Wall clock time and date at job start Mon Mar 30 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30242 * 126.11261 * 2 1 4 4 N 1.39870 * 110.09060 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.46462 * 179.97438 * 4 3 2 6 6 C 1.37042 * 109.07450 * 359.97438 * 4 3 2 7 7 C 1.39288 * 133.84856 * 180.02562 * 6 4 3 8 8 C 1.36589 * 119.85424 * 179.97438 * 7 6 4 9 9 C 1.38971 * 120.81272 * 359.97438 * 8 7 6 10 10 C 1.36466 * 120.62919 * 0.02562 * 9 8 7 11 11 C 1.50695 * 120.18313 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46934 * 186.07882 * 11 10 9 13 13 C 1.52997 * 109.47109 * 306.08207 * 11 10 9 14 14 C 1.50699 * 109.47014 * 66.08245 * 11 10 9 15 15 H 1.08005 * 120.00330 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99951 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00289 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00134 * 179.72217 * 16 14 11 19 19 H 1.48504 * 109.46992 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47430 * 119.99739 * 18 16 14 21 21 H 1.48502 * 109.47424 * 240.00299 * 18 16 14 22 22 C 1.39952 * 119.63500 * 0.27290 * 10 9 8 23 23 H 1.09000 * 109.47372 * 96.41779 * 1 2 3 24 24 H 1.09000 * 109.47428 * 216.42312 * 1 2 3 25 25 H 1.09000 * 109.46657 * 336.42374 * 1 2 3 26 26 H 1.08998 * 109.46886 * 270.02127 * 5 4 3 27 27 H 1.08993 * 109.47235 * 30.01709 * 5 4 3 28 28 H 1.09001 * 109.47479 * 150.02418 * 5 4 3 29 29 H 1.08008 * 120.07521 * 359.97438 * 7 6 4 30 30 H 1.07998 * 119.59352 * 179.97438 * 8 7 6 31 31 H 1.07998 * 119.68527 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47489 * 60.00014 * 13 11 10 33 33 H 1.09000 * 109.47320 * 179.97438 * 13 11 10 34 34 H 1.08999 * 109.46875 * 300.00081 * 13 11 10 35 35 H 0.96998 * 120.00800 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2746 1.0522 0.0000 4 7 3.6189 0.6661 -0.0006 5 6 4.7652 1.5784 -0.0013 6 6 3.6919 -0.7024 -0.0004 7 6 4.7464 -1.6124 -0.0003 8 6 4.4871 -2.9535 0.0004 9 6 3.1801 -3.4258 0.0016 10 6 2.1271 -2.5578 0.0016 11 6 0.7139 -3.0810 0.0023 12 1 0.0184 -2.2489 -0.1067 13 6 0.5303 -4.0554 -1.1630 14 6 0.4433 -3.7950 1.3015 15 1 1.2174 -3.8635 2.0516 16 6 -0.7922 -4.3618 1.5323 17 7 -1.7347 -4.2790 0.6189 18 14 -1.1252 -5.2536 3.1396 19 1 0.0914 -5.2117 3.9902 20 1 -2.2490 -4.5916 3.8494 21 1 -1.4823 -6.6670 2.8568 22 6 2.3669 -1.1790 -0.0055 23 1 -0.3634 -0.1149 -1.0212 24 1 -0.3634 -0.8269 0.6102 25 1 -0.3632 0.9419 0.4110 26 1 5.0488 1.8047 -1.0291 27 1 4.4957 2.5009 0.5127 28 1 5.6041 1.1082 0.5118 29 1 5.7668 -1.2585 -0.0008 30 1 5.3079 -3.6554 0.0001 31 1 2.9961 -4.4900 0.0026 32 1 1.2258 -4.8875 -1.0540 33 1 -0.4918 -4.4342 -1.1622 34 1 0.7260 -3.5389 -2.1027 35 1 -2.6038 -4.6781 0.7810 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:51 Heat of formation + Delta-G solvation = 77.992606 kcal Electronic energy + Delta-G solvation = -17524.738355 eV Core-core repulsion = 14909.751979 eV Total energy + Delta-G solvation = -2614.986377 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75396 -37.05379 -34.62691 -33.26730 -31.19517 -29.36797 -28.97545 -28.01392 -25.12283 -24.88104 -22.62398 -21.64386 -20.20977 -18.48525 -16.50066 -16.24128 -15.91212 -15.16991 -14.67607 -14.46736 -13.82701 -13.30194 -13.19023 -12.79246 -12.54008 -12.25527 -12.15029 -11.92003 -11.45781 -11.31802 -11.15060 -11.00363 -10.85722 -10.61124 -10.26247 -10.25390 -9.85451 -9.36249 -9.21874 -8.75006 -8.33854 -7.97813 -7.10414 -6.01370 -4.07421 1.59697 2.20369 2.82340 3.01104 3.29185 3.37791 3.42618 4.38643 4.54925 4.77325 5.11699 5.19376 5.29562 5.31077 5.44770 5.51612 5.63907 5.80725 6.06196 6.14616 6.19270 6.25995 6.40601 6.54696 6.71578 6.87782 7.00228 7.02071 7.18090 7.21836 7.36308 7.50348 7.66824 7.74544 7.99649 8.09109 8.18548 8.38913 8.95108 9.56751 11.03952 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.007485 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.498096 B = 3739.768990 C = 4124.129151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.120 3.880 3 N -0.280 5.280 4 N -0.424 5.424 5 C 0.120 3.880 6 C 0.127 3.873 7 C -0.181 4.181 8 C -0.063 4.063 9 C -0.171 4.171 10 C 0.053 3.947 11 C 0.056 3.944 12 H 0.053 0.947 13 C -0.132 4.132 14 C -0.503 4.503 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.180 4.180 23 H 0.079 0.921 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.029 0.971 33 H 0.086 0.914 34 H 0.008 0.992 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 6.271 -2.122 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 N -0.094 5.094 4 N -0.213 5.213 5 C -0.023 4.023 6 C 0.014 3.986 7 C -0.203 4.203 8 C -0.083 4.083 9 C -0.190 4.190 10 C 0.051 3.949 11 C 0.038 3.962 12 H 0.071 0.929 13 C -0.190 4.190 14 C -0.541 4.541 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.188 4.188 23 H 0.098 0.902 24 H 0.125 0.875 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.283 7.633 -2.151 12.210 hybrid contribution 0.092 -1.271 0.899 1.560 sum 9.376 6.362 -1.252 11.399 Atomic orbital electron populations 1.20507 0.85666 1.04001 1.03855 1.23567 0.96651 0.88791 0.96697 1.76442 0.87025 1.23674 1.22234 1.47881 1.03796 1.02602 1.67050 1.21530 0.85250 0.93394 1.02079 1.18806 0.95930 0.84121 0.99753 1.19487 0.95781 0.92134 1.12879 1.20671 0.97069 0.94073 0.96526 1.20568 0.91251 1.00341 1.06844 1.20008 0.98711 0.89230 0.86998 1.18201 0.86595 0.96030 0.95374 0.92931 1.21802 1.03742 0.98466 0.95006 1.21104 0.97884 1.34661 1.00489 0.92453 1.24917 0.96099 0.96160 0.96594 1.69881 1.04101 1.45401 1.33398 0.86556 0.78265 0.79468 0.83890 1.19802 1.21019 1.21030 1.19771 0.91010 0.94289 1.13708 0.90215 0.87503 0.91410 0.92147 0.90168 0.90450 0.87103 0.86422 0.85670 0.95171 0.89510 0.97280 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 9.18 36.00 0.33 -1.13 16 2 C 0.12 2.43 7.43 -80.19 -0.60 1.83 16 3 N -0.28 -5.46 12.40 34.84 0.43 -5.02 16 4 N -0.42 -7.54 4.05 -65.47 -0.27 -7.81 16 5 C 0.12 1.44 11.40 59.85 0.68 2.13 16 6 C 0.13 2.44 6.87 -84.17 -0.58 1.86 16 7 C -0.18 -3.02 9.97 -39.79 -0.40 -3.42 16 8 C -0.06 -1.06 9.96 -39.91 -0.40 -1.46 16 9 C -0.17 -3.41 8.85 -39.95 -0.35 -3.76 16 10 C 0.05 1.17 4.74 -104.62 -0.50 0.68 16 11 C 0.06 1.35 2.45 -92.93 -0.23 1.13 16 12 H 0.05 1.30 4.28 -51.93 -0.22 1.08 16 13 C -0.13 -3.11 8.71 37.16 0.32 -2.78 16 14 C -0.50 -13.30 8.33 -34.44 -0.29 -13.59 16 15 H 0.06 1.55 7.73 -52.48 -0.41 1.14 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.17 11.32 55.43 0.63 -23.54 16 18 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.18 -3.86 6.15 -105.20 -0.65 -4.50 16 23 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.11 2.14 6.20 -51.93 -0.32 1.82 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 2.47 7.19 -52.49 -0.38 2.09 16 32 H 0.03 0.67 7.07 -51.93 -0.37 0.30 16 33 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -29.67 289.77 -7.12 -36.79 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.53 Total: 0.87 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -2.74 Total: -21.44 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.79 Total: -36.37 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.67 -7.12 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.786 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds