Wall clock time and date at job start Mon Mar 30 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30246 * 126.10801 * 2 1 4 4 N 1.39865 * 110.08453 * 179.97438 * 3 2 1 5 5 C 1.46507 * 125.45993 * 179.97438 * 4 3 2 6 6 C 1.37033 * 109.08206 * 0.02562 * 4 3 2 7 7 C 1.39288 * 133.85322 * 180.02562 * 6 4 3 8 8 C 1.36585 * 119.85382 * 179.97438 * 7 6 4 9 9 C 1.38969 * 120.81523 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.68358 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46949 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47238 * 299.99581 * 10 9 8 13 13 C 1.50697 * 109.47178 * 60.00107 * 10 9 8 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00021 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99560 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00032 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47104 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47457 * 119.99350 * 17 15 13 20 20 H 1.48496 * 109.46986 * 239.99711 * 17 15 13 21 21 C 1.36455 * 120.62785 * 0.29473 * 9 8 7 22 22 C 1.39948 * 119.63821 * 359.46274 * 21 9 8 23 23 H 1.08994 * 109.47184 * 90.02211 * 1 2 3 24 24 H 1.09006 * 109.46769 * 210.02026 * 1 2 3 25 25 H 1.08999 * 109.47122 * 330.01365 * 1 2 3 26 26 H 1.09001 * 109.46737 * 270.02563 * 5 4 3 27 27 H 1.09001 * 109.47095 * 30.02075 * 5 4 3 28 28 H 1.08993 * 109.47158 * 150.02297 * 5 4 3 29 29 H 1.08002 * 120.07212 * 0.02562 * 7 6 4 30 30 H 1.08004 * 119.59481 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.46952 * 300.00294 * 12 10 9 32 32 H 1.09001 * 109.46832 * 60.00314 * 12 10 9 33 33 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 34 34 H 0.97002 * 119.99397 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.18142 * 179.72586 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2746 1.0523 0.0000 4 7 3.6189 0.6662 0.0006 5 6 4.7652 1.5786 0.0002 6 6 3.6920 -0.7022 0.0004 7 6 4.7465 -1.6122 0.0012 8 6 4.4873 -2.9532 0.0012 9 6 3.1803 -3.4257 0.0010 10 6 2.9236 -4.9107 0.0016 11 1 1.8490 -5.0936 0.0018 12 6 3.5477 -5.5367 -1.2471 13 6 3.5376 -5.5261 1.2326 14 1 4.0617 -4.9042 1.9432 15 6 3.4311 -6.8833 1.4511 16 7 2.7933 -7.6406 0.5855 17 14 4.1915 -7.6461 2.9774 18 1 4.8475 -6.5870 3.7857 19 1 3.1308 -8.3001 3.7850 20 1 5.2014 -8.6575 2.5745 21 6 2.1274 -2.5578 -0.0053 22 6 2.3670 -1.1790 -0.0002 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8899 0.5142 25 1 -0.3633 0.8901 0.5136 26 1 5.0494 1.8044 -1.0276 27 1 4.4952 2.5014 0.5137 28 1 5.6037 1.1087 0.5142 29 1 5.7669 -1.2582 0.0026 30 1 5.3081 -3.6552 0.0014 31 1 3.1036 -5.0916 -2.1374 32 1 4.6223 -5.3538 -1.2468 33 1 3.3616 -6.6107 -1.2469 34 1 2.7188 -8.5955 0.7391 35 1 1.1146 -2.9328 -0.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:47 Heat of formation + Delta-G solvation = 73.454499 kcal Electronic energy + Delta-G solvation = -17048.076703 eV Core-core repulsion = 14432.893539 eV Total energy + Delta-G solvation = -2615.183164 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83424 -37.33458 -33.96320 -33.75060 -31.09379 -29.72756 -29.35669 -27.97043 -25.16094 -24.89964 -22.39283 -22.01888 -19.78467 -19.21394 -16.58436 -16.40830 -15.58973 -15.30212 -14.84196 -14.33468 -13.71739 -13.44405 -13.34654 -13.01357 -12.71360 -12.46687 -12.27105 -12.15339 -11.80640 -11.47089 -11.15655 -10.94374 -10.70775 -10.57868 -10.38672 -10.20956 -10.02597 -9.43043 -9.37141 -8.89072 -8.36964 -8.03646 -7.13311 -6.00242 -4.06823 1.47230 2.18756 2.68831 2.84633 3.29019 3.37471 3.41773 4.37673 4.51848 4.63742 4.88477 5.07050 5.24274 5.27526 5.30709 5.43261 5.63924 5.69337 5.74699 5.91131 5.97859 6.05362 6.22072 6.48821 6.58103 6.84884 6.87359 7.00137 7.15586 7.20066 7.36384 7.37525 7.62572 7.74288 7.98413 8.00645 8.11467 8.41454 8.96266 9.57932 11.05171 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030761 B = 0.005876 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.022497 B = 4764.077959 C = 5056.922999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.092 3.908 3 N -0.271 5.271 4 N -0.420 5.420 5 C 0.118 3.882 6 C 0.109 3.891 7 C -0.156 4.156 8 C -0.047 4.047 9 C -0.067 4.067 10 C 0.075 3.925 11 H 0.035 0.965 12 C -0.133 4.133 13 C -0.506 4.506 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.061 4.061 22 C -0.173 4.173 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.008 0.992 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.260 0.740 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 13.090 -2.109 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 N -0.085 5.085 4 N -0.210 5.210 5 C -0.024 4.024 6 C -0.003 4.003 7 C -0.178 4.178 8 C -0.068 4.068 9 C -0.068 4.068 10 C 0.057 3.943 11 H 0.053 0.947 12 C -0.190 4.190 13 C -0.544 4.544 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.082 4.082 22 C -0.180 4.180 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.831 14.306 -2.133 14.488 hybrid contribution 0.658 -1.222 0.863 1.635 sum 1.489 13.084 -1.270 13.230 Atomic orbital electron populations 1.20181 0.86184 1.03469 1.03046 1.23436 0.96317 0.89182 0.99598 1.76358 0.87413 1.23808 1.20921 1.47832 1.03511 1.02798 1.66813 1.21573 0.85245 0.93332 1.02255 1.18717 0.95889 0.83881 1.01798 1.19741 0.95990 0.92254 1.09825 1.20765 0.97863 0.93408 0.94750 1.20194 0.91715 0.98486 0.96411 1.17844 0.97396 0.84329 0.94779 0.94703 1.21791 0.97999 1.03959 0.95275 1.21168 1.35002 0.92459 1.05791 0.92449 1.24954 0.95287 0.97259 0.96441 1.69895 1.42328 1.05386 1.35254 0.86555 0.79050 0.79256 0.83286 1.19797 1.21035 1.21048 1.20276 0.99443 0.89433 0.99030 1.19753 0.91397 0.94182 1.12706 0.90358 0.89967 0.90898 0.91993 0.90154 0.90198 0.86808 0.85218 0.97251 0.95361 0.89672 0.93035 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.48 36.01 0.38 -0.47 16 2 C 0.09 1.52 7.43 -80.19 -0.60 0.93 16 3 N -0.27 -4.64 12.40 34.84 0.43 -4.21 16 4 N -0.42 -6.91 4.05 -65.47 -0.27 -7.17 16 5 C 0.12 1.33 11.40 59.85 0.68 2.02 16 6 C 0.11 1.99 6.87 -84.18 -0.58 1.42 16 7 C -0.16 -2.73 9.97 -39.79 -0.40 -3.12 16 8 C -0.05 -0.93 8.61 -39.91 -0.34 -1.27 16 9 C -0.07 -1.42 4.70 -104.99 -0.49 -1.92 16 10 C 0.07 1.83 2.46 -92.92 -0.23 1.60 16 11 H 0.03 0.91 7.84 -51.93 -0.41 0.50 16 12 C -0.13 -3.12 8.78 37.16 0.33 -2.79 16 13 C -0.51 -13.48 8.23 -34.44 -0.28 -13.76 16 14 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.06 -1.21 9.67 -39.58 -0.38 -1.59 16 22 C -0.17 -3.25 6.33 -105.20 -0.67 -3.92 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.13 2.49 7.53 -52.48 -0.40 2.09 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.03 0.62 7.36 -51.93 -0.38 0.24 16 33 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.12 2.20 7.91 -52.49 -0.42 1.78 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -30.38 296.51 -7.27 -37.65 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.83 Total: -1.15 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -2.68 Total: -21.31 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.79 Total: -35.56 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.38 -7.27 -37.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.101 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds