Wall clock time and date at job start Mon Mar 30 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36655 * 119.73692 * 2 1 4 4 C 1.39592 * 119.76980 * 179.73726 * 3 2 1 5 5 C 1.46485 * 134.04207 * 179.60996 * 4 3 2 6 6 C 1.50701 * 126.49855 * 0.69442 * 5 4 3 7 7 H 1.09002 * 109.47060 * 324.70874 * 6 5 4 8 8 N 1.46901 * 109.46921 * 204.70693 * 6 5 4 9 9 C 1.50699 * 109.47269 * 84.70727 * 6 5 4 10 10 H 1.08000 * 119.99792 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 C 1.34231 * 107.00264 * 180.42619 * 5 4 3 18 18 N 1.36834 * 109.93846 * 0.24444 * 17 5 4 19 19 H 0.97003 * 125.06605 * 179.97438 * 18 17 5 20 20 C 1.37694 * 109.87420 * 359.97438 * 18 17 5 21 21 C 1.39080 * 133.51258 * 180.02562 * 20 18 17 22 22 C 1.50702 * 120.10982 * 359.92708 * 21 20 18 23 23 C 1.37788 * 119.77731 * 179.97438 * 21 20 18 24 24 H 1.08999 * 109.47507 * 270.01959 * 1 2 3 25 25 H 1.09006 * 109.47180 * 30.02544 * 1 2 3 26 26 H 1.09009 * 109.46774 * 150.02026 * 1 2 3 27 27 H 1.08003 * 120.11903 * 0.02562 * 3 2 1 28 28 H 1.00898 * 111.00245 * 299.99784 * 8 6 5 29 29 H 1.00904 * 111.00313 * 63.95601 * 8 6 5 30 30 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 31 31 H 1.08005 * 125.03641 * 180.26258 * 17 5 4 32 32 H 1.09003 * 109.46854 * 90.00797 * 22 21 20 33 33 H 1.08999 * 109.47005 * 210.00085 * 22 21 20 34 34 H 1.08989 * 109.47564 * 330.00652 * 22 21 20 35 35 H 1.08004 * 119.66689 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1866 0.0000 4 6 3.5807 1.1874 0.0056 5 6 4.5985 2.2409 0.0000 6 6 4.3500 3.7273 0.0002 7 1 3.4600 3.9470 -0.5894 8 7 5.5075 4.4173 -0.5846 9 6 4.1446 4.2021 1.4156 10 1 4.1899 3.4980 2.2333 11 6 3.8999 5.5356 1.6668 12 7 3.8452 6.3930 0.6711 13 14 3.6460 6.1242 3.4214 14 1 4.9544 6.5098 4.0084 15 1 2.7374 7.2989 3.4228 16 1 3.0443 5.0320 4.2277 17 6 5.7944 1.6314 0.0008 18 7 5.6260 0.2734 0.0009 19 1 6.3453 -0.3774 0.0010 20 6 4.2833 -0.0317 0.0007 21 6 3.5731 -1.2275 0.0011 22 6 4.3079 -2.5433 0.0003 23 6 2.1954 -1.2051 0.0013 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5143 26 1 -0.3633 -0.8903 -0.5136 27 1 1.6425 2.1206 0.0004 28 1 6.3458 4.2294 -0.0555 29 1 5.6275 4.1643 -1.5540 30 1 3.6727 7.3311 0.8477 31 1 6.7484 2.1377 0.0016 32 1 4.4858 -2.8607 1.0278 33 1 3.7076 -3.2943 -0.5132 34 1 5.2616 -2.4265 -0.5142 35 1 1.6456 -2.1348 0.0013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:11 Heat of formation + Delta-G solvation = 46.031619 kcal Electronic energy + Delta-G solvation = -17188.433520 eV Core-core repulsion = 14572.061211 eV Total energy + Delta-G solvation = -2616.372309 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.74996 -37.08105 -34.64747 -32.98240 -31.41632 -30.57300 -27.98910 -26.95776 -25.88763 -25.64651 -22.23920 -21.35232 -20.35951 -18.05071 -17.35581 -16.29372 -15.58964 -14.65324 -14.45622 -14.26677 -13.88587 -13.73109 -13.07375 -13.00752 -12.89716 -12.84812 -12.38306 -12.26290 -11.94026 -11.61315 -11.22183 -10.88914 -10.73381 -10.60374 -10.55081 -10.33811 -9.82860 -9.28080 -8.61888 -8.33052 -7.56176 -7.07717 -6.81895 -5.77702 -3.91536 1.63121 2.09905 3.37796 3.39954 3.45720 3.51621 3.67148 4.36555 4.58390 5.04129 5.17869 5.30363 5.45180 5.48304 5.54014 5.63922 5.69661 5.82166 5.92466 5.94748 6.02795 6.18738 6.24594 6.41669 6.48737 6.60616 6.75301 6.93700 7.18172 7.29316 7.45408 7.61985 7.78192 8.01268 8.07991 8.35600 8.74845 9.10253 9.25536 9.76308 11.25957 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.007171 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.512387 B = 3903.898968 C = 4497.186814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.131 4.131 3 C -0.054 4.054 4 C -0.092 4.092 5 C -0.138 4.138 6 C 0.283 3.717 7 H 0.045 0.955 8 N -0.810 5.810 9 C -0.522 4.522 10 H 0.051 0.949 11 C 0.082 3.918 12 N -0.850 5.850 13 Si 0.880 3.120 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.005 3.995 18 N -0.601 5.601 19 H 0.405 0.595 20 C 0.093 3.907 21 C -0.111 4.111 22 C -0.103 4.103 23 C -0.104 4.104 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.124 0.876 28 H 0.314 0.686 29 H 0.297 0.703 30 H 0.254 0.746 31 H 0.158 0.842 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 -14.678 -2.582 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C -0.072 4.072 4 C -0.098 4.098 5 C -0.147 4.147 6 C 0.173 3.827 7 H 0.062 0.938 8 N -0.335 5.335 9 C -0.561 4.561 10 H 0.069 0.931 11 C -0.124 4.124 12 N -0.485 5.485 13 Si 0.708 3.292 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.118 4.118 18 N -0.205 5.205 19 H 0.240 0.760 20 C -0.015 4.015 21 C -0.114 4.114 22 C -0.160 4.160 23 C -0.123 4.123 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.142 0.858 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.176 0.824 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.408 -13.805 -2.487 14.033 hybrid contribution 0.770 -0.898 0.972 1.531 sum 0.361 -14.703 -1.515 14.785 Atomic orbital electron populations 1.20649 0.91748 1.01924 1.01630 1.19247 0.95567 0.92799 1.05624 1.20259 0.92245 0.97581 0.97156 1.19225 0.93256 0.92027 1.05290 1.22440 0.90032 0.98872 1.03360 1.17584 0.90587 0.78855 0.95668 0.93766 1.59205 1.06430 1.65021 1.02848 1.20850 1.51100 0.93007 0.91162 0.93060 1.24943 0.94538 0.96897 0.95974 1.70104 1.46238 1.02250 1.29912 0.86813 0.77917 0.78311 0.86132 1.20861 1.21338 1.20089 1.21377 0.99455 0.81518 1.09409 1.41558 1.05031 1.06779 1.67150 0.76024 1.18093 0.83837 0.94725 1.04831 1.18683 0.93276 0.91767 1.07672 1.20602 0.99384 0.94535 1.01515 1.20401 0.92145 0.97096 1.02645 0.91984 0.91878 0.92458 0.85796 0.87413 0.89267 0.93595 0.82433 0.91957 0.91751 0.92866 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.99 36.01 0.36 -0.98 16 2 C -0.13 -2.15 5.84 -104.99 -0.61 -2.76 16 3 C -0.05 -1.05 9.67 -39.65 -0.38 -1.44 16 4 C -0.09 -1.92 6.35 -105.14 -0.67 -2.59 16 5 C -0.14 -3.01 5.36 -102.71 -0.55 -3.56 16 6 C 0.28 7.11 3.13 -70.02 -0.22 6.89 16 7 H 0.04 1.24 8.14 -51.93 -0.42 0.82 16 8 N -0.81 -18.89 8.29 -6.65 -0.06 -18.94 16 9 C -0.52 -14.57 8.71 -34.44 -0.30 -14.87 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 12 N -0.85 -24.95 12.77 55.43 0.71 -24.25 16 13 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.01 0.10 11.10 -16.73 -0.19 -0.09 16 18 N -0.60 -9.64 6.07 -10.65 -0.06 -9.71 16 19 H 0.40 4.96 8.87 -40.82 -0.36 4.60 16 20 C 0.09 1.67 6.95 -83.99 -0.58 1.09 16 21 C -0.11 -1.72 5.89 -104.47 -0.62 -2.34 16 22 C -0.10 -1.19 10.02 36.01 0.36 -0.83 16 23 C -0.10 -1.57 9.31 -39.54 -0.37 -1.93 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 26 H 0.06 0.63 8.08 -51.92 -0.42 0.21 16 27 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 28 H 0.31 6.88 7.96 -39.29 -0.31 6.56 16 29 H 0.30 6.21 9.06 -39.29 -0.36 5.85 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.16 2.52 7.31 -52.48 -0.38 2.14 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.05 0.56 7.99 -51.94 -0.42 0.14 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 297.76 15.07 4.49 4.49 Total: -1.00 -31.45 297.76 -8.55 -40.00 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -4.74 Total: 12.90 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.86 Total: -21.16 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.59 Total: -52.89 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.45 -8.55 -40.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.036 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds