Wall clock time and date at job start Mon Mar 30 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38835 * 119.73618 * 2 1 4 4 C 1.37752 * 120.66629 * 180.21763 * 3 2 1 5 5 C 1.39128 * 119.77807 * 359.51353 * 4 3 2 6 6 N 1.37691 * 133.50743 * 180.15830 * 5 4 3 7 7 H 0.96993 * 125.06407 * 0.27733 * 6 5 4 8 8 C 1.36830 * 109.87046 * 180.28968 * 6 5 4 9 9 C 1.34239 * 109.93252 * 0.02562 * 8 6 5 10 10 C 1.50703 * 126.50041 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.46968 * 179.97438 * 10 9 8 12 12 C 1.50691 * 109.47381 * 59.97041 * 10 9 8 13 13 H 1.08004 * 120.00548 * 268.98374 * 12 10 9 14 14 C 1.37884 * 119.99774 * 88.97785 * 12 10 9 15 15 N 1.31513 * 120.00248 * 6.78781 * 14 12 10 16 16 Si 1.86803 * 119.99856 * 186.78202 * 14 12 10 17 17 H 1.48507 * 109.47014 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47022 * 120.00140 * 16 14 12 19 19 H 1.48500 * 109.47139 * 240.00104 * 16 14 12 20 20 C 1.53004 * 109.47052 * 299.96809 * 10 9 8 21 21 N 1.46890 * 109.47403 * 185.31801 * 20 10 9 22 22 C 1.40667 * 119.33171 * 0.48219 * 5 4 3 23 23 C 1.36627 * 119.73760 * 179.97438 * 2 1 3 24 24 H 1.08993 * 109.47838 * 270.02627 * 1 2 3 25 25 H 1.09001 * 109.47012 * 30.03006 * 1 2 3 26 26 H 1.09004 * 109.47018 * 150.02381 * 1 2 3 27 27 H 1.07995 * 119.66551 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.11018 * 179.68209 * 4 3 2 29 29 H 1.08004 * 125.03015 * 180.02562 * 8 6 5 30 30 H 0.96995 * 119.99890 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.47309 * 305.32661 * 20 10 9 32 32 H 1.09003 * 109.46938 * 65.31984 * 20 10 9 33 33 H 1.00899 * 111.00202 * 56.04512 * 21 20 10 34 34 H 1.00896 * 111.00355 * 180.02562 * 21 20 10 35 35 H 1.07996 * 120.11785 * 0.05301 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5729 1.2279 -0.0045 5 6 4.2834 0.0317 0.0012 6 7 5.6261 -0.2733 0.0017 7 1 6.3453 0.3775 0.0016 8 6 5.7946 -1.6312 0.0021 9 6 4.5986 -2.2407 0.0013 10 6 4.3499 -3.7271 0.0020 11 1 3.2764 -3.9159 0.0015 12 6 4.9671 -4.3391 1.2329 13 1 5.9820 -4.7073 1.2022 14 6 4.2362 -4.4290 2.3986 15 7 2.9615 -4.1052 2.4022 16 14 5.0564 -5.0109 3.9728 17 1 6.4859 -5.3109 3.7045 18 1 4.9595 -3.9467 5.0040 19 1 4.3760 -6.2371 4.4615 20 6 4.9777 -4.3497 -1.2467 21 7 4.6278 -5.7748 -1.3121 22 6 3.5810 -1.1870 0.0011 23 6 2.1847 -1.1863 0.0005 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6459 2.1351 -0.0004 28 1 4.0994 2.1708 -0.0096 29 1 6.7486 -2.1375 0.0029 30 1 2.4473 -4.1688 3.2221 31 1 4.6010 -3.8419 -2.1346 32 1 6.0616 -4.2436 -1.1999 33 1 3.6271 -5.9028 -1.2913 34 1 5.0312 -6.2092 -2.1285 35 1 1.6423 -2.1202 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:16 Heat of formation + Delta-G solvation = 26.041662 kcal Electronic energy + Delta-G solvation = -17367.402716 eV Core-core repulsion = 14750.163577 eV Total energy + Delta-G solvation = -2617.239139 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.90048 -38.15996 -36.82805 -34.12431 -32.94122 -32.07801 -30.62956 -28.18235 -27.02466 -25.97632 -23.33260 -22.88570 -21.65321 -19.89614 -18.65367 -18.23353 -16.76761 -16.55572 -16.10823 -15.77299 -15.36523 -15.07372 -14.76814 -14.64724 -14.16768 -14.09525 -13.97021 -13.29887 -13.05401 -12.86548 -12.58016 -12.52380 -12.37257 -12.25012 -11.88044 -11.64151 -11.37232 -10.85494 -10.41998 -10.16379 -9.23260 -8.78246 -8.23288 -7.91506 -5.98153 0.43632 0.86607 1.40492 1.43071 1.52895 2.14435 2.51622 2.53388 3.14261 3.37619 4.01766 4.04012 4.19852 4.24623 4.48119 4.62688 4.66741 4.69697 4.77185 4.78760 4.93085 5.08216 5.10841 5.24454 5.26192 5.37458 5.57958 5.64512 5.81660 5.92893 5.96347 6.12421 6.26966 6.39602 6.54390 6.63168 6.92451 7.02025 7.12696 7.62593 9.11981 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.008291 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.431810 B = 3376.440244 C = 3622.481065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.137 4.137 3 C -0.105 4.105 4 C -0.136 4.136 5 C 0.071 3.929 6 N -0.589 5.589 7 H 0.425 0.575 8 C 0.024 3.976 9 C -0.138 4.138 10 C 0.103 3.897 11 H 0.019 0.981 12 C -0.476 4.476 13 H 0.048 0.952 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.938 3.062 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.287 1.287 20 C 0.091 3.909 21 N -0.843 5.843 22 C -0.130 4.130 23 C -0.079 4.079 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.177 0.823 30 H 0.252 0.748 31 H 0.003 0.997 32 H 0.059 0.941 33 H 0.335 0.665 34 H 0.339 0.661 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.908 10.107 -6.982 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C -0.124 4.124 4 C -0.156 4.156 5 C -0.037 4.037 6 N -0.194 5.194 7 H 0.264 0.736 8 C -0.100 4.100 9 C -0.146 4.146 10 C 0.083 3.917 11 H 0.037 0.963 12 C -0.515 4.515 13 H 0.067 0.933 14 C -0.184 4.184 15 N -0.558 5.558 16 Si 0.766 3.234 17 H -0.190 1.190 18 H -0.219 1.219 19 H -0.213 1.213 20 C -0.040 4.040 21 N -0.372 5.372 22 C -0.135 4.135 23 C -0.098 4.098 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.075 0.925 27 H 0.172 0.828 28 H 0.164 0.836 29 H 0.195 0.805 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.318 10.091 -6.184 11.908 hybrid contribution 0.081 -0.277 0.348 0.452 sum 1.399 9.814 -5.836 11.503 Atomic orbital electron populations 1.20675 0.89769 1.02998 1.02143 1.19661 0.97262 0.92503 1.04430 1.20949 0.93056 0.97701 1.00703 1.20279 0.94077 0.94794 1.06482 1.18565 0.84523 0.95343 1.05225 1.41499 1.05070 1.06590 1.66271 0.73624 1.21587 0.99393 0.82072 1.06943 1.21153 0.91344 0.96021 1.06041 1.17178 0.96024 0.86046 0.92460 0.96298 1.21097 0.98678 1.36506 0.95195 0.93346 1.25562 0.95181 0.96194 1.01437 1.70080 1.07508 1.51083 1.27170 0.85811 0.79286 0.77309 0.81004 1.19001 1.21882 1.21288 1.21677 0.99234 0.87554 0.95532 1.58447 1.16806 1.14681 1.47261 1.19585 0.93860 0.93554 1.06517 1.20205 0.92528 0.97589 0.99504 0.91756 0.89457 0.92524 0.82831 0.83554 0.80548 0.93952 0.97933 0.92298 0.85300 0.84840 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.72 9.99 71.23 0.71 -2.01 16 2 C -0.14 -4.81 5.85 -20.10 -0.12 -4.93 16 3 C -0.11 -3.13 9.66 22.30 0.22 -2.91 16 4 C -0.14 -4.16 10.08 22.37 0.23 -3.94 16 5 C 0.07 2.69 7.28 39.03 0.28 2.98 16 6 N -0.59 -19.52 6.07 -187.60 -1.14 -20.66 16 7 H 0.42 10.14 8.96 -92.71 -0.83 9.31 16 8 C 0.02 0.94 11.35 83.00 0.94 1.88 16 9 C -0.14 -6.46 5.04 -18.63 -0.09 -6.55 16 10 C 0.10 5.16 2.39 -12.29 -0.03 5.13 16 11 H 0.02 1.09 7.39 -2.39 -0.02 1.07 16 12 C -0.48 -26.22 7.88 25.60 0.20 -26.02 16 13 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 14 C 0.01 0.80 5.45 84.66 0.46 1.26 16 15 N -0.92 -55.42 12.85 21.45 0.28 -55.15 16 16 Si 0.94 45.85 29.54 68.60 2.03 47.88 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 C 0.09 3.80 6.00 86.31 0.52 4.32 16 21 N -0.84 -32.82 9.35 -186.72 -1.75 -34.57 16 22 C -0.13 -5.92 6.35 -20.20 -0.13 -6.05 16 23 C -0.08 -3.51 9.67 22.23 0.22 -3.29 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 26 H 0.06 1.57 8.08 -2.38 -0.02 1.55 16 27 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.18 6.04 8.06 -2.91 -0.02 6.01 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.34 13.15 8.99 -89.69 -0.81 12.34 16 34 H 0.34 10.55 9.08 -89.70 -0.81 9.73 16 35 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -69.17 299.48 1.49 -67.68 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -1.33 Total: 34.95 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.41 Total: -40.13 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -2.61 Total: -110.37 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -69.17 1.49 -67.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.720 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds