Wall clock time and date at job start Mon Mar 30 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33499 * 126.14799 * 2 1 4 4 C 1.30744 * 109.90110 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.41917 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46758 * 300.02365 * 5 4 3 7 7 C 1.52991 * 109.47106 * 60.02464 * 5 4 3 8 8 N 1.36252 * 109.15956 * 0.26434 * 4 3 2 9 9 C 1.36153 * 132.30305 * 179.73336 * 8 4 3 10 10 C 1.39244 * 120.16430 * 180.02562 * 9 8 4 11 11 C 1.41206 * 120.37951 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00087 * 23.24387 * 11 10 9 13 13 C 1.39547 * 120.00618 * 203.25365 * 11 10 9 14 14 N 1.31089 * 119.99439 * 17.56284 * 13 11 10 15 15 Si 1.86795 * 120.00369 * 197.56861 * 13 11 10 16 16 H 1.48506 * 109.47175 * 59.99471 * 15 13 11 17 17 H 1.48498 * 109.47309 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47050 * 299.99578 * 15 13 11 19 19 C 1.46688 * 119.25018 * 359.97438 * 10 9 8 20 20 C 1.35434 * 118.98384 * 359.61660 * 19 10 9 21 21 C 1.37882 * 106.87104 * 359.58275 * 8 4 3 22 22 H 1.08999 * 109.47039 * 89.97055 * 1 2 3 23 23 H 1.09002 * 109.47191 * 209.97589 * 1 2 3 24 24 H 1.09006 * 109.47196 * 329.97362 * 1 2 3 25 25 H 1.08999 * 109.47065 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.46435 * 179.97438 * 6 5 4 27 27 H 1.08999 * 109.47192 * 60.00250 * 6 5 4 28 28 H 1.09000 * 109.46930 * 299.99817 * 6 5 4 29 29 H 1.08999 * 109.47218 * 299.99980 * 7 5 4 30 30 H 1.08997 * 109.47319 * 60.00364 * 7 5 4 31 31 H 1.09002 * 109.47540 * 180.02562 * 7 5 4 32 32 H 1.08001 * 119.91847 * 0.02562 * 9 8 4 33 33 H 0.97006 * 119.99283 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.50971 * 179.97438 * 19 10 9 35 35 H 1.08002 * 120.10177 * 179.89599 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2945 1.0780 0.0000 4 6 3.5497 0.7122 -0.0005 5 6 4.7318 1.6469 -0.0002 6 6 4.6838 2.5303 -1.2486 7 6 4.6852 2.5277 1.2499 8 7 3.6189 -0.6485 -0.0069 9 6 4.6712 -1.5125 -0.0146 10 6 4.4479 -2.8870 -0.0205 11 6 5.5359 -3.7871 -0.0280 12 1 6.5009 -3.4710 0.3397 13 6 5.3643 -5.0851 -0.5107 14 7 4.3292 -5.3737 -1.2615 15 14 6.6095 -6.4115 -0.0870 16 1 6.6690 -6.5818 1.3871 17 1 6.2015 -7.6929 -0.7168 18 1 7.9476 -6.0143 -0.5938 19 6 3.0697 -3.3893 -0.0176 20 6 2.0475 -2.5010 -0.0014 21 6 2.3215 -1.1153 -0.0007 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5143 25 1 5.6542 1.0662 -0.0013 26 1 5.5386 3.2066 -1.2480 27 1 3.7614 3.1110 -1.2475 28 1 4.7171 1.9027 -2.1392 29 1 3.7628 3.1084 1.2510 30 1 4.7194 1.8984 2.1392 31 1 5.5399 3.2041 1.2500 32 1 5.6815 -1.1309 -0.0163 33 1 4.2097 -6.2761 -1.5968 34 1 2.8732 -4.4512 -0.0224 35 1 1.0258 -2.8509 -0.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:21 Heat of formation + Delta-G solvation = 46.975747 kcal Electronic energy + Delta-G solvation = -17275.416777 eV Core-core repulsion = 14659.085408 eV Total energy + Delta-G solvation = -2616.331369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.36179 -36.35023 -34.83040 -33.66481 -32.12794 -29.80565 -29.13604 -26.75784 -25.91873 -24.83449 -22.25443 -21.57337 -20.09125 -18.98524 -17.40329 -15.90466 -15.55671 -15.19190 -14.72579 -14.25431 -13.98617 -13.50510 -13.10840 -12.73024 -12.49768 -12.33489 -11.99982 -11.81714 -11.73274 -11.46652 -11.34915 -11.15355 -10.95825 -10.84317 -10.51451 -10.44716 -10.20139 -9.87480 -9.43807 -9.22472 -9.05602 -7.86241 -7.13054 -6.21829 -4.63996 2.27440 2.55313 2.91368 2.93094 3.00452 3.69286 3.98088 4.03679 4.27905 5.09016 5.17304 5.38831 5.61200 5.63382 5.82260 5.90351 5.96708 6.02266 6.17522 6.22789 6.22901 6.29333 6.29932 6.42615 6.44941 6.59702 6.60524 6.63933 6.78551 6.86515 7.21954 7.43341 7.49987 7.78691 7.88021 8.05443 8.34112 8.50704 8.76166 9.09518 9.85729 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.006892 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.423576 B = 4061.757980 C = 4863.426824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.045 4.045 3 N -0.463 5.463 4 C 0.104 3.896 5 C 0.009 3.991 6 C -0.135 4.135 7 C -0.134 4.134 8 N -0.296 5.296 9 C -0.180 4.180 10 C 0.107 3.893 11 C -0.444 4.444 12 H 0.086 0.914 13 C 0.075 3.925 14 N -0.790 5.790 15 Si 0.919 3.081 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.082 4.082 20 C -0.121 4.121 21 C -0.010 4.010 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.132 0.868 33 H 0.287 0.713 34 H 0.137 0.863 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 3.725 1.628 4.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.183 4.183 3 N -0.180 5.180 4 C -0.148 4.148 5 C -0.012 4.012 6 C -0.193 4.193 7 C -0.192 4.192 8 N 0.040 4.960 9 C -0.302 4.302 10 C 0.103 3.897 11 C -0.473 4.473 12 H 0.104 0.896 13 C -0.144 4.144 14 N -0.415 5.415 15 Si 0.742 3.258 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.104 4.104 20 C -0.140 4.140 21 C -0.125 4.125 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.334 4.429 1.475 4.680 hybrid contribution 0.890 -1.659 0.025 1.883 sum 0.557 2.769 1.500 3.198 Atomic orbital electron populations 1.19733 0.88722 1.01160 1.00734 1.20463 0.95086 0.87242 1.15519 1.69388 0.99639 1.30339 1.18608 1.22487 0.94098 0.79953 1.18219 1.19175 0.92452 0.93470 0.96070 1.21745 1.01629 0.99035 0.96861 1.21736 1.01652 0.99036 0.96785 1.42064 1.06411 1.06396 1.41157 1.21264 0.89275 0.88774 1.30868 1.18289 0.92667 0.89592 0.89134 1.19286 0.97176 0.95028 1.35805 0.89611 1.25960 0.96450 0.99815 0.92172 1.69889 1.27008 1.22389 1.22193 0.86177 0.80721 0.78748 0.80141 1.18533 1.20026 1.18683 1.22614 0.91790 0.99762 0.96207 1.20135 0.99032 0.89417 1.05446 1.19089 0.84275 0.94570 1.14614 0.92837 0.92385 0.92381 0.90874 0.92885 0.91902 0.93049 0.91894 0.93106 0.92883 0.85062 0.90183 0.84539 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.79 10.41 36.01 0.37 -0.42 16 2 C -0.05 -1.01 7.20 -81.92 -0.59 -1.60 16 3 N -0.46 -10.54 11.19 -6.11 -0.07 -10.61 16 4 C 0.10 2.32 6.49 -154.10 -1.00 1.32 16 5 C 0.01 0.16 3.32 -91.77 -0.30 -0.15 16 6 C -0.13 -2.13 9.18 37.16 0.34 -1.79 16 7 C -0.13 -2.09 9.17 37.15 0.34 -1.74 16 8 N -0.30 -7.18 2.93 -56.87 -0.17 -7.35 16 9 C -0.18 -4.41 10.51 -15.26 -0.16 -4.57 16 10 C 0.11 2.71 5.70 -104.99 -0.60 2.11 16 11 C -0.44 -10.84 9.04 -37.97 -0.34 -11.19 16 12 H 0.09 2.00 7.90 -52.49 -0.41 1.58 16 13 C 0.08 1.72 5.19 -17.38 -0.09 1.63 16 14 N -0.79 -18.65 10.87 55.53 0.60 -18.04 16 15 Si 0.92 17.10 29.59 -169.99 -5.03 12.07 16 16 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 17 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 19 C -0.08 -1.97 8.87 -37.17 -0.33 -2.30 16 20 C -0.12 -2.73 10.03 -39.44 -0.40 -3.13 16 21 C -0.01 -0.23 6.72 -84.05 -0.56 -0.79 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.07 1.29 7.26 -51.93 -0.38 0.91 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 3.01 7.42 -52.49 -0.39 2.62 16 33 H 0.29 6.13 8.30 -40.82 -0.34 5.80 16 34 H 0.14 3.25 6.23 -52.49 -0.33 2.92 16 35 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 296.17 15.07 4.46 4.46 Total: -1.00 -27.51 296.17 -8.39 -35.89 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.87 Total: 6.19 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -3.32 Total: -22.61 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.37 Total: -36.00 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.51 -8.39 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.870 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds