.3627 13 6 2.9778 -0.9373 -4.7379 14 1 1.8880 -0.9363 -4.7636 15 6 3.4971 -2.1185 -5.5164 16 1 4.1785 -2.8150 -5.0505 17 6 3.1024 -2.3101 -6.8235 18 7 3.7953 -3.1044 -7.6100 19 14 1.5833 -1.4415 -7.4774 20 1 1.3749 -1.8123 -8.9001 21 1 1.7689 0.0280 -7.3703 22 1 0.3983 -1.8500 -6.6812 23 6 3.4540 -1.0332 -3.2865 24 1 3.0612 -0.1403 2.1385 25 1 5.5919 -0.0811 1.2674 26 1 5.5395 0.0807 -1.3450 27 1 4.5416 1.4590 -3.0956 28 1 3.0756 2.3143 -2.5591 29 1 3.3513 2.4772 -5.0179 30 1 1.8865 1.5567 -4.5984 31 1 4.5936 0.3554 -5.3370 32 1 3.1645 0.4245 -6.3963 33 1 4.6260 -3.4941 -7.2954 34 1 3.0793 -1.9549 -2.8414 35 1 4.5437 -1.0340 -3.2604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:14 Heat of formation + Delta-G solvation = 56.430545 kcal Electronic energy + Delta-G solvation = -17337.959186 eV Core-core repulsion = 14722.037808 eV Total energy + Delta-G solvation = -2615.921378 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.39023 -37.91033 -36.37149 -33.41465 -32.10457 -30.39135 -29.49583 -28.34817 -24.60968 -22.90802 -22.00495 -21.22159 -20.50486 -18.80102 -18.27761 -17.24073 -15.71383 -14.97010 -14.80840 -14.33351 -13.84332 -13.80383 -13.44507 -13.30238 -13.04175 -12.95548 -12.47105 -12.37540 -12.19171 -12.00043 -11.63943 -11.54240 -10.93832 -10.79855 -10.68403 -10.27758 -9.98255 -9.72033 -9.47656 -8.87819 -8.64663 -8.34490 -8.17547 -6.51111 -4.14889 1.49183 2.31672 2.79455 3.13958 3.31459 3.39049 3.53133 3.55695 3.97325 4.44001 4.68790 4.98102 5.10425 5.15328 5.25291 5.30134 5.43783 5.54743 5.65396 5.81608 5.91809 6.06830 6.07948 6.09362 6.16882 6.25519 6.34940 6.54669 6.68424 6.78690 6.86989 7.06767 7.14386 7.23330 7.38544 7.51566 8.02310 8.30723 8.81455 9.52948 10.86399 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028216 B = 0.006546 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.110219 B = 4276.651813 C = 4468.586861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.285 3.715 3 C 0.040 3.960 4 C -0.121 4.121 5 C -0.212 4.212 6 C 0.039 3.961 7 N -0.406 5.406 8 C 0.121 3.879 9 H 0.091 0.909 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.127 4.127 13 C 0.026 3.974 14 H 0.021 0.979 15 C -0.600 4.600 16 H 0.056 0.944 17 C 0.035 3.965 18 N -0.904 5.904 19 Si 1.037 2.963 20 H -0.286 1.286 21 H -0.272 1.272 22 H -0.284 1.284 23 C -0.102 4.102 24 H 0.144 0.856 25 H 0.144 0.856 26 H 0.170 0.830 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.269 0.731 34 H 0.060 0.940 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 9.314 12.400 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.030 4.030 3 C -0.074 4.074 4 C -0.150 4.150 5 C -0.235 4.235 6 C -0.098 4.098 7 N -0.078 5.078 8 C 0.020 3.980 9 H 0.109 0.891 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.164 4.164 13 C 0.006 3.994 14 H 0.039 0.961 15 C -0.638 4.638 16 H 0.075 0.925 17 C -0.170 4.170 18 N -0.537 5.537 19 Si 0.866 3.134 20 H -0.212 1.212 21 H -0.199 1.199 22 H -0.211 1.211 23 C -0.140 4.140 24 H 0.162 0.838 25 H 0.162 0.838 26 H 0.187 0.813 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.591 9.459 10.673 14.273 hybrid contribution 1.471 -0.228 1.349 2.009 sum 0.880 9.231 12.021 15.182 Atomic orbital electron populations 1.81267 1.11380 1.10961 1.06072 1.24439 0.91087 0.93041 0.94415 1.15750 0.83168 1.20348 0.88086 1.21173 0.92206 1.05068 0.96556 1.20771 0.97022 1.12137 0.93606 1.21997 0.86232 1.05653 0.95951 1.44611 1.05536 1.51724 1.05937 1.22036 1.00226 0.98871 0.76885 0.89088 1.21843 1.01560 0.95095 0.97101 1.21621 1.00669 0.99817 0.93752 1.22152 1.00600 0.94056 0.99632 1.18963 0.95709 0.94513 0.90170 0.96081 1.21917 1.32235 1.10725 0.98901 0.92544 1.25722 1.01647 0.96434 0.93239 1.70840 1.14802 1.30754 1.37318 0.84166 0.76303 0.76547 0.76386 1.21153 1.19851 1.21061 1.21887 1.00856 0.94166 0.97069 0.83794 0.83826 0.81311 0.91036 0.92129 0.92147 0.92444 0.92528 0.91649 0.92152 0.92090 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.01 18.54 41.84 0.78 -6.24 16 2 C 0.28 4.32 14.93 -22.47 -0.34 3.98 16 3 C 0.04 0.55 6.75 -83.50 -0.56 -0.02 16 4 C -0.12 -1.39 10.85 -39.07 -0.42 -1.81 16 5 C -0.21 -2.26 10.81 -39.96 -0.43 -2.69 16 6 C 0.04 0.46 10.30 -16.83 -0.17 0.29 16 7 N -0.41 -5.62 2.64 -106.95 -0.28 -5.90 16 8 C 0.12 1.85 2.78 -67.93 -0.19 1.66 16 9 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 10 C -0.12 -1.63 5.25 -26.73 -0.14 -1.77 16 11 C -0.12 -1.86 5.92 -26.73 -0.16 -2.02 16 12 C -0.13 -2.47 4.89 -26.73 -0.13 -2.60 16 13 C 0.03 0.57 1.69 -91.75 -0.15 0.41 16 14 H 0.02 0.48 6.79 -51.93 -0.35 0.12 16 15 C -0.60 -16.01 8.82 -34.44 -0.30 -16.31 16 16 H 0.06 1.63 7.99 -52.48 -0.42 1.21 16 17 C 0.04 0.98 5.33 -17.82 -0.09 0.88 16 18 N -0.90 -27.01 13.70 55.43 0.76 -26.25 16 19 Si 1.04 24.41 26.37 -169.99 -4.48 19.93 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -5.79 5.61 56.52 0.32 -5.47 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.10 -1.87 4.47 -26.70 -0.12 -1.99 16 24 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 25 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 26 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 27 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.38 4.82 -51.93 -0.25 1.13 16 33 H 0.27 7.98 8.73 -40.82 -0.36 7.63 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.16 7.91 -51.93 -0.41 0.75 16 LS Contribution 290.24 15.07 4.37 4.37 Total: -1.00 -29.15 290.24 -6.92 -36.07 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.84 Total: 0.00 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -3.22 Total: -21.98 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 1.25 Total: -38.39 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.48 Total: 19.93 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.15 -6.92 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.503 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds