Wall clock time and date at job start Mon Mar 30 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.37866 * 126.22611 * 273.76578 * 3 2 1 5 5 C 1.39960 * 107.10249 * 180.02562 * 4 3 2 6 6 C 1.35368 * 107.85706 * 359.74417 * 5 4 3 7 7 N 1.35767 * 108.84780 * 0.42430 * 6 5 4 8 8 C 1.46499 * 125.67925 * 179.83593 * 7 6 5 9 9 H 1.08994 * 109.47079 * 179.69191 * 8 7 6 10 10 C 1.53003 * 109.46779 * 299.69088 * 8 7 6 11 11 C 1.53002 * 109.46953 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46836 * 299.99896 * 11 10 8 13 13 C 1.53003 * 109.47265 * 60.00295 * 12 11 10 14 14 H 1.09002 * 109.47031 * 59.99317 * 13 12 11 15 15 C 1.50695 * 109.46927 * 179.97438 * 13 12 11 16 16 H 1.08007 * 119.99951 * 114.44533 * 15 13 12 17 17 C 1.37877 * 120.00232 * 294.44094 * 15 13 12 18 18 N 1.31520 * 120.00090 * 162.15225 * 17 15 13 19 19 Si 1.86799 * 120.00138 * 342.15216 * 17 15 13 20 20 H 1.48499 * 109.47329 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.46824 * 59.99699 * 19 17 15 22 22 H 1.48501 * 109.47249 * 300.00123 * 19 17 15 23 23 C 1.53000 * 109.47082 * 59.69027 * 8 7 6 24 24 H 1.07995 * 126.44825 * 0.02562 * 4 3 2 25 25 H 1.08001 * 126.07258 * 180.02562 * 5 4 3 26 26 H 1.07999 * 125.57552 * 180.26137 * 6 5 4 27 27 H 1.09002 * 109.47031 * 60.00511 * 10 8 7 28 28 H 1.09001 * 109.47341 * 299.99960 * 10 8 7 29 29 H 1.09004 * 109.46977 * 180.02562 * 11 10 8 30 30 H 1.08994 * 109.47151 * 59.99953 * 11 10 8 31 31 H 1.09002 * 109.47654 * 299.99993 * 12 11 10 32 32 H 1.09005 * 109.46846 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99465 * 354.65760 * 18 17 15 34 34 H 1.08996 * 109.47048 * 60.00192 * 23 8 7 35 35 H 1.08994 * 109.47297 * 300.00030 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3828 -0.0720 1.1098 5 6 4.7051 -0.0407 0.6523 6 6 4.6752 0.0427 -0.6985 7 7 3.3809 0.0746 -1.1074 8 6 2.9258 0.1661 -2.4969 9 1 1.8362 0.1669 -2.5230 10 6 3.4519 1.4599 -3.1217 11 6 2.9761 1.5557 -4.5727 12 6 3.5039 0.3565 -5.3627 13 6 2.9778 -0.9373 -4.7379 14 1 1.8880 -0.9363 -4.7636 15 6 3.4971 -2.1185 -5.5164 16 1 4.1785 -2.8150 -5.0505 17 6 3.1024 -2.3101 -6.8235 18 7 3.7953 -3.1044 -7.6100 19 14 1.5833 -1.4415 -7.4774 20 1 1.3749 -1.8123 -8.9001 21 1 1.7689 0.0280 -7.3703 22 1 0.3983 -1.8500 -6.6812 23 6 3.4540 -1.0332 -3.2865 24 1 3.0612 -0.1403 2.1385 25 1 5.5919 -0.0811 1.2674 26 1 5.5395 0.0807 -1.3450 27 1 4.5416 1.4590 -3.0956 28 1 3.0756 2.3143 -2.5591 29 1 3.3513 2.4772 -5.0179 30 1 1.8865 1.5567 -4.5984 31 1 4.5936 0.3554 -5.3370 32 1 3.1645 0.4245 -6.3963 33 1 4.6260 -3.4941 -7.2954 34 1 3.0793 -1.9549 -2.8414 35 1 4.5437 -1.0340 -3.2604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:14 Heat of formation + Delta-G solvation = 40.854791 kcal Electronic energy + Delta-G solvation = -17338.634602 eV Core-core repulsion = 14722.037808 eV Total energy + Delta-G solvation = -2616.596793 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.39393 -39.29283 -37.55562 -35.21014 -33.50239 -31.98729 -30.47265 -29.56733 -26.44726 -24.09411 -23.09958 -22.60306 -21.73364 -20.17784 -19.92346 -18.76948 -16.81299 -16.30917 -16.06413 -15.63815 -15.24865 -15.16936 -15.04819 -14.45853 -14.36840 -14.13681 -14.08750 -13.57942 -13.20783 -13.16061 -13.02960 -12.98951 -12.50408 -12.27675 -12.21162 -11.82917 -11.68940 -11.32499 -11.09689 -10.73862 -10.46261 -9.65934 -9.13754 -8.72597 -6.36756 0.46217 1.21318 1.42717 1.49483 1.68529 1.90408 2.05713 2.45702 2.47227 2.88917 3.03464 3.50069 3.76352 3.97481 4.18551 4.19793 4.37215 4.42408 4.54746 4.56018 4.58584 4.62978 4.77622 4.93956 5.04993 5.08881 5.21512 5.25735 5.30090 5.35712 5.51184 5.71806 5.89813 6.00974 6.06664 6.11016 6.25494 6.41268 6.57179 7.39141 8.63318 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028216 B = 0.006546 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.110219 B = 4276.651813 C = 4468.586861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.299 3.701 3 C 0.008 3.992 4 C -0.105 4.105 5 C -0.204 4.204 6 C 0.035 3.965 7 N -0.417 5.417 8 C 0.133 3.867 9 H 0.079 0.921 10 C -0.111 4.111 11 C -0.115 4.115 12 C -0.122 4.122 13 C 0.021 3.979 14 H 0.017 0.983 15 C -0.601 4.601 16 H 0.018 0.982 17 C -0.016 4.016 18 N -0.940 5.940 19 Si 1.072 2.928 20 H -0.292 1.292 21 H -0.232 1.232 22 H -0.275 1.275 23 C -0.093 4.093 24 H 0.168 0.832 25 H 0.174 0.826 26 H 0.187 0.813 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.254 0.746 34 H 0.038 0.962 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 11.845 14.116 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.015 4.015 3 C -0.104 4.104 4 C -0.134 4.134 5 C -0.228 4.228 6 C -0.101 4.101 7 N -0.090 5.090 8 C 0.031 3.969 9 H 0.097 0.903 10 C -0.148 4.148 11 C -0.153 4.153 12 C -0.160 4.160 13 C 0.002 3.998 14 H 0.035 0.965 15 C -0.638 4.638 16 H 0.037 0.963 17 C -0.214 4.214 18 N -0.576 5.576 19 Si 0.894 3.106 20 H -0.219 1.219 21 H -0.156 1.156 22 H -0.201 1.201 23 C -0.131 4.131 24 H 0.186 0.814 25 H 0.192 0.808 26 H 0.204 0.796 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.220 12.005 12.432 17.283 hybrid contribution 1.496 -1.125 0.926 2.088 sum 1.276 10.879 13.358 17.275 Atomic orbital electron populations 1.81267 1.12474 1.12803 1.07237 1.24707 0.91420 0.91960 0.93368 1.15947 0.82582 1.22940 0.88926 1.21596 0.92214 1.02495 0.97073 1.21164 0.97659 1.10624 0.93321 1.22508 0.85860 1.04709 0.97012 1.44485 1.06269 1.53176 1.05098 1.21679 0.99442 0.98011 0.77789 0.90262 1.21808 1.02396 0.94669 0.95962 1.21566 1.00795 0.98675 0.94233 1.21970 1.00348 0.94504 0.99175 1.18946 0.95273 0.93752 0.91877 0.96538 1.22204 1.30750 1.11659 0.99221 0.96334 1.27050 1.03720 0.96563 0.94066 1.70961 1.15173 1.33200 1.38291 0.83754 0.73224 0.78139 0.75450 1.21860 1.15631 1.20100 1.21659 1.00838 0.95098 0.95485 0.81437 0.80833 0.79618 0.89686 0.89979 0.89438 0.92219 0.92922 0.93230 0.93764 0.94338 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.21 18.54 19.00 0.35 -14.86 16 2 C 0.30 8.76 14.93 88.33 1.32 10.08 16 3 C 0.01 0.20 6.75 39.40 0.27 0.47 16 4 C -0.10 -2.04 10.85 22.60 0.25 -1.80 16 5 C -0.20 -3.53 10.81 22.02 0.24 -3.29 16 6 C 0.04 0.72 10.30 83.42 0.86 1.58 16 7 N -0.42 -10.54 2.64 -492.27 -1.30 -11.84 16 8 C 0.13 3.81 2.78 44.99 0.13 3.93 16 9 H 0.08 2.47 7.32 -2.39 -0.02 2.46 16 10 C -0.11 -2.65 5.25 30.60 0.16 -2.48 16 11 C -0.11 -3.14 5.92 30.60 0.18 -2.95 16 12 C -0.12 -4.54 4.89 30.60 0.15 -4.39 16 13 C 0.02 0.91 1.69 -11.52 -0.02 0.89 16 14 H 0.02 0.73 6.79 -2.39 -0.02 0.72 16 15 C -0.60 -33.00 8.82 25.60 0.23 -32.77 16 16 H 0.02 1.12 7.99 -2.91 -0.02 1.10 16 17 C -0.02 -0.89 5.33 84.65 0.45 -0.44 16 18 N -0.94 -58.33 13.70 21.45 0.29 -58.04 16 19 Si 1.07 49.09 26.37 68.60 1.81 50.90 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.23 -9.12 5.61 99.48 0.56 -8.57 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 C -0.09 -3.37 4.47 30.61 0.14 -3.23 16 24 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 25 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 26 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 27 H 0.08 1.84 7.92 -2.39 -0.02 1.82 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 1.98 4.82 -2.38 -0.01 1.97 16 33 H 0.25 15.90 8.73 -92.71 -0.81 15.09 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 2.35 7.91 -2.39 -0.02 2.33 16 Total: -1.00 -66.02 290.24 6.38 -59.63 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.89 Total: 8.61 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 4.34 Total: -34.41 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -0.65 Total: -84.73 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 1.81 Total: 50.90 kcal Total: -66.02 6.38 -59.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.486 kcal (2) G-P(sol) polarization free energy of solvation -66.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds