Wall clock time and date at job start Mon Mar 30 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47086 * 269.99979 * 3 2 1 5 5 H 1.48499 * 109.47005 * 29.99507 * 3 2 1 6 6 H 1.48497 * 109.47327 * 149.99723 * 3 2 1 7 7 C 1.37871 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00373 * 185.10297 * 7 2 1 9 9 C 1.50704 * 120.00071 * 5.11279 * 7 2 1 10 10 H 1.08999 * 109.14590 * 25.35948 * 9 7 2 11 11 C 1.52838 * 109.30542 * 265.85947 * 9 7 2 12 12 C 1.53301 * 108.49199 * 188.80473 * 11 9 7 13 13 C 1.52801 * 108.53214 * 69.73136 * 12 11 9 14 14 C 1.50441 * 110.45356 * 308.94341 * 13 12 11 15 15 N 1.32901 * 118.53949 * 197.60432 * 14 13 12 16 16 C 1.31598 * 121.06220 * 180.57890 * 15 14 13 17 17 C 1.50701 * 119.16570 * 179.97438 * 16 15 14 18 18 C 1.52994 * 117.50025 * 188.64252 * 17 16 15 19 19 C 1.52995 * 117.50060 * 120.01650 * 17 16 15 20 20 N 1.31816 * 121.67120 * 359.97438 * 16 15 14 21 21 C 1.32184 * 120.64465 * 359.87056 * 20 16 15 22 22 C 1.37767 * 122.57800 * 17.93093 * 14 13 12 23 23 H 0.97001 * 120.00223 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.63154 * 69.09768 * 11 9 7 25 25 H 1.09000 * 109.79850 * 308.60364 * 11 9 7 26 26 H 1.09003 * 109.62110 * 310.02106 * 12 11 9 27 27 H 1.08996 * 109.62890 * 189.44872 * 12 11 9 28 28 H 1.08999 * 109.30908 * 188.64529 * 13 12 11 29 29 H 1.08999 * 109.14662 * 69.13914 * 13 12 11 30 30 H 1.09006 * 115.54834 * 334.35223 * 17 16 15 31 31 H 1.08998 * 117.49851 * 359.97438 * 18 17 16 32 32 H 1.09010 * 117.49915 * 145.01804 * 18 17 16 33 33 H 1.09000 * 117.49862 * 214.98022 * 19 17 16 34 34 H 1.08998 * 117.49621 * 0.02562 * 19 17 16 35 35 H 1.08005 * 120.36740 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0837 9 6 1.2557 -2.4966 -0.1152 10 1 0.3078 -2.3201 -0.6236 11 6 0.9836 -3.0490 1.2836 12 6 0.4231 -4.4692 1.1451 13 6 1.5403 -5.3858 0.6487 14 6 2.1982 -4.8000 -0.5709 15 7 2.9318 -5.5967 -1.3412 16 6 3.5385 -5.1341 -2.4134 17 6 4.3601 -6.0753 -3.2560 18 6 5.2101 -5.4652 -4.3722 19 6 3.9478 -6.2575 -4.7181 20 7 3.4458 -3.8682 -2.7691 21 6 2.7309 -3.0177 -2.0529 22 6 2.0745 -3.4716 -0.9145 23 1 -0.4850 0.8400 -0.0004 24 1 0.2562 -2.4161 1.7922 25 1 1.9102 -3.0753 1.8569 26 1 -0.3975 -4.4705 0.4276 27 1 0.0665 -4.8182 2.1141 28 1 1.1223 -6.3610 0.3991 29 1 2.2834 -5.5034 1.4375 30 1 4.7620 -6.9441 -2.7345 31 1 5.1748 -4.3830 -4.4974 32 1 6.1718 -5.9324 -4.5852 33 1 4.0788 -7.2459 -5.1585 34 1 3.0825 -5.6962 -5.0706 35 1 2.6577 -1.9815 -2.3487 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:53 Heat of formation + Delta-G solvation = 35.040545 kcal Electronic energy + Delta-G solvation = -17323.818837 eV Core-core repulsion = 14706.969919 eV Total energy + Delta-G solvation = -2616.848918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.22504 -38.76239 -37.15258 -35.50580 -34.09681 -32.04597 -30.87747 -27.10443 -25.92449 -25.15288 -23.22058 -23.04918 -22.31614 -20.25634 -18.85487 -18.26499 -17.54455 -16.77373 -16.20342 -15.83389 -15.49398 -15.04680 -14.67405 -14.57903 -14.13925 -13.95929 -13.31855 -13.08674 -13.00121 -12.81329 -12.44541 -12.30662 -12.29388 -11.99528 -11.76636 -11.60789 -11.38084 -11.18099 -11.13449 -10.89095 -10.61195 -9.99451 -9.69318 -8.18408 -6.28723 0.11363 0.16612 1.39526 1.42253 1.50807 2.39105 2.63676 2.89073 3.07849 3.14289 3.33967 3.71206 3.96504 3.99135 4.16447 4.18078 4.20061 4.24879 4.44057 4.63039 4.77143 4.79586 4.83913 4.91201 4.95481 5.04071 5.09883 5.19422 5.26170 5.35118 5.45446 5.57015 5.64266 5.77080 5.81383 6.18640 6.26386 6.83196 7.23247 7.38524 8.89467 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023218 B = 0.007493 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.676193 B = 3736.131187 C = 4692.697730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.046 0.954 9 C 0.077 3.923 10 H 0.041 0.959 11 C -0.097 4.097 12 C -0.113 4.113 13 C -0.057 4.057 14 C 0.154 3.846 15 N -0.531 5.531 16 C 0.306 3.694 17 C -0.113 4.113 18 C -0.147 4.147 19 C -0.146 4.146 20 N -0.535 5.535 21 C 0.148 3.852 22 C -0.159 4.159 23 H 0.265 0.735 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.193 -11.066 -3.502 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.064 0.936 9 C 0.058 3.942 10 H 0.059 0.941 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.095 4.095 14 C 0.010 3.990 15 N -0.245 5.245 16 C 0.038 3.962 17 C -0.132 4.132 18 C -0.184 4.184 19 C -0.184 4.184 20 N -0.249 5.249 21 C -0.018 4.018 22 C -0.163 4.163 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.156 0.844 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.570 -11.559 -4.034 13.450 hybrid contribution -0.366 2.081 0.586 2.193 sum 5.204 -9.478 -3.448 11.349 Atomic orbital electron populations 1.70019 1.07133 1.27685 1.50683 1.25618 0.95513 1.02067 0.94325 0.85701 0.78747 0.79753 0.78395 1.19975 1.20765 1.19626 1.21190 0.92782 0.91084 1.50980 0.93575 1.17639 0.94095 0.90470 0.92013 0.94145 1.21514 0.99245 0.94931 0.97862 1.21617 0.96830 0.94687 1.01911 1.20378 0.97766 0.99294 0.92042 1.21800 0.92128 0.89462 0.95639 1.68059 1.10253 1.39623 1.06563 1.22636 0.93573 0.89262 0.90697 1.20698 1.03193 0.99453 0.89899 1.23048 0.95999 1.00523 0.98864 1.23023 0.98907 1.03037 0.93415 1.68103 1.19433 1.04250 1.33118 1.23357 0.89135 0.99370 0.89951 1.21891 1.00170 0.96152 0.98136 0.92606 0.93659 0.93647 0.92749 0.88824 0.88229 0.88690 0.84410 0.89237 0.85465 0.85108 0.90429 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.16 12.84 21.45 0.28 -50.89 16 2 C 0.02 1.32 5.45 84.65 0.46 1.78 16 3 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.52 -27.50 7.00 25.60 0.18 -27.33 16 8 H 0.05 2.47 7.82 -2.91 -0.02 2.45 16 9 C 0.08 3.74 2.27 -12.45 -0.03 3.71 16 10 H 0.04 2.21 7.37 -2.39 -0.02 2.20 16 11 C -0.10 -4.11 5.24 30.64 0.16 -3.95 16 12 C -0.11 -3.71 5.97 30.63 0.18 -3.52 16 13 C -0.06 -1.81 5.96 29.70 0.18 -1.63 16 14 C 0.15 6.07 6.62 42.20 0.28 6.35 16 15 N -0.53 -20.42 10.22 -176.65 -1.80 -22.22 16 16 C 0.31 11.42 7.31 138.80 1.01 12.44 16 17 C -0.11 -3.11 6.24 -11.54 -0.07 -3.19 16 18 C -0.15 -3.38 10.01 30.59 0.31 -3.07 16 19 C -0.15 -3.28 10.23 30.59 0.31 -2.96 16 20 N -0.53 -21.71 9.36 -187.72 -1.76 -23.47 16 21 C 0.15 6.53 10.34 84.83 0.88 7.40 16 22 C -0.16 -7.08 5.41 -19.90 -0.11 -7.19 16 23 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 24 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 25 H 0.04 1.90 8.09 -2.39 -0.02 1.88 16 26 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 27 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 30 H 0.14 3.32 8.14 -2.38 -0.02 3.30 16 31 H 0.09 2.46 7.54 -2.39 -0.02 2.44 16 32 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.13 2.07 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.16 7.28 7.39 -2.91 -0.02 7.26 16 Total: -1.00 -60.38 291.07 3.56 -56.82 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.08 Total: 16.50 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 3.74 Total: -21.17 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -3.29 Total: -96.58 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -60.38 3.56 -56.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.865 kcal (2) G-P(sol) polarization free energy of solvation -60.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds