Wall clock time and date at job start Mon Mar 30 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38825 * 119.73810 * 2 1 4 4 C 1.37753 * 120.66993 * 180.02562 * 3 2 1 5 5 C 1.39129 * 119.77993 * 359.95302 * 4 3 2 6 6 N 1.37681 * 133.51043 * 180.02562 * 5 4 3 7 7 H 0.96993 * 125.06406 * 359.97438 * 6 5 4 8 8 C 1.36834 * 109.87125 * 180.02562 * 6 5 4 9 9 C 1.50703 * 125.03342 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46936 * 155.02003 * 9 8 6 11 11 C 1.50691 * 109.47258 * 275.02581 * 9 8 6 12 12 H 1.08009 * 119.99883 * 25.10804 * 11 9 8 13 13 C 1.37873 * 120.00476 * 205.10234 * 11 9 8 14 14 N 1.31524 * 119.99880 * 355.28854 * 13 11 9 15 15 Si 1.86797 * 120.00308 * 175.28129 * 13 11 9 16 16 H 1.48503 * 109.46965 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47279 * 300.00033 * 15 13 11 18 18 H 1.48497 * 109.47166 * 60.00799 * 15 13 11 19 19 C 1.53007 * 109.46892 * 35.02734 * 9 8 6 20 20 N 1.46893 * 109.47421 * 65.17895 * 19 9 8 21 21 C 1.34233 * 109.93204 * 0.26384 * 8 6 5 22 22 C 1.40672 * 119.32772 * 0.02562 * 5 4 3 23 23 C 1.36627 * 119.73584 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47566 * 270.02526 * 1 2 3 25 25 H 1.09001 * 109.47284 * 30.02603 * 1 2 3 26 26 H 1.08998 * 109.47351 * 150.02762 * 1 2 3 27 27 H 1.08006 * 119.66883 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.11236 * 179.97438 * 4 3 2 29 29 H 0.97000 * 119.99200 * 354.48828 * 14 13 11 30 30 H 1.09006 * 109.46829 * 185.18099 * 19 9 8 31 31 H 1.08999 * 109.46972 * 305.17849 * 19 9 8 32 32 H 1.00900 * 111.00360 * 56.04425 * 20 19 9 33 33 H 1.00898 * 111.00500 * 180.02562 * 20 19 9 34 34 H 1.08002 * 126.50331 * 179.71083 * 21 8 6 35 35 H 1.07997 * 120.11813 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2054 0.0000 4 6 3.5729 1.2278 -0.0005 5 6 4.2835 0.0317 -0.0001 6 7 5.6261 -0.2733 0.0000 7 1 6.3453 0.3774 -0.0005 8 6 5.7946 -1.6313 0.0000 9 6 7.1257 -2.3379 0.0006 10 1 7.0096 -3.3310 0.4344 11 6 7.6285 -2.4633 -1.4144 12 1 7.3005 -1.7627 -2.1681 13 6 8.5074 -3.4722 -1.7469 14 7 8.9791 -4.2680 -0.8120 15 14 9.0281 -3.7090 -3.5251 16 1 9.9708 -4.8528 -3.6167 17 1 7.8309 -3.9870 -4.3586 18 1 9.6961 -2.4761 -4.0137 19 6 8.1295 -1.5337 0.8293 20 7 7.7022 -1.5165 2.2346 21 6 4.5986 -2.2408 -0.0060 22 6 3.5810 -1.1871 0.0004 23 6 2.1846 -1.1864 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6459 2.1351 0.0004 28 1 4.0995 2.1708 -0.0009 29 1 8.7727 -4.0967 0.1202 30 1 9.1144 -1.9948 0.7546 31 1 8.1770 -0.5123 0.4514 32 1 7.5882 -2.4541 2.5894 33 1 8.3491 -0.9907 2.8029 34 1 4.4204 -3.3060 -0.0119 35 1 1.6423 -2.1203 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:18 Heat of formation + Delta-G solvation = 32.871936 kcal Electronic energy + Delta-G solvation = -17041.639394 eV Core-core repulsion = 14424.696438 eV Total energy + Delta-G solvation = -2616.942956 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.63255 -37.24687 -35.18380 -32.55107 -31.66447 -30.71880 -29.32516 -27.19934 -25.58116 -23.92239 -22.29587 -21.07905 -20.00670 -19.36270 -17.41210 -16.96184 -15.45174 -14.80218 -14.49438 -14.01043 -13.92861 -13.76204 -13.57711 -13.32217 -13.23937 -12.98923 -12.26708 -12.02218 -11.89436 -11.61507 -11.25294 -10.96526 -10.67308 -10.53725 -10.27171 -10.24331 -10.08135 -9.18669 -8.84243 -8.57030 -8.08705 -7.38808 -6.95561 -6.53049 -4.30755 1.69557 2.11424 3.34514 3.38214 3.55988 3.62607 3.86413 4.38061 4.41733 5.10571 5.13901 5.23621 5.34806 5.45013 5.54850 5.75903 5.79190 5.88383 5.93012 6.06011 6.12817 6.25383 6.41226 6.45924 6.59193 6.69330 6.77838 6.94359 7.03772 7.12630 7.40330 7.59420 7.62226 7.90403 7.92142 8.01611 8.23366 8.29294 8.64943 9.40083 10.81218 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.006083 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.180597 B = 4601.561561 C = 5060.953099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.126 4.126 5 C 0.082 3.918 6 N -0.582 5.582 7 H 0.408 0.592 8 C 0.178 3.822 9 C 0.084 3.916 10 H 0.055 0.945 11 C -0.591 4.591 12 H 0.053 0.947 13 C 0.027 3.973 14 N -0.903 5.903 15 Si 1.068 2.932 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.287 1.287 19 C 0.062 3.938 20 N -0.855 5.855 21 C -0.249 4.249 22 C -0.089 4.089 23 C -0.081 4.081 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.269 0.731 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.335 0.665 33 H 0.324 0.676 34 H 0.134 0.866 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 7.665 2.941 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.128 4.128 3 C -0.138 4.138 4 C -0.146 4.146 5 C -0.025 4.025 6 N -0.183 5.183 7 H 0.244 0.756 8 C 0.068 3.932 9 C 0.064 3.936 10 H 0.073 0.927 11 C -0.629 4.629 12 H 0.071 0.929 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.895 3.105 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.214 1.214 19 C -0.069 4.069 20 N -0.383 5.383 21 C -0.272 4.272 22 C -0.094 4.094 23 C -0.100 4.100 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.152 0.848 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.390 7.106 1.655 11.119 hybrid contribution 0.445 0.894 1.184 1.549 sum -7.945 8.001 2.839 11.627 Atomic orbital electron populations 1.20643 0.91973 1.01885 1.01409 1.19195 0.95299 0.92981 1.05293 1.20437 0.92798 0.96967 1.03576 1.19901 0.93708 0.94602 1.06431 1.18240 0.84059 0.95130 1.05118 1.41768 1.04875 1.07163 1.64517 0.75568 1.20830 0.97417 0.81143 0.93782 1.17893 0.85308 0.93869 0.96518 0.92660 1.21767 1.30082 1.17827 0.93272 0.92894 1.25878 0.93527 0.92223 1.06188 1.70839 1.43285 1.37801 1.01868 0.83554 0.76612 0.76387 0.73950 1.20624 1.21127 1.21362 1.22208 0.98418 0.99623 0.86637 1.58956 1.54704 1.20265 1.04351 1.21201 0.89909 0.97504 1.18597 1.19245 0.92897 0.92854 1.04420 1.20031 0.91941 0.97111 1.00898 0.92134 0.92326 0.92203 0.86757 0.87104 0.92000 0.95066 0.93157 0.85286 0.86521 0.84770 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.99 36.00 0.36 -0.81 16 2 C -0.13 -1.92 5.85 -104.99 -0.61 -2.53 16 3 C -0.12 -1.77 9.66 -39.54 -0.38 -2.15 16 4 C -0.13 -2.06 10.08 -39.43 -0.40 -2.45 16 5 C 0.08 1.58 7.28 -83.99 -0.61 0.97 16 6 N -0.58 -11.50 5.84 -6.95 -0.04 -11.54 16 7 H 0.41 7.33 7.89 -40.82 -0.32 7.01 16 8 C 0.18 3.92 5.52 -81.77 -0.45 3.47 16 9 C 0.08 1.96 1.88 -92.92 -0.17 1.79 16 10 H 0.06 1.40 7.07 -51.93 -0.37 1.03 16 11 C -0.59 -15.54 8.29 -34.45 -0.29 -15.83 16 12 H 0.05 1.43 7.81 -52.48 -0.41 1.02 16 13 C 0.03 0.72 5.45 -17.82 -0.10 0.63 16 14 N -0.90 -25.34 13.57 55.43 0.75 -24.59 16 15 Si 1.07 24.09 29.91 -169.99 -5.08 19.00 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.06 1.28 5.83 -3.82 -0.02 1.26 16 20 N -0.85 -15.02 9.34 -10.37 -0.10 -15.12 16 21 C -0.25 -5.43 10.95 -37.67 -0.41 -5.84 16 22 C -0.09 -1.79 6.37 -105.13 -0.67 -2.46 16 23 C -0.08 -1.41 9.67 -39.64 -0.38 -1.79 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.58 8.08 -51.93 -0.42 0.17 16 26 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 27 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 28 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.27 7.40 6.26 -40.82 -0.26 7.14 16 30 H 0.03 0.70 7.62 -51.93 -0.40 0.31 16 31 H 0.05 1.01 7.09 -51.93 -0.37 0.64 16 32 H 0.34 5.79 8.99 -39.29 -0.35 5.43 16 33 H 0.32 4.88 9.08 -39.29 -0.36 4.52 16 34 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 35 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -28.95 295.14 -8.74 -37.69 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -4.58 Total: 15.86 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -4.14 Total: -25.75 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.61 Total: -51.25 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.08 Total: 19.00 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.95 -8.74 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.562 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds