Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36656 * 119.73428 * 2 1 4 4 C 1.39593 * 119.76054 * 179.97438 * 3 2 1 5 5 C 1.46493 * 134.03132 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.49979 * 0.02562 * 5 4 3 7 7 H 1.09000 * 109.47273 * 40.00542 * 6 5 4 8 8 N 1.46901 * 109.46995 * 160.00151 * 6 5 4 9 9 C 1.50697 * 109.47471 * 279.99896 * 6 5 4 10 10 H 1.08009 * 119.99662 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00276 * 179.97438 * 9 6 5 12 12 N 1.31513 * 119.99972 * 0.02562 * 11 9 6 13 13 Si 1.86807 * 119.99997 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.46455 * 90.00780 * 13 11 9 15 15 H 1.48495 * 109.47158 * 210.00095 * 13 11 9 16 16 H 1.48494 * 109.47151 * 330.00623 * 13 11 9 17 17 C 1.34236 * 106.99702 * 179.97438 * 5 4 3 18 18 N 1.36824 * 109.93935 * 359.97438 * 17 5 4 19 19 H 0.97005 * 125.06712 * 179.97438 * 18 17 5 20 20 C 1.37692 * 109.87585 * 0.02562 * 18 17 5 21 21 C 1.39085 * 133.51567 * 180.02562 * 20 18 17 22 22 C 1.50702 * 120.11066 * 359.71641 * 21 20 18 23 23 C 1.37793 * 119.77920 * 179.97438 * 21 20 18 24 24 H 1.08998 * 109.47328 * 89.99981 * 1 2 3 25 25 H 1.09001 * 109.46881 * 210.00496 * 1 2 3 26 26 H 1.09007 * 109.47051 * 329.99773 * 1 2 3 27 27 H 1.08003 * 120.12056 * 359.97438 * 3 2 1 28 28 H 1.00902 * 111.00188 * 59.99923 * 8 6 5 29 29 H 1.00899 * 111.00306 * 183.95087 * 8 6 5 30 30 H 0.96998 * 119.99963 * 179.97438 * 12 11 9 31 31 H 1.07999 * 125.02769 * 179.97438 * 17 5 4 32 32 H 1.08998 * 109.46666 * 90.00595 * 22 21 20 33 33 H 1.09006 * 109.46674 * 210.00016 * 22 21 20 34 34 H 1.08996 * 109.47053 * 330.00271 * 22 21 20 35 35 H 1.07995 * 119.66646 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1848 1.1866 0.0000 4 6 3.5808 1.1873 0.0005 5 6 4.5985 2.2410 0.0012 6 6 4.3499 3.7273 0.0020 7 1 3.5135 3.9555 0.6627 8 7 5.5527 4.4247 0.4761 9 6 4.0238 4.1829 -1.3970 10 1 3.9986 3.4675 -2.2058 11 6 3.7565 5.5127 -1.6443 12 7 3.7867 6.3837 -0.6594 13 14 3.3530 6.0775 -3.3786 14 1 1.8861 5.9989 -3.5959 15 1 3.8059 7.4799 -3.5605 16 1 4.0461 5.2025 -4.3580 17 6 5.7945 1.6314 0.0021 18 7 5.6261 0.2735 0.0026 19 1 6.3454 -0.3773 0.0030 20 6 4.2834 -0.0317 0.0015 21 6 3.5732 -1.2275 0.0020 22 6 4.3079 -2.5433 -0.0024 23 6 2.1954 -1.2052 0.0010 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6425 2.1206 -0.0004 28 1 6.3428 4.2291 -0.1203 29 1 5.3905 5.4180 0.5471 30 1 3.5990 7.3193 -0.8335 31 1 6.7483 2.1378 0.0023 32 1 4.4882 -2.8620 1.0242 33 1 3.7063 -3.2936 -0.5156 34 1 5.2604 -2.4257 -0.5191 35 1 1.6457 -2.1347 0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = 38.057517 kcal Electronic energy + Delta-G solvation = -17204.323411 eV Core-core repulsion = 14587.605319 eV Total energy + Delta-G solvation = -2616.718092 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65443 -36.99184 -34.74517 -33.01441 -31.33136 -30.47456 -28.00287 -26.89982 -25.85490 -25.59638 -22.30906 -21.30227 -20.29419 -17.94705 -17.29423 -16.37722 -15.56631 -14.75977 -14.48539 -14.18543 -13.66732 -13.59230 -13.03938 -12.94698 -12.91480 -12.68150 -12.47229 -12.28679 -11.68865 -11.58061 -11.16738 -10.93348 -10.84658 -10.64914 -10.48558 -10.25557 -10.00333 -9.60993 -8.78371 -8.49198 -7.46896 -7.19568 -6.76829 -5.98918 -4.15952 1.71263 2.16711 3.26710 3.33538 3.36926 3.56800 3.77054 4.36997 4.48492 5.10042 5.19202 5.24710 5.38191 5.54748 5.61477 5.68878 5.81083 5.88407 5.96552 6.00303 6.08712 6.24746 6.29932 6.50692 6.62381 6.72072 6.94245 7.02252 7.24982 7.42018 7.46248 7.79532 7.83298 7.89329 8.20828 8.24408 8.78390 9.02530 9.18237 9.55208 10.96609 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.007291 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.745462 B = 3839.520909 C = 4485.258434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.132 4.132 3 C -0.055 4.055 4 C -0.092 4.092 5 C -0.101 4.101 6 C 0.271 3.729 7 H 0.045 0.955 8 N -0.851 5.851 9 C -0.534 4.534 10 H 0.054 0.946 11 C 0.064 3.936 12 N -0.897 5.897 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.021 3.979 18 N -0.603 5.603 19 H 0.404 0.596 20 C 0.093 3.907 21 C -0.111 4.111 22 C -0.103 4.103 23 C -0.106 4.106 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.123 0.877 28 H 0.308 0.692 29 H 0.355 0.645 30 H 0.264 0.736 31 H 0.163 0.837 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 -13.245 1.355 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.134 4.134 3 C -0.073 4.073 4 C -0.098 4.098 5 C -0.108 4.108 6 C 0.161 3.839 7 H 0.062 0.938 8 N -0.380 5.380 9 C -0.574 4.574 10 H 0.072 0.928 11 C -0.137 4.137 12 N -0.537 5.537 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.101 4.101 18 N -0.207 5.207 19 H 0.240 0.760 20 C -0.015 4.015 21 C -0.113 4.113 22 C -0.160 4.160 23 C -0.125 4.125 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.171 0.829 30 H 0.074 0.926 31 H 0.180 0.820 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.023 -13.501 2.078 13.660 hybrid contribution 0.096 0.637 -2.020 2.120 sum 0.073 -12.865 0.059 12.865 Atomic orbital electron populations 1.20642 0.91857 1.01869 1.01533 1.19227 0.95480 0.92828 1.05822 1.20242 0.92284 0.97494 0.97324 1.19174 0.93171 0.92058 1.05375 1.20967 0.89889 0.96190 1.03757 1.17340 0.90110 0.82739 0.93714 0.93761 1.59480 1.06586 1.17102 1.54800 1.21869 1.47476 0.93100 0.94962 0.92772 1.25010 0.94858 0.96768 0.97103 1.69742 1.50013 1.02925 1.30976 0.86574 0.78774 0.77712 0.84827 1.20574 1.21248 1.20016 1.21421 0.99774 0.80923 1.08022 1.41614 1.04946 1.06970 1.67152 0.76049 1.18043 0.83921 0.94589 1.04975 1.18673 0.93251 0.91759 1.07661 1.20600 0.99437 0.94542 1.01429 1.20376 0.92159 0.97021 1.02914 0.92081 0.92483 0.91954 0.85949 0.88334 0.82862 0.92614 0.81966 0.92003 0.91811 0.92824 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.99 36.01 0.36 -1.01 16 2 C -0.13 -2.22 5.85 -104.99 -0.61 -2.83 16 3 C -0.05 -1.10 9.67 -39.65 -0.38 -1.48 16 4 C -0.09 -1.97 6.35 -105.14 -0.67 -2.63 16 5 C -0.10 -2.29 5.41 -102.71 -0.56 -2.84 16 6 C 0.27 6.91 3.23 -70.02 -0.23 6.68 16 7 H 0.04 1.26 8.14 -51.93 -0.42 0.84 16 8 N -0.85 -20.23 8.88 -6.65 -0.06 -20.29 16 9 C -0.53 -14.62 8.71 -34.44 -0.30 -14.92 16 10 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 11 C 0.06 1.75 5.38 -17.82 -0.10 1.65 16 12 N -0.90 -24.91 11.54 55.43 0.64 -24.28 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 C 0.02 0.41 11.06 -16.74 -0.19 0.22 16 18 N -0.60 -9.99 6.07 -10.65 -0.06 -10.06 16 19 H 0.40 5.13 8.87 -40.82 -0.36 4.77 16 20 C 0.09 1.71 6.95 -83.99 -0.58 1.12 16 21 C -0.11 -1.75 5.89 -104.47 -0.62 -2.37 16 22 C -0.10 -1.21 10.02 36.01 0.36 -0.85 16 23 C -0.11 -1.63 9.31 -39.54 -0.37 -2.00 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.12 2.51 8.06 -52.48 -0.42 2.08 16 28 H 0.31 6.85 8.00 -39.29 -0.31 6.54 16 29 H 0.36 9.08 7.08 -39.29 -0.28 8.80 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.16 2.78 7.31 -52.49 -0.38 2.39 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.05 0.58 8.00 -51.93 -0.42 0.17 16 35 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -29.51 295.27 -8.60 -38.11 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -3.87 Total: -21.26 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.52 Total: -54.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.51 -8.60 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.166 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds