Wall clock time and date at job start Mon Mar 30 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38825 * 119.73810 * 2 1 4 4 C 1.37753 * 120.66993 * 180.02562 * 3 2 1 5 5 C 1.39129 * 119.77993 * 359.95302 * 4 3 2 6 6 N 1.37681 * 133.51043 * 180.02562 * 5 4 3 7 7 H 0.96993 * 125.06406 * 359.97438 * 6 5 4 8 8 C 1.36834 * 109.87125 * 180.02562 * 6 5 4 9 9 C 1.50703 * 125.03342 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46936 * 155.02003 * 9 8 6 11 11 C 1.50691 * 109.47258 * 275.02581 * 9 8 6 12 12 H 1.08009 * 119.99883 * 25.10804 * 11 9 8 13 13 C 1.37873 * 120.00476 * 205.10234 * 11 9 8 14 14 N 1.31524 * 119.99880 * 355.28854 * 13 11 9 15 15 Si 1.86797 * 120.00308 * 175.28129 * 13 11 9 16 16 H 1.48503 * 109.46965 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47279 * 300.00033 * 15 13 11 18 18 H 1.48497 * 109.47166 * 60.00799 * 15 13 11 19 19 C 1.53007 * 109.46892 * 35.02734 * 9 8 6 20 20 N 1.46893 * 109.47421 * 65.17895 * 19 9 8 21 21 C 1.34233 * 109.93204 * 0.26384 * 8 6 5 22 22 C 1.40672 * 119.32772 * 0.02562 * 5 4 3 23 23 C 1.36627 * 119.73584 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47566 * 270.02526 * 1 2 3 25 25 H 1.09001 * 109.47284 * 30.02603 * 1 2 3 26 26 H 1.08998 * 109.47351 * 150.02762 * 1 2 3 27 27 H 1.08006 * 119.66883 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.11236 * 179.97438 * 4 3 2 29 29 H 0.97000 * 119.99200 * 354.48828 * 14 13 11 30 30 H 1.09006 * 109.46829 * 185.18099 * 19 9 8 31 31 H 1.08999 * 109.46972 * 305.17849 * 19 9 8 32 32 H 1.00900 * 111.00360 * 56.04425 * 20 19 9 33 33 H 1.00898 * 111.00500 * 180.02562 * 20 19 9 34 34 H 1.08002 * 126.50331 * 179.71083 * 21 8 6 35 35 H 1.07997 * 120.11813 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2054 0.0000 4 6 3.5729 1.2278 -0.0005 5 6 4.2835 0.0317 -0.0001 6 7 5.6261 -0.2733 0.0000 7 1 6.3453 0.3774 -0.0005 8 6 5.7946 -1.6313 0.0000 9 6 7.1257 -2.3379 0.0006 10 1 7.0096 -3.3310 0.4344 11 6 7.6285 -2.4633 -1.4144 12 1 7.3005 -1.7627 -2.1681 13 6 8.5074 -3.4722 -1.7469 14 7 8.9791 -4.2680 -0.8120 15 14 9.0281 -3.7090 -3.5251 16 1 9.9708 -4.8528 -3.6167 17 1 7.8309 -3.9870 -4.3586 18 1 9.6961 -2.4761 -4.0137 19 6 8.1295 -1.5337 0.8293 20 7 7.7022 -1.5165 2.2346 21 6 4.5986 -2.2408 -0.0060 22 6 3.5810 -1.1871 0.0004 23 6 2.1846 -1.1864 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6459 2.1351 0.0004 28 1 4.0995 2.1708 -0.0009 29 1 8.7727 -4.0967 0.1202 30 1 9.1144 -1.9948 0.7546 31 1 8.1770 -0.5123 0.4514 32 1 7.5882 -2.4541 2.5894 33 1 8.3491 -0.9907 2.8029 34 1 4.4204 -3.3060 -0.0119 35 1 1.6423 -2.1203 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:17 Heat of formation + Delta-G solvation = 14.840778 kcal Electronic energy + Delta-G solvation = -17042.421284 eV Core-core repulsion = 14424.696438 eV Total energy + Delta-G solvation = -2617.724846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.10723 -38.65823 -36.85106 -34.40057 -33.01124 -32.06369 -30.94101 -28.73648 -26.85339 -25.84300 -23.79677 -22.53373 -21.43884 -21.01727 -19.19148 -18.56959 -16.95717 -16.22398 -16.00680 -15.61899 -15.53993 -15.36764 -15.10325 -14.74381 -14.60521 -14.14713 -13.78561 -13.68573 -13.36960 -12.85441 -12.83365 -12.55983 -12.15038 -12.07523 -11.90795 -11.87620 -11.61681 -10.92198 -10.59619 -10.46829 -9.63804 -8.85006 -8.64823 -8.41372 -6.42852 0.34205 0.79837 1.52057 1.57934 1.78278 1.99187 2.36821 2.53916 3.04670 3.11689 3.75894 3.84353 4.03056 4.17691 4.28436 4.34969 4.51951 4.56222 4.62713 4.68160 4.90827 4.96251 4.99167 5.05662 5.12930 5.19971 5.26613 5.39136 5.60816 5.82148 5.86239 6.00148 6.05815 6.14829 6.19826 6.40512 6.49139 6.61159 6.83596 7.34393 8.70035 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.006083 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.180597 B = 4601.561561 C = 5060.953099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.120 4.120 3 C -0.109 4.109 4 C -0.131 4.131 5 C 0.064 3.936 6 N -0.578 5.578 7 H 0.414 0.586 8 C 0.159 3.841 9 C 0.087 3.913 10 H 0.027 0.973 11 C -0.599 4.599 12 H 0.041 0.959 13 C -0.017 4.017 14 N -0.927 5.927 15 Si 1.109 2.891 16 H -0.282 1.282 17 H -0.278 1.278 18 H -0.270 1.270 19 C 0.080 3.920 20 N -0.847 5.847 21 C -0.271 4.271 22 C -0.118 4.118 23 C -0.099 4.099 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.137 0.863 29 H 0.261 0.739 30 H 0.008 0.992 31 H 0.057 0.943 32 H 0.338 0.662 33 H 0.343 0.657 34 H 0.124 0.876 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 9.977 2.724 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C -0.128 4.128 4 C -0.151 4.151 5 C -0.042 4.042 6 N -0.181 5.181 7 H 0.251 0.749 8 C 0.049 3.951 9 C 0.067 3.933 10 H 0.045 0.955 11 C -0.638 4.638 12 H 0.059 0.941 13 C -0.217 4.217 14 N -0.563 5.563 15 Si 0.931 3.069 16 H -0.207 1.207 17 H -0.203 1.203 18 H -0.195 1.195 19 C -0.051 4.051 20 N -0.376 5.376 21 C -0.295 4.295 22 C -0.123 4.123 23 C -0.117 4.117 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.172 0.828 28 H 0.155 0.845 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.283 9.452 1.462 14.043 hybrid contribution 0.838 0.258 1.310 1.577 sum -9.445 9.710 2.772 13.827 Atomic orbital electron populations 1.20721 0.88912 1.03344 1.02791 1.19706 0.97536 0.92214 1.02661 1.20981 0.92407 0.98483 1.00919 1.20311 0.94520 0.94519 1.05796 1.18637 0.83609 0.96109 1.05882 1.41624 1.05582 1.06224 1.64639 0.74893 1.20502 0.96524 0.82389 0.95699 1.17687 0.86903 0.93219 0.95453 0.95520 1.22000 1.29736 1.17485 0.94547 0.94079 1.27091 0.93525 0.92059 1.09026 1.70924 1.44739 1.38854 1.01831 0.83018 0.76626 0.76952 0.70281 1.20690 1.20343 1.19485 1.21821 0.96199 0.99027 0.88099 1.58843 1.54960 1.20744 1.03059 1.21347 0.91157 0.97739 1.19236 1.19443 0.94084 0.92541 1.06265 1.20303 0.90997 0.98830 1.01603 0.90644 0.90165 0.91574 0.82828 0.84493 0.92866 0.97371 0.92447 0.85000 0.84433 0.85757 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 9.99 71.23 0.71 -1.16 16 2 C -0.12 -3.25 5.85 -20.10 -0.12 -3.37 16 3 C -0.11 -2.80 9.66 22.30 0.22 -2.59 16 4 C -0.13 -3.91 10.08 22.37 0.23 -3.68 16 5 C 0.06 2.43 7.28 39.03 0.28 2.72 16 6 N -0.58 -22.96 5.84 -175.91 -1.03 -23.99 16 7 H 0.41 14.78 7.89 -92.71 -0.73 14.05 16 8 C 0.16 7.24 5.52 40.86 0.23 7.46 16 9 C 0.09 4.26 1.88 -12.29 -0.02 4.23 16 10 H 0.03 1.44 7.07 -2.39 -0.02 1.42 16 11 C -0.60 -32.50 8.29 25.60 0.21 -32.29 16 12 H 0.04 2.28 7.81 -2.91 -0.02 2.25 16 13 C -0.02 -0.94 5.45 84.65 0.46 -0.48 16 14 N -0.93 -53.67 13.57 21.45 0.29 -53.38 16 15 Si 1.11 49.02 29.91 68.60 2.05 51.07 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 19 C 0.08 3.38 5.83 86.31 0.50 3.89 16 20 N -0.85 -29.87 9.34 -186.72 -1.74 -31.62 16 21 C -0.27 -12.32 10.95 23.51 0.26 -12.07 16 22 C -0.12 -4.79 6.37 -20.20 -0.13 -4.91 16 23 C -0.10 -3.30 9.67 22.23 0.22 -3.09 16 24 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 26 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 27 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 28 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.26 15.03 6.26 -92.71 -0.58 14.45 16 30 H 0.01 0.38 7.62 -2.38 -0.02 0.36 16 31 H 0.06 2.32 7.09 -2.39 -0.02 2.31 16 32 H 0.34 11.89 8.99 -89.69 -0.81 11.08 16 33 H 0.34 10.04 9.08 -89.70 -0.81 9.23 16 34 H 0.12 5.64 8.06 -2.91 -0.02 5.62 16 35 H 0.12 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -64.02 295.14 1.58 -62.45 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -1.04 Total: 40.81 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.04 Total: -45.34 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -2.48 Total: -108.99 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.05 Total: 51.07 kcal Total: -64.02 1.58 -62.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.289 kcal (2) G-P(sol) polarization free energy of solvation -64.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds