Wall clock time and date at job start Mon Mar 30 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30234 * 126.10990 * 2 1 4 4 N 1.39872 * 110.08756 * 180.02562 * 3 2 1 5 5 C 1.46505 * 125.46152 * 179.97438 * 4 3 2 6 6 C 1.37038 * 109.07864 * 0.02562 * 4 3 2 7 7 C 1.39286 * 133.85651 * 179.97438 * 6 4 3 8 8 C 1.36589 * 119.85146 * 180.02562 * 7 6 4 9 9 C 1.38966 * 120.82164 * 359.71190 * 8 7 6 10 10 C 1.36468 * 120.61954 * 0.57057 * 9 8 7 11 11 C 1.50702 * 120.17763 * 179.73018 * 10 9 8 12 12 H 1.08998 * 109.47005 * 173.80625 * 11 10 9 13 13 C 1.53000 * 109.47228 * 53.80475 * 11 10 9 14 14 C 1.50700 * 109.47208 * 293.80365 * 11 10 9 15 15 H 1.08003 * 119.99610 * 5.20932 * 14 11 10 16 16 C 1.37876 * 119.99969 * 185.21112 * 14 11 10 17 17 N 1.31521 * 119.99630 * 187.17139 * 16 14 11 18 18 Si 1.86794 * 120.00129 * 7.17428 * 16 14 11 19 19 H 1.48500 * 109.47163 * 269.99924 * 18 16 14 20 20 H 1.48499 * 109.47256 * 150.00179 * 18 16 14 21 21 H 1.48505 * 109.47197 * 29.99796 * 18 16 14 22 22 C 1.39942 * 119.63704 * 359.45277 * 10 9 8 23 23 H 1.09005 * 109.47044 * 263.77099 * 1 2 3 24 24 H 1.09000 * 109.47200 * 23.77046 * 1 2 3 25 25 H 1.09009 * 109.47506 * 143.77308 * 1 2 3 26 26 H 1.08997 * 109.47153 * 270.03988 * 5 4 3 27 27 H 1.08999 * 109.47050 * 30.04074 * 5 4 3 28 28 H 1.09000 * 109.47011 * 150.04340 * 5 4 3 29 29 H 1.07998 * 120.07328 * 0.02562 * 7 6 4 30 30 H 1.08005 * 119.58781 * 180.02562 * 8 7 6 31 31 H 1.07996 * 119.68852 * 180.29770 * 9 8 7 32 32 H 1.09000 * 109.46696 * 54.27099 * 13 11 10 33 33 H 1.09000 * 109.46722 * 174.26739 * 13 11 10 34 34 H 1.08998 * 109.46914 * 294.26882 * 13 11 10 35 35 H 0.96992 * 120.00143 * 354.92548 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0521 0.0000 4 7 3.6189 0.6661 -0.0006 5 6 4.7652 1.5784 -0.0013 6 6 3.6919 -0.7023 -0.0016 7 6 4.7463 -1.6125 -0.0029 8 6 4.4869 -2.9535 -0.0041 9 6 3.1800 -3.4259 0.0019 10 6 2.1271 -2.5578 -0.0025 11 6 0.7138 -3.0810 -0.0020 12 1 0.0183 -2.2487 0.1050 13 6 0.5301 -4.0526 1.1656 14 6 0.4432 -3.7981 -1.2995 15 1 1.2406 -3.9414 -2.0137 16 6 -0.8223 -4.2711 -1.5748 17 7 -1.0284 -5.0176 -2.6378 18 14 -2.2440 -3.8516 -0.4382 19 1 -2.3558 -4.8890 0.6184 20 1 -3.5055 -3.8037 -1.2202 21 1 -2.0010 -2.5285 0.1910 22 6 2.3669 -1.1790 -0.0015 23 1 -0.3633 -0.1115 1.0216 24 1 -0.3633 0.9405 -0.4142 25 1 -0.3634 -0.8290 -0.6074 26 1 5.0485 1.8051 -1.0291 27 1 4.4957 2.5008 0.5131 28 1 5.6042 1.1081 0.5115 29 1 5.7667 -1.2586 -0.0029 30 1 5.3077 -3.6555 -0.0047 31 1 2.9959 -4.4901 0.0057 32 1 0.8236 -3.5637 2.0946 33 1 -0.5161 -4.3523 1.2275 34 1 1.1517 -4.9336 1.0064 35 1 -0.3074 -5.1747 -3.2673 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:49 Heat of formation + Delta-G solvation = 58.723545 kcal Electronic energy + Delta-G solvation = -17613.224752 eV Core-core repulsion = 14997.402806 eV Total energy + Delta-G solvation = -2615.821946 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.25106 -38.68257 -36.39344 -34.84751 -33.40235 -30.80901 -30.44494 -30.00211 -26.69936 -26.19502 -24.24626 -23.13660 -21.82333 -20.00988 -19.42461 -17.88309 -17.49150 -16.53419 -16.09933 -16.06305 -15.44298 -14.97212 -14.54892 -14.45029 -14.31884 -13.81863 -13.63695 -13.50966 -13.33956 -13.17034 -12.99717 -12.73933 -12.25184 -12.23314 -11.84121 -11.72516 -11.50062 -11.20343 -10.86944 -10.56914 -10.44422 -9.53435 -8.78244 -8.48561 -6.31583 0.07873 0.64356 1.47526 1.50161 1.53237 1.57802 1.74706 2.53824 2.92608 3.16536 3.47092 3.64823 3.80019 4.15818 4.28552 4.37275 4.41095 4.46373 4.54425 4.64016 4.68786 4.72201 4.79869 4.80334 4.93730 4.98817 5.13063 5.22299 5.27564 5.46136 5.55732 5.67761 5.89914 6.00110 6.10011 6.14123 6.23912 6.61797 6.67732 7.46660 8.72152 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.008265 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.673991 B = 3386.987620 C = 3946.597957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.096 3.904 3 N -0.283 5.283 4 N -0.420 5.420 5 C 0.106 3.894 6 C 0.115 3.885 7 C -0.162 4.162 8 C -0.060 4.060 9 C -0.182 4.182 10 C 0.025 3.975 11 C 0.024 3.976 12 H 0.057 0.943 13 C -0.139 4.139 14 C -0.572 4.572 15 H 0.013 0.987 16 C -0.023 4.023 17 N -0.949 5.949 18 Si 1.082 2.918 19 H -0.265 1.265 20 H -0.295 1.295 21 H -0.236 1.236 22 C -0.211 4.211 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.114 0.886 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 10.536 9.270 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 N -0.098 5.098 4 N -0.209 5.209 5 C -0.034 4.034 6 C 0.001 3.999 7 C -0.184 4.184 8 C -0.081 4.081 9 C -0.202 4.202 10 C 0.023 3.977 11 C 0.005 3.995 12 H 0.075 0.925 13 C -0.196 4.196 14 C -0.610 4.610 15 H 0.031 0.969 16 C -0.220 4.220 17 N -0.587 5.587 18 Si 0.904 3.096 19 H -0.190 1.190 20 H -0.222 1.222 21 H -0.159 1.159 22 C -0.219 4.219 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.173 0.827 30 H 0.175 0.825 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.724 11.704 9.536 17.437 hybrid contribution 1.752 -1.043 -1.106 2.319 sum 10.476 10.661 8.431 17.160 Atomic orbital electron populations 1.20545 0.84917 1.04210 1.04449 1.23817 0.97573 0.88678 0.98030 1.76363 0.88146 1.23588 1.21714 1.48345 1.04253 1.02842 1.65440 1.22021 0.84155 0.93358 1.03854 1.19139 0.95754 0.85212 0.99822 1.19986 0.97291 0.91415 1.09685 1.21029 0.96591 0.95264 0.95173 1.20665 0.92775 0.99625 1.07106 1.19526 0.97128 0.90281 0.90774 1.18559 0.90817 0.95788 0.94315 0.92477 1.22034 1.00517 0.99600 0.97447 1.22113 0.96261 1.39346 1.03296 0.96867 1.27193 1.02680 0.92305 0.99781 1.70954 1.36366 1.37110 1.14224 0.83609 0.72458 0.79320 0.74254 1.19029 1.22237 1.15941 1.19994 0.92906 0.94130 1.14857 0.88368 0.88943 0.90358 0.90647 0.88657 0.87562 0.82678 0.82482 0.86831 0.92676 0.93685 0.93567 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 9.19 71.24 0.65 -2.07 16 2 C 0.10 3.65 7.43 44.79 0.33 3.99 16 3 N -0.28 -10.24 12.40 -43.70 -0.54 -10.78 16 4 N -0.42 -13.38 4.05 -361.04 -1.46 -14.84 16 5 C 0.11 2.05 11.40 127.77 1.46 3.51 16 6 C 0.12 4.06 6.87 39.21 0.27 4.33 16 7 C -0.16 -4.72 9.97 22.14 0.22 -4.50 16 8 C -0.06 -1.85 9.96 22.06 0.22 -1.63 16 9 C -0.18 -7.13 8.85 22.03 0.20 -6.94 16 10 C 0.03 1.10 4.74 -19.86 -0.09 1.00 16 11 C 0.02 1.11 2.03 -12.29 -0.02 1.08 16 12 H 0.06 2.55 2.74 -2.39 -0.01 2.54 16 13 C -0.14 -5.73 8.43 71.98 0.61 -5.12 16 14 C -0.57 -32.28 8.69 25.60 0.22 -32.05 16 15 H 0.01 0.83 7.93 -2.91 -0.02 0.81 16 16 C -0.02 -1.35 5.42 84.65 0.46 -0.89 16 17 N -0.95 -59.94 13.70 21.45 0.29 -59.64 16 18 Si 1.08 48.94 25.39 68.60 1.74 50.68 16 19 H -0.26 -11.13 6.78 99.48 0.67 -10.46 16 20 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.24 -9.09 6.37 99.48 0.63 -8.45 16 22 C -0.21 -8.66 6.15 -20.24 -0.12 -8.78 16 23 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 24 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.08 2.93 6.18 -2.38 -0.01 2.92 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 31 H 0.11 4.57 7.27 -2.91 -0.02 4.55 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.83 4.53 -2.39 -0.01 1.82 16 34 H 0.05 1.92 7.28 -2.39 -0.02 1.90 16 35 H 0.25 16.06 8.72 -92.71 -0.81 15.26 16 Total: -1.00 -71.78 284.52 5.37 -66.40 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.95 Total: 16.25 kcal Atomic # 6 Polarization: -52.47 SS G_CDS: 4.39 Total: -48.08 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -1.71 Total: -85.26 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.74 Total: 50.68 kcal Total: -71.78 5.37 -66.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.128 kcal (2) G-P(sol) polarization free energy of solvation -71.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds