Wall clock time and date at job start Mon Mar 30 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30246 * 126.10801 * 2 1 4 4 N 1.39865 * 110.08453 * 179.97438 * 3 2 1 5 5 C 1.46507 * 125.45993 * 179.97438 * 4 3 2 6 6 C 1.37033 * 109.08206 * 0.02562 * 4 3 2 7 7 C 1.39288 * 133.85322 * 180.02562 * 6 4 3 8 8 C 1.36585 * 119.85382 * 179.97438 * 7 6 4 9 9 C 1.38969 * 120.81523 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.68358 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46949 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47238 * 299.99581 * 10 9 8 13 13 C 1.50697 * 109.47178 * 60.00107 * 10 9 8 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00021 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99560 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00032 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47104 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47457 * 119.99350 * 17 15 13 20 20 H 1.48496 * 109.46986 * 239.99711 * 17 15 13 21 21 C 1.36455 * 120.62785 * 0.29473 * 9 8 7 22 22 C 1.39948 * 119.63821 * 359.46274 * 21 9 8 23 23 H 1.08994 * 109.47184 * 90.02211 * 1 2 3 24 24 H 1.09006 * 109.46769 * 210.02026 * 1 2 3 25 25 H 1.08999 * 109.47122 * 330.01365 * 1 2 3 26 26 H 1.09001 * 109.46737 * 270.02563 * 5 4 3 27 27 H 1.09001 * 109.47095 * 30.02075 * 5 4 3 28 28 H 1.08993 * 109.47158 * 150.02297 * 5 4 3 29 29 H 1.08002 * 120.07212 * 0.02562 * 7 6 4 30 30 H 1.08004 * 119.59481 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.46952 * 300.00294 * 12 10 9 32 32 H 1.09001 * 109.46832 * 60.00314 * 12 10 9 33 33 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 34 34 H 0.97002 * 119.99397 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.18142 * 179.72586 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2746 1.0523 0.0000 4 7 3.6189 0.6662 0.0006 5 6 4.7652 1.5786 0.0002 6 6 3.6920 -0.7022 0.0004 7 6 4.7465 -1.6122 0.0012 8 6 4.4873 -2.9532 0.0012 9 6 3.1803 -3.4257 0.0010 10 6 2.9236 -4.9107 0.0016 11 1 1.8490 -5.0936 0.0018 12 6 3.5477 -5.5367 -1.2471 13 6 3.5376 -5.5261 1.2326 14 1 4.0617 -4.9042 1.9432 15 6 3.4311 -6.8833 1.4511 16 7 2.7933 -7.6406 0.5855 17 14 4.1915 -7.6461 2.9774 18 1 4.8475 -6.5870 3.7857 19 1 3.1308 -8.3001 3.7850 20 1 5.2014 -8.6575 2.5745 21 6 2.1274 -2.5578 -0.0053 22 6 2.3670 -1.1790 -0.0002 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8899 0.5142 25 1 -0.3633 0.8901 0.5136 26 1 5.0494 1.8044 -1.0276 27 1 4.4952 2.5014 0.5137 28 1 5.6037 1.1087 0.5142 29 1 5.7669 -1.2582 0.0026 30 1 5.3081 -3.6552 0.0014 31 1 3.1036 -5.0916 -2.1374 32 1 4.6223 -5.3538 -1.2468 33 1 3.3616 -6.6107 -1.2469 34 1 2.7188 -8.5955 0.7391 35 1 1.1146 -2.9328 -0.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:47 Heat of formation + Delta-G solvation = 57.155342 kcal Electronic energy + Delta-G solvation = -17048.783487 eV Core-core repulsion = 14432.893539 eV Total energy + Delta-G solvation = -2615.889948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.16326 -38.85463 -35.70597 -35.02159 -32.92273 -31.15041 -30.35658 -29.51341 -27.15841 -26.12533 -23.82837 -23.60914 -21.38425 -20.53087 -18.38743 -17.71284 -17.25857 -16.56676 -16.48610 -16.02163 -14.99749 -14.88878 -14.45434 -14.35217 -14.13239 -13.74496 -13.56634 -13.47187 -13.24522 -13.01330 -12.85111 -12.81313 -12.28901 -12.18935 -12.05326 -11.96235 -11.56443 -11.22325 -10.97193 -10.59388 -10.42536 -9.46486 -8.54685 -8.04297 -6.18437 0.07773 0.70782 1.42631 1.45506 1.53250 1.54556 1.56122 2.46150 2.98086 3.22844 3.52481 3.61572 3.81745 4.23634 4.30271 4.41814 4.46136 4.58019 4.66151 4.73173 4.79790 4.81380 4.87341 5.00550 5.06523 5.18631 5.23500 5.33138 5.53579 5.58340 5.65374 5.74074 5.98822 6.12573 6.14893 6.25009 6.42770 6.71120 6.90637 7.49300 8.99254 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030761 B = 0.005876 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.022497 B = 4764.077959 C = 5056.922999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.088 3.912 3 N -0.282 5.282 4 N -0.420 5.420 5 C 0.106 3.894 6 C 0.101 3.899 7 C -0.143 4.143 8 C -0.061 4.061 9 C -0.092 4.092 10 C 0.077 3.923 11 H 0.006 0.994 12 C -0.122 4.122 13 C -0.517 4.517 14 H 0.051 0.949 15 C 0.015 3.985 16 N -0.917 5.917 17 Si 0.951 3.049 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.279 1.279 21 C -0.065 4.065 22 C -0.194 4.194 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.023 0.977 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.261 0.739 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 14.885 -1.721 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 N -0.097 5.097 4 N -0.210 5.210 5 C -0.034 4.034 6 C -0.013 4.013 7 C -0.164 4.164 8 C -0.081 4.081 9 C -0.093 4.093 10 C 0.058 3.942 11 H 0.024 0.976 12 C -0.180 4.180 13 C -0.555 4.555 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.557 5.557 17 Si 0.777 3.223 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.205 1.205 21 C -0.085 4.085 22 C -0.202 4.202 23 H 0.113 0.887 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.167 0.833 30 H 0.146 0.854 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.635 16.135 -1.748 16.311 hybrid contribution 0.399 -1.651 0.716 1.843 sum 2.034 14.484 -1.032 14.663 Atomic orbital electron populations 1.20351 0.83449 1.04591 1.04465 1.24029 0.98082 0.88014 0.98703 1.76348 0.87982 1.24066 1.21292 1.48272 1.04323 1.02671 1.65710 1.21991 0.84236 0.93294 1.03920 1.18963 0.95910 0.85088 1.01365 1.19955 0.97549 0.91122 1.07799 1.20743 0.96922 0.94541 0.95922 1.19954 0.93252 0.96785 0.99310 1.17683 0.95332 0.86798 0.94347 0.97607 1.21631 0.98445 1.02168 0.95739 1.21422 1.34859 0.92741 1.06503 0.93069 1.25674 0.95808 0.97783 0.99078 1.70018 1.43338 1.05565 1.36736 0.85608 0.78261 0.78390 0.80017 1.19422 1.20857 1.20484 1.20290 0.99277 0.90067 0.98883 1.20024 0.92734 0.94257 1.13176 0.88686 0.89431 0.89170 0.90315 0.88671 0.88307 0.83350 0.85380 0.95833 0.94712 0.92280 0.92996 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.48 71.24 0.75 -0.81 16 2 C 0.09 2.79 7.43 44.79 0.33 3.13 16 3 N -0.28 -9.07 12.40 -43.69 -0.54 -9.61 16 4 N -0.42 -12.76 4.05 -361.03 -1.46 -14.23 16 5 C 0.11 2.03 11.40 127.77 1.46 3.49 16 6 C 0.10 3.48 6.87 39.21 0.27 3.75 16 7 C -0.14 -4.69 9.97 22.14 0.22 -4.47 16 8 C -0.06 -2.34 8.61 22.06 0.19 -2.15 16 9 C -0.09 -3.96 4.70 -20.10 -0.09 -4.05 16 10 C 0.08 3.85 2.46 -12.29 -0.03 3.82 16 11 H 0.01 0.32 7.84 -2.39 -0.02 0.30 16 12 C -0.12 -5.87 8.78 71.98 0.63 -5.24 16 13 C -0.52 -28.03 8.23 25.60 0.21 -27.82 16 14 H 0.05 2.77 7.60 -2.91 -0.02 2.75 16 15 C 0.02 0.82 5.30 84.66 0.45 1.27 16 16 N -0.92 -52.14 11.32 21.45 0.24 -51.90 16 17 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 C -0.06 -2.57 9.67 22.27 0.22 -2.36 16 22 C -0.19 -7.12 6.33 -20.24 -0.13 -7.24 16 23 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.13 4.87 7.53 -2.91 -0.02 4.85 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 1.56 7.36 -2.39 -0.02 1.55 16 33 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 34 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 35 H 0.12 4.63 7.91 -2.91 -0.02 4.61 16 Total: -1.00 -65.14 296.51 5.81 -59.33 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.07 Total: 9.88 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 4.47 Total: -38.68 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.76 Total: -75.74 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.14 5.81 -59.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.486 kcal (2) G-P(sol) polarization free energy of solvation -65.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds