Wall clock time and date at job start Mon Mar 30 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30242 * 126.11261 * 2 1 4 4 N 1.39870 * 110.09060 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.46462 * 179.97438 * 4 3 2 6 6 C 1.37042 * 109.07450 * 359.97438 * 4 3 2 7 7 C 1.39288 * 133.84856 * 180.02562 * 6 4 3 8 8 C 1.36589 * 119.85424 * 179.97438 * 7 6 4 9 9 C 1.38971 * 120.81272 * 359.97438 * 8 7 6 10 10 C 1.36466 * 120.62919 * 0.02562 * 9 8 7 11 11 C 1.50695 * 120.18313 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46934 * 186.07882 * 11 10 9 13 13 C 1.52997 * 109.47109 * 306.08207 * 11 10 9 14 14 C 1.50699 * 109.47014 * 66.08245 * 11 10 9 15 15 H 1.08005 * 120.00330 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99951 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00289 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00134 * 179.72217 * 16 14 11 19 19 H 1.48504 * 109.46992 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47430 * 119.99739 * 18 16 14 21 21 H 1.48502 * 109.47424 * 240.00299 * 18 16 14 22 22 C 1.39952 * 119.63500 * 0.27290 * 10 9 8 23 23 H 1.09000 * 109.47372 * 96.41779 * 1 2 3 24 24 H 1.09000 * 109.47428 * 216.42312 * 1 2 3 25 25 H 1.09000 * 109.46657 * 336.42374 * 1 2 3 26 26 H 1.08998 * 109.46886 * 270.02127 * 5 4 3 27 27 H 1.08993 * 109.47235 * 30.01709 * 5 4 3 28 28 H 1.09001 * 109.47479 * 150.02418 * 5 4 3 29 29 H 1.08008 * 120.07521 * 359.97438 * 7 6 4 30 30 H 1.07998 * 119.59352 * 179.97438 * 8 7 6 31 31 H 1.07998 * 119.68527 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47489 * 60.00014 * 13 11 10 33 33 H 1.09000 * 109.47320 * 179.97438 * 13 11 10 34 34 H 1.08999 * 109.46875 * 300.00081 * 13 11 10 35 35 H 0.96998 * 120.00800 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2746 1.0522 0.0000 4 7 3.6189 0.6661 -0.0006 5 6 4.7652 1.5784 -0.0013 6 6 3.6919 -0.7024 -0.0004 7 6 4.7464 -1.6124 -0.0003 8 6 4.4871 -2.9535 0.0004 9 6 3.1801 -3.4258 0.0016 10 6 2.1271 -2.5578 0.0016 11 6 0.7139 -3.0810 0.0023 12 1 0.0184 -2.2489 -0.1067 13 6 0.5303 -4.0554 -1.1630 14 6 0.4433 -3.7950 1.3015 15 1 1.2174 -3.8635 2.0516 16 6 -0.7922 -4.3618 1.5323 17 7 -1.7347 -4.2790 0.6189 18 14 -1.1252 -5.2536 3.1396 19 1 0.0914 -5.2117 3.9902 20 1 -2.2490 -4.5916 3.8494 21 1 -1.4823 -6.6670 2.8568 22 6 2.3669 -1.1790 -0.0055 23 1 -0.3634 -0.1149 -1.0212 24 1 -0.3634 -0.8269 0.6102 25 1 -0.3632 0.9419 0.4110 26 1 5.0488 1.8047 -1.0291 27 1 4.4957 2.5009 0.5127 28 1 5.6041 1.1082 0.5118 29 1 5.7668 -1.2585 -0.0008 30 1 5.3079 -3.6554 0.0001 31 1 2.9961 -4.4900 0.0026 32 1 1.2258 -4.8875 -1.0540 33 1 -0.4918 -4.4342 -1.1622 34 1 0.7260 -3.5389 -2.1027 35 1 -2.6038 -4.6781 0.7810 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:50 Heat of formation + Delta-G solvation = 61.915631 kcal Electronic energy + Delta-G solvation = -17525.435505 eV Core-core repulsion = 14909.751979 eV Total energy + Delta-G solvation = -2615.683527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.17405 -38.55652 -36.27156 -34.79230 -32.96373 -30.73621 -30.35909 -29.61194 -27.14605 -26.13571 -24.24214 -23.07552 -21.83294 -19.97248 -18.26411 -17.76265 -17.42581 -16.52120 -16.46647 -15.92990 -15.31564 -14.84621 -14.51947 -14.38705 -13.93594 -13.60413 -13.52963 -13.39268 -13.16141 -12.92309 -12.78998 -12.73614 -12.52326 -12.24710 -12.09762 -11.87565 -11.57323 -11.08236 -10.93409 -10.41693 -10.32620 -9.44698 -8.53259 -8.03172 -6.15759 0.15526 0.73051 1.42291 1.45514 1.54417 1.56675 1.58600 2.46984 3.03159 3.24185 3.52892 3.73636 3.87732 4.27102 4.34014 4.44128 4.49241 4.59641 4.66606 4.71411 4.76150 4.82190 4.91700 4.99060 5.05880 5.26265 5.28851 5.38375 5.54499 5.64131 5.67742 5.78006 6.04679 6.15684 6.21560 6.29838 6.43692 6.73470 6.91172 7.50509 9.00406 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.007485 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.498096 B = 3739.768990 C = 4124.129151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.096 3.904 3 N -0.287 5.287 4 N -0.421 5.421 5 C 0.106 3.894 6 C 0.116 3.884 7 C -0.165 4.165 8 C -0.058 4.058 9 C -0.181 4.181 10 C 0.022 3.978 11 C 0.055 3.945 12 H 0.040 0.960 13 C -0.122 4.122 14 C -0.514 4.514 15 H 0.044 0.956 16 C 0.021 3.979 17 N -0.911 5.911 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.279 1.279 22 C -0.213 4.213 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.118 0.882 32 H 0.032 0.968 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.806 6.880 -1.839 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 N -0.102 5.102 4 N -0.210 5.210 5 C -0.033 4.033 6 C 0.001 3.999 7 C -0.187 4.187 8 C -0.078 4.078 9 C -0.201 4.201 10 C 0.019 3.981 11 C 0.037 3.963 12 H 0.058 0.942 13 C -0.179 4.179 14 C -0.552 4.552 15 H 0.062 0.938 16 C -0.177 4.177 17 N -0.551 5.551 18 Si 0.773 3.227 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.205 1.205 22 C -0.221 4.221 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.172 0.828 30 H 0.177 0.823 31 H 0.136 0.864 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.823 8.262 -1.869 14.545 hybrid contribution -0.574 -1.380 0.788 1.690 sum 11.249 6.882 -1.081 13.232 Atomic orbital electron populations 1.20389 0.85147 1.03822 1.03800 1.23777 0.97392 0.88927 0.97906 1.76351 0.88241 1.23584 1.21999 1.48334 1.04149 1.02937 1.65603 1.22004 0.84122 0.93237 1.03957 1.19156 0.95750 0.85117 0.99866 1.19980 0.97122 0.91501 1.10109 1.21048 0.96643 0.95146 0.94975 1.20688 0.92525 0.99791 1.07087 1.19838 0.97877 0.90241 0.90125 1.18073 0.88410 0.95396 0.94426 0.94232 1.21646 1.02150 0.98553 0.95595 1.21293 0.97689 1.34917 1.01315 0.93768 1.25558 0.95993 0.96910 0.99288 1.69986 1.04324 1.46066 1.34733 0.85683 0.77913 0.78536 0.80592 1.19827 1.20696 1.20485 1.20034 0.92779 0.94295 1.14976 0.89605 0.90301 0.89363 0.90243 0.89016 0.87740 0.82759 0.82287 0.86369 0.94904 0.91908 0.96181 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.71 9.18 71.23 0.65 -2.06 16 2 C 0.10 3.94 7.43 44.79 0.33 4.27 16 3 N -0.29 -10.93 12.40 -43.70 -0.54 -11.47 16 4 N -0.42 -13.97 4.05 -361.05 -1.46 -15.43 16 5 C 0.11 2.17 11.40 127.77 1.46 3.62 16 6 C 0.12 4.19 6.87 39.21 0.27 4.46 16 7 C -0.17 -4.89 9.97 22.14 0.22 -4.67 16 8 C -0.06 -1.77 9.96 22.06 0.22 -1.55 16 9 C -0.18 -7.13 8.85 22.03 0.20 -6.93 16 10 C 0.02 0.97 4.74 -19.86 -0.09 0.87 16 11 C 0.06 2.76 2.45 -12.29 -0.03 2.73 16 12 H 0.04 2.07 4.28 -2.39 -0.01 2.06 16 13 C -0.12 -5.89 8.71 71.98 0.63 -5.27 16 14 C -0.51 -28.00 8.33 25.60 0.21 -27.78 16 15 H 0.04 2.46 7.73 -2.91 -0.02 2.44 16 16 C 0.02 1.16 5.30 84.66 0.45 1.61 16 17 N -0.91 -50.89 11.32 21.45 0.24 -50.64 16 18 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.21 -9.13 6.15 -20.24 -0.12 -9.26 16 23 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 24 H 0.08 3.36 6.20 -2.39 -0.01 3.34 16 25 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 31 H 0.12 4.68 7.19 -2.91 -0.02 4.65 16 32 H 0.03 1.50 7.07 -2.39 -0.02 1.49 16 33 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -65.15 289.77 5.74 -59.41 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.09 Total: 12.78 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 4.39 Total: -39.95 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.76 Total: -77.54 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.15 5.74 -59.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.322 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds