Wall clock time and date at job start Mon Mar 30 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36655 * 119.73692 * 2 1 4 4 C 1.39592 * 119.76980 * 179.73726 * 3 2 1 5 5 C 1.46485 * 134.04207 * 179.60996 * 4 3 2 6 6 C 1.50701 * 126.49855 * 0.69442 * 5 4 3 7 7 H 1.09002 * 109.47060 * 324.70874 * 6 5 4 8 8 N 1.46901 * 109.46921 * 204.70693 * 6 5 4 9 9 C 1.50699 * 109.47269 * 84.70727 * 6 5 4 10 10 H 1.08000 * 119.99792 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 C 1.34231 * 107.00264 * 180.42619 * 5 4 3 18 18 N 1.36834 * 109.93846 * 0.24444 * 17 5 4 19 19 H 0.97003 * 125.06605 * 179.97438 * 18 17 5 20 20 C 1.37694 * 109.87420 * 359.97438 * 18 17 5 21 21 C 1.39080 * 133.51258 * 180.02562 * 20 18 17 22 22 C 1.50702 * 120.10982 * 359.92708 * 21 20 18 23 23 C 1.37788 * 119.77731 * 179.97438 * 21 20 18 24 24 H 1.08999 * 109.47507 * 270.01959 * 1 2 3 25 25 H 1.09006 * 109.47180 * 30.02544 * 1 2 3 26 26 H 1.09009 * 109.46774 * 150.02026 * 1 2 3 27 27 H 1.08003 * 120.11903 * 0.02562 * 3 2 1 28 28 H 1.00898 * 111.00245 * 299.99784 * 8 6 5 29 29 H 1.00904 * 111.00313 * 63.95601 * 8 6 5 30 30 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 31 31 H 1.08005 * 125.03641 * 180.26258 * 17 5 4 32 32 H 1.09003 * 109.46854 * 90.00797 * 22 21 20 33 33 H 1.08999 * 109.47005 * 210.00085 * 22 21 20 34 34 H 1.08989 * 109.47564 * 330.00652 * 22 21 20 35 35 H 1.08004 * 119.66689 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1866 0.0000 4 6 3.5807 1.1874 0.0056 5 6 4.5985 2.2409 0.0000 6 6 4.3500 3.7273 0.0002 7 1 3.4600 3.9470 -0.5894 8 7 5.5075 4.4173 -0.5846 9 6 4.1446 4.2021 1.4156 10 1 4.1899 3.4980 2.2333 11 6 3.8999 5.5356 1.6668 12 7 3.8452 6.3930 0.6711 13 14 3.6460 6.1242 3.4214 14 1 4.9544 6.5098 4.0084 15 1 2.7374 7.2989 3.4228 16 1 3.0443 5.0320 4.2277 17 6 5.7944 1.6314 0.0008 18 7 5.6260 0.2734 0.0009 19 1 6.3453 -0.3774 0.0010 20 6 4.2833 -0.0317 0.0007 21 6 3.5731 -1.2275 0.0011 22 6 4.3079 -2.5433 0.0003 23 6 2.1954 -1.2051 0.0013 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5143 26 1 -0.3633 -0.8903 -0.5136 27 1 1.6425 2.1206 0.0004 28 1 6.3458 4.2294 -0.0555 29 1 5.6275 4.1643 -1.5540 30 1 3.6727 7.3311 0.8477 31 1 6.7484 2.1377 0.0016 32 1 4.4858 -2.8607 1.0278 33 1 3.7076 -3.2943 -0.5132 34 1 5.2616 -2.4265 -0.5142 35 1 1.6456 -2.1348 0.0013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:11 Heat of formation + Delta-G solvation = 25.304555 kcal Electronic energy + Delta-G solvation = -17189.332313 eV Core-core repulsion = 14572.061211 eV Total energy + Delta-G solvation = -2617.271102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.12747 -38.39988 -36.47127 -34.32095 -33.38296 -31.92956 -29.48456 -28.11115 -27.82563 -26.95119 -24.12777 -22.67534 -21.62884 -19.66352 -18.71526 -18.41149 -16.95020 -16.49808 -16.11558 -15.69544 -15.46564 -14.97744 -14.59507 -14.29327 -14.21346 -14.12338 -13.87362 -13.54672 -13.32917 -12.97036 -12.72285 -12.70383 -12.55724 -12.16071 -11.88382 -11.77852 -11.62942 -11.31502 -10.53718 -10.10190 -8.94849 -8.86015 -8.30656 -7.90681 -6.14567 0.28488 0.76964 1.41339 1.42120 1.52137 1.92540 2.36984 2.49958 3.00858 3.27942 3.88377 4.02459 4.07404 4.29351 4.43293 4.46680 4.53970 4.62545 4.74441 4.82150 4.91380 4.92988 4.96166 5.07449 5.19614 5.27432 5.34934 5.51959 5.69575 5.78242 5.85485 5.97323 5.98899 6.29964 6.36762 6.72055 6.89270 7.16953 7.33461 7.57280 9.08963 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.007171 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.512387 B = 3903.898968 C = 4497.186814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.122 4.122 3 C -0.099 4.099 4 C -0.128 4.128 5 C -0.191 4.191 6 C 0.295 3.705 7 H -0.004 1.004 8 N -0.818 5.818 9 C -0.533 4.533 10 H 0.036 0.964 11 C 0.035 3.965 12 N -0.882 5.882 13 Si 0.944 3.056 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.277 1.277 17 C 0.033 3.967 18 N -0.583 5.583 19 H 0.426 0.574 20 C 0.079 3.921 21 C -0.103 4.103 22 C -0.102 4.102 23 C -0.108 4.108 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.324 0.676 29 H 0.311 0.689 30 H 0.255 0.745 31 H 0.182 0.818 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -17.683 -2.010 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.134 4.134 5 C -0.200 4.200 6 C 0.185 3.815 7 H 0.014 0.986 8 N -0.345 5.345 9 C -0.572 4.572 10 H 0.054 0.946 11 C -0.168 4.168 12 N -0.518 5.518 13 Si 0.770 3.230 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.202 1.202 17 C -0.093 4.093 18 N -0.188 5.188 19 H 0.265 0.735 20 C -0.029 4.029 21 C -0.105 4.105 22 C -0.158 4.158 23 C -0.127 4.127 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.064 0.936 31 H 0.199 0.801 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.234 -16.853 -1.914 16.963 hybrid contribution 0.544 -0.072 0.750 0.929 sum 0.778 -16.926 -1.163 16.983 Atomic orbital electron populations 1.20722 0.89484 1.03155 1.02547 1.19657 0.97350 0.92245 1.03085 1.20264 0.92408 0.97967 1.01156 1.19503 0.93953 0.93254 1.06679 1.22046 0.92311 0.97386 1.08301 1.17042 0.89394 0.81675 0.93401 0.98617 1.58960 1.06266 1.65451 1.03794 1.21093 1.50864 0.92990 0.92281 0.94574 1.25650 0.94361 0.97039 0.99758 1.70228 1.47374 1.02388 1.31821 0.85815 0.78090 0.77653 0.81479 1.19947 1.20759 1.20184 1.21563 0.99051 0.82477 1.06165 1.41436 1.05195 1.06299 1.65848 0.73453 1.18328 0.84284 0.94671 1.05612 1.19246 0.93712 0.92706 1.04884 1.20695 0.99802 0.92443 1.02868 1.20878 0.92409 0.97837 1.01568 0.91091 0.92439 0.89461 0.88697 0.86392 0.87798 0.93630 0.80104 0.90627 0.89400 0.91731 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 9.99 71.24 0.71 -1.82 16 2 C -0.12 -3.94 5.84 -20.10 -0.12 -4.06 16 3 C -0.10 -4.11 9.67 22.23 0.22 -3.89 16 4 C -0.13 -5.54 6.35 -20.20 -0.13 -5.67 16 5 C -0.19 -8.66 5.36 -18.63 -0.10 -8.76 16 6 C 0.30 15.71 3.13 43.42 0.14 15.84 16 7 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 8 N -0.82 -39.41 8.29 -174.95 -1.45 -40.86 16 9 C -0.53 -31.09 8.71 25.60 0.22 -30.87 16 10 H 0.04 2.16 7.74 -2.91 -0.02 2.14 16 11 C 0.03 2.03 5.39 84.65 0.46 2.48 16 12 N -0.88 -53.51 12.77 21.45 0.27 -53.24 16 13 Si 0.94 45.63 29.54 68.60 2.03 47.65 16 14 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 C 0.03 1.17 11.10 83.00 0.92 2.09 16 18 N -0.58 -17.54 6.07 -187.61 -1.14 -18.68 16 19 H 0.43 9.05 8.87 -92.71 -0.82 8.23 16 20 C 0.08 2.74 6.95 39.03 0.27 3.02 16 21 C -0.10 -2.88 5.89 -19.77 -0.12 -3.00 16 22 C -0.10 -1.85 10.02 71.24 0.71 -1.13 16 23 C -0.11 -2.95 9.31 22.30 0.21 -2.74 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.47 8.08 -2.38 -0.02 1.45 16 26 H 0.09 1.63 8.08 -2.38 -0.02 1.61 16 27 H 0.09 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.32 14.34 7.96 -89.70 -0.71 13.63 16 29 H 0.31 13.39 9.06 -89.69 -0.81 12.58 16 30 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.18 5.50 7.31 -2.91 -0.02 5.48 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 34 H 0.06 1.05 7.99 -2.39 -0.02 1.03 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -71.67 297.76 1.88 -69.79 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -1.22 Total: 33.84 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.39 Total: -38.51 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -2.32 Total: -112.78 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.67 1.88 -69.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.098 kcal (2) G-P(sol) polarization free energy of solvation -71.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds