Wall clock time and date at job start Mon Mar 30 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33499 * 126.14799 * 2 1 4 4 C 1.30744 * 109.90110 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.41917 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46758 * 300.02365 * 5 4 3 7 7 C 1.52991 * 109.47106 * 60.02464 * 5 4 3 8 8 N 1.36252 * 109.15956 * 0.26434 * 4 3 2 9 9 C 1.36153 * 132.30305 * 179.73336 * 8 4 3 10 10 C 1.39244 * 120.16430 * 180.02562 * 9 8 4 11 11 C 1.41206 * 120.37951 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00087 * 23.24387 * 11 10 9 13 13 C 1.39547 * 120.00618 * 203.25365 * 11 10 9 14 14 N 1.31089 * 119.99439 * 17.56284 * 13 11 10 15 15 Si 1.86795 * 120.00369 * 197.56861 * 13 11 10 16 16 H 1.48506 * 109.47175 * 59.99471 * 15 13 11 17 17 H 1.48498 * 109.47309 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47050 * 299.99578 * 15 13 11 19 19 C 1.46688 * 119.25018 * 359.97438 * 10 9 8 20 20 C 1.35434 * 118.98384 * 359.61660 * 19 10 9 21 21 C 1.37882 * 106.87104 * 359.58275 * 8 4 3 22 22 H 1.08999 * 109.47039 * 89.97055 * 1 2 3 23 23 H 1.09002 * 109.47191 * 209.97589 * 1 2 3 24 24 H 1.09006 * 109.47196 * 329.97362 * 1 2 3 25 25 H 1.08999 * 109.47065 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.46435 * 179.97438 * 6 5 4 27 27 H 1.08999 * 109.47192 * 60.00250 * 6 5 4 28 28 H 1.09000 * 109.46930 * 299.99817 * 6 5 4 29 29 H 1.08999 * 109.47218 * 299.99980 * 7 5 4 30 30 H 1.08997 * 109.47319 * 60.00364 * 7 5 4 31 31 H 1.09002 * 109.47540 * 180.02562 * 7 5 4 32 32 H 1.08001 * 119.91847 * 0.02562 * 9 8 4 33 33 H 0.97006 * 119.99283 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.50971 * 179.97438 * 19 10 9 35 35 H 1.08002 * 120.10177 * 179.89599 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2945 1.0780 0.0000 4 6 3.5497 0.7122 -0.0005 5 6 4.7318 1.6469 -0.0002 6 6 4.6838 2.5303 -1.2486 7 6 4.6852 2.5277 1.2499 8 7 3.6189 -0.6485 -0.0069 9 6 4.6712 -1.5125 -0.0146 10 6 4.4479 -2.8870 -0.0205 11 6 5.5359 -3.7871 -0.0280 12 1 6.5009 -3.4710 0.3397 13 6 5.3643 -5.0851 -0.5107 14 7 4.3292 -5.3737 -1.2615 15 14 6.6095 -6.4115 -0.0870 16 1 6.6690 -6.5818 1.3871 17 1 6.2015 -7.6929 -0.7168 18 1 7.9476 -6.0143 -0.5938 19 6 3.0697 -3.3893 -0.0176 20 6 2.0475 -2.5010 -0.0014 21 6 2.3215 -1.1153 -0.0007 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5143 25 1 5.6542 1.0662 -0.0013 26 1 5.5386 3.2066 -1.2480 27 1 3.7614 3.1110 -1.2475 28 1 4.7171 1.9027 -2.1392 29 1 3.7628 3.1084 1.2510 30 1 4.7194 1.8984 2.1392 31 1 5.5399 3.2041 1.2500 32 1 5.6815 -1.1309 -0.0163 33 1 4.2097 -6.2761 -1.5968 34 1 2.8732 -4.4512 -0.0224 35 1 1.0258 -2.8509 -0.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:20 Heat of formation + Delta-G solvation = 34.353227 kcal Electronic energy + Delta-G solvation = -17275.964131 eV Core-core repulsion = 14659.085408 eV Total energy + Delta-G solvation = -2616.878722 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.10324 -38.09828 -36.29593 -35.42181 -33.82275 -31.60984 -30.71502 -28.01648 -27.66811 -26.50236 -23.93814 -23.30916 -21.73092 -20.66572 -19.15482 -17.59888 -17.32687 -16.89992 -16.45840 -15.82261 -15.51983 -15.03922 -14.72798 -14.11702 -14.03995 -13.82966 -13.59765 -13.32265 -13.04098 -13.02088 -12.89461 -12.77528 -12.39002 -12.26432 -12.04913 -11.87218 -11.82319 -11.61414 -11.15450 -10.99908 -10.81741 -9.69365 -8.87038 -7.97671 -6.49659 0.46390 0.80270 1.38355 1.48011 1.51990 2.12884 2.27043 2.33903 2.52174 3.33698 3.58617 3.97448 4.05128 4.22102 4.26544 4.33802 4.43664 4.49051 4.74156 4.76345 4.81450 4.89215 4.94375 4.96414 4.99726 5.07725 5.10104 5.17364 5.33810 5.35981 5.48822 5.60181 5.71180 6.05502 6.10504 6.25250 6.52179 6.69351 6.96642 7.33924 8.14367 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.006892 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.423576 B = 4061.757980 C = 4863.426824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.045 4.045 3 N -0.479 5.479 4 C 0.102 3.898 5 C 0.001 3.999 6 C -0.126 4.126 7 C -0.125 4.125 8 N -0.312 5.312 9 C -0.205 4.205 10 C 0.085 3.915 11 C -0.472 4.472 12 H 0.087 0.913 13 C 0.040 3.960 14 N -0.814 5.814 15 Si 0.991 3.009 16 H -0.258 1.258 17 H -0.264 1.264 18 H -0.259 1.259 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.050 4.050 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.297 0.703 34 H 0.135 0.865 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 3.940 1.776 4.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.183 4.183 3 N -0.196 5.196 4 C -0.150 4.150 5 C -0.020 4.020 6 C -0.184 4.184 7 C -0.183 4.183 8 N 0.023 4.977 9 C -0.326 4.326 10 C 0.081 3.919 11 C -0.500 4.500 12 H 0.105 0.895 13 C -0.177 4.177 14 N -0.439 5.439 15 Si 0.811 3.189 16 H -0.182 1.182 17 H -0.188 1.188 18 H -0.183 1.183 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.165 4.165 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.152 0.848 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.221 4.646 1.618 4.925 hybrid contribution 0.781 -1.630 -0.048 1.808 sum 0.560 3.016 1.570 3.446 Atomic orbital electron populations 1.19883 0.85440 1.02748 1.02132 1.21317 0.97227 0.86536 1.13200 1.69477 0.99955 1.30498 1.19664 1.23492 0.95420 0.79996 1.16095 1.19468 0.90665 0.93482 0.98355 1.21683 1.03017 0.98773 0.94918 1.21670 1.03005 0.98769 0.94832 1.42271 1.06518 1.07064 1.41819 1.21309 0.89678 0.88962 1.32676 1.18650 0.93642 0.90196 0.89422 1.19584 0.97257 0.96306 1.36883 0.89477 1.26811 0.98343 1.01250 0.91292 1.69918 1.28293 1.23453 1.22237 0.85094 0.78053 0.75913 0.79850 1.18238 1.18812 1.18283 1.22617 0.91927 0.99873 0.98358 1.20462 1.00177 0.88967 1.03388 1.19598 0.84759 0.95576 1.16545 0.91396 0.90589 0.91024 0.91054 0.89282 0.92361 0.94619 0.92376 0.94351 0.89320 0.84800 0.89201 0.84782 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.45 10.41 71.24 0.74 -0.71 16 2 C -0.04 -1.96 7.20 42.27 0.30 -1.66 16 3 N -0.48 -21.58 11.19 -173.24 -1.94 -23.52 16 4 C 0.10 4.58 6.49 137.67 0.89 5.47 16 5 C 0.00 0.02 3.32 -11.54 -0.04 -0.02 16 6 C -0.13 -3.79 9.18 71.98 0.66 -3.13 16 7 C -0.12 -3.68 9.17 71.98 0.66 -3.02 16 8 N -0.31 -15.44 2.93 -333.84 -0.98 -16.42 16 9 C -0.21 -10.43 10.51 84.26 0.89 -9.55 16 10 C 0.09 4.45 5.70 -20.10 -0.11 4.33 16 11 C -0.47 -23.62 9.04 23.32 0.21 -23.41 16 12 H 0.09 4.17 7.90 -2.91 -0.02 4.14 16 13 C 0.04 1.85 5.19 85.12 0.44 2.29 16 14 N -0.81 -38.61 10.87 21.76 0.24 -38.37 16 15 Si 0.99 34.49 29.59 68.60 2.03 36.52 16 16 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 17 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 18 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 19 C -0.11 -5.24 8.87 23.83 0.21 -5.03 16 20 C -0.11 -5.04 10.03 22.36 0.22 -4.82 16 21 C -0.05 -2.41 6.72 38.90 0.26 -2.15 16 22 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.07 2.51 7.26 -2.39 -0.02 2.49 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.13 6.44 7.42 -2.91 -0.02 6.42 16 33 H 0.30 12.57 8.30 -92.70 -0.77 11.80 16 34 H 0.13 6.54 6.23 -2.91 -0.02 6.53 16 35 H 0.15 5.62 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -59.97 296.17 5.76 -54.21 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 1.07 Total: 28.97 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 5.34 Total: -41.39 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.68 Total: -78.31 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -59.97 5.76 -54.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.562 kcal (2) G-P(sol) polarization free energy of solvation -59.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds